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Author |
Paine, C.E.T.; Harms, K.E.; Ramos, J. |
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Title |
Supplemental irrigation increases seedling performance and diversity in a tropical forest |
Type |
Journal Article |
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Year |
2009 |
Publication |
Journal of Tropical Ecology |
Abbreviated Journal |
J. Trop. Ecol. |
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Volume |
25 |
Issue |
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Pages |
171-180 |
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Keywords |
diversity; Estacion Biologica Los Amigos; habitat filtering; palms; Peru; precipitation; seasonality; seedling recruitment |
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Abstract |
Diversity is positively correlated with water availability at global, continental and regional scales. With the objective of better understanding the mechanisms that drive these relationships. we investigated the degree to which variation in water availability affects the performance (recruitment, growth a rid survival) of juvenile trees. Precipitation was supplemented throughout two dry seasons in a seasonal moist forest in south-eastern Peru. Supplementing precipitation by 160 mm mo(-1), we increased soil moisture by 17%. To generate seedling communities or known species composition, we sowed 3840 seeds of 12 species. We monitored the fates of the 554 seedlings recruited from the sown seeds. as well as 1856 older non-sown seedlings (10 cm <= height < 50 cm), and 2353 saplings (> 1 m tall). Watering significantly enhanced young seedling growth and survival, increasing stern density and diversity. Watering diminished the recruitment of species associated with upland forests, but increased the survival of both upland- and lowland-associated species. Though supplemental watering increased the growth of older seedlings. their density and diversity were unaffected. Sapling performance was insensitive to watering. We infer that variation in dry-season water availability may affect seedling community structure by differentially affecting recruitment and increasing overall survival. These results suggest that differential seedling recruitment and survival may contribute to the observed relationships between water availability, habitat associations and patterns of tree species richness. |
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[Paine, C. E. Timothy; Harms, Kyle E.] Louisiana State Univ, Dept Biol Sci, Baton Rouge, LA 70803 USA, Email: timothy.paine@ecofog.gf |
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CAMBRIDGE UNIV PRESS |
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0266-4674 |
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ISI:000264212400006 |
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EcoFoG @ eric.marcon @ |
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118 |
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Kiaer, L.P.; Felber, F.; Flavell, A.; Guadagnuolo, R.; Guiatti, D.; Hauser, T.P.; Olivieri, A.M.; Scotti, I.; Syed, N.; Vischi, M.; van de Wiel, C.; Jorgensen, R.B. |
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Title |
Spontaneous gene flow and population structure in wild and cultivated chicory, Cichorium intybus L |
Type |
Journal Article |
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Year |
2009 |
Publication |
Genetic Resources and Crop Evolution |
Abbreviated Journal |
Genet. Resour. Crop Evol. |
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Volume |
56 |
Issue |
3 |
Pages |
405-419 |
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Keywords |
AFLP; GM co-existence; Gene dispersal; Introgression; Risk assessment; SSAP |
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Abstract |
Spontaneous gene flow between wild and cultivated chicory, Cichorium intybus L., may have implications for the genetic structure and evolution of populations and varieties. One aspect of this crop-wild gene flow is the dispersal of transgenes from genetically modified varieties, e.g. gene flow from GM chicory to natural chicory could have unwanted consequences. With the purpose to identify and quantify crop-wild gene flow in chicory, we analysed introgression in 19 wild chicory populations and 16 accessions of chicory varieties and landraces distributed across Northern, Central and Mediterranean Europe. The analysis used 281 AFLP markers and 75 SSAP markers giving a total of 356 polymorphic markers. Results from model based assignments with the program STRUCTURE indicated many incidents of recent gene flow. Gene flow was observed both between cultivars and wild populations, between landraces and wild populations, between different wild populations as well as between cultivars. Population structure visualized by distance-based clustering showed a North-South geographical structuring of the wild populations, and a general grouping of the cultivars corresponding to known origin. The results indicated, however, that the structuring between the two groups of wild and cultivated types was weak. As crop and wild recipients are genetically close and genes are transferred between the two types rather frequently, focus on mitigating crop-wild gene flow should be increased, before transgenic varieties are cultivated openly. |
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[Kiaer, L. P.; Jorgensen, R. B.] DTU, Riso Natl Lab, Biosyst Dept, DK-4000 Roskilde, Denmark, Email: rikke.bagger.jorgensen@risoe.dk |
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0925-9864 |
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ISI:000264835300011 |
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EcoFoG @ eric.marcon @ |
Serial |
204 |
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Malhi, Y.; Aragao, L.E.O.C.; Metcalfe, D.B.; Paiva, R.; Quesada, C.A.; Almeida, S.; Anderson, L.; Brando, P.; Chambers, J.Q.; da Costa, A.C.L.; Hutyra, L.R.; Oliveira, P.; Patino, S.; Pyle, E.H.; Robertson, A.L.; Teixeira, L.M. |
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Title |
Comprehensive assessment of carbon productivity, allocation and storage in three Amazonian forests |
Type |
Journal Article |
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Year |
2009 |
Publication |
Global Change Biology |
Abbreviated Journal |
Glob. Change Biol. |
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Volume |
15 |
Issue |
5 |
Pages |
1255-1274 |
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Keywords |
allocation; Amazonia; carbon; growth; litterfall; productivity; respiration; roots; soil; tropical forest |
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Abstract |
The allocation and cycling of carbon (C) within forests is an important component of the biospheric C cycle, but is particularly understudied within tropical forests. We synthesise reported and unpublished results from three lowland rainforest sites in Amazonia (in the regions of Manaus, Tapajos and Caxiuana), all major sites of the Large-Scale Biosphere-Atmosphere Programme (LBA). We attempt a comprehensive synthesis of the C stocks, nutrient status and, particularly, the allocation and internal C dynamics of all three sites. The calculated net primary productivities (NPP) are 10.1 +/- 1.4 Mg C ha(-1) yr(-1) (Manaus), 14.4 +/- 1.3 Mg C ha(-1) yr(-1) (Tapajos) and 10.0 +/- 1.2 Mg C ha(-1) yr(-1) (Caxiuana). All errors bars report standard errors. Soil and leaf nutrient analyses indicate that Tapajos has significantly more plant-available phosphorus and calcium. Autotrophic respiration at all three sites (14.9-21.4 Mg C ha yr(-1)) is more challenging to measure, with the largest component and greatest source of uncertainty being leaf dark respiration. Comparison of measured soil respiration with that predicted from C cycling measurements provides an independent constraint. It shows general good agreement at all three sites, with perhaps some evidence for measured soil respiration being less than expected. Twenty to thirty percent of fixed C is allocated belowground. Comparison of gross primary productivity (GPP), derived from ecosystem flux measurements with that derived from component studies (NPP plus autotrophic respiration) provides an additional crosscheck. The two approaches are in good agreement, giving increased confidence in both approaches to estimating GPP. The ecosystem carbon-use efficiency (CUEs), the ratio of NPP to GPP, is similar at Manaus (0.34 +/- 0.10) and Caxiuana (0.32 +/- 0.07), but may be higher at Tapajos (0.49 +/- 0.16), although the difference is not significant. Old growth or infertile tropical forests may have low CUE compared with recently disturbed and/or fertile forests. |
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[Malhi, Yadvinder; Aragao, Luiz Eduardo O. C.; Metcalfe, Daniel B.; Anderson, Liana] Sch Geog & Environm, Environm Change Inst, Oxford OX1 3QY, England, Email: yadvinder.malhi@ouce.ox.ac.uk |
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WILEY-BLACKWELL PUBLISHING, INC |
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ISSN |
1354-1013 |
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Notes |
ISI:000265033700015 |
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no |
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Call Number |
EcoFoG @ eric.marcon @ |
Serial |
117 |
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Author |
Paine, C.E.T.; Harms, K.E. |
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Title |
Quantifying the effects of seed arrival and environmental conditions on tropical seedling community structure |
Type |
Journal Article |
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Year |
2009 |
Publication |
Oecologia |
Abbreviated Journal |
Oecologia |
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Volume |
160 |
Issue |
1 |
Pages |
139-150 |
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Keywords |
Community assembly; Dispersal; Niche differentiation; Seed addition; Variance partitioning |
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Abstract |
Though it is recognized that both stochastic and deterministic processes structure all communities, empirical assessments of their relative importance are rare, particularly within any single community. In this paper, we quantify the dynamic effects of dispersal assembly and niche assembly on the seedling layer in a diverse neotropical rain forest. The two theories make divergent predictions regarding the roles of seed arrival and environmental heterogeneity in generating community structure. Put simply, dispersal assembly posits that the stochasticity inherent to seed arrival structures communities, whereas niche assembly suggests that heterogeneity in post-dispersal environmental conditions is more important. We experimentally sowed 15,132 seeds of eight tree species at varying levels of density and diversity. Every six months we censused the seedlings that germinated and assessed the abiotic and biotic conditions of each plot. We assessed the density, diversity, and species composition of three nested subsets of the seedling layer: seedlings germinated from sown seeds, all seedlings germinated between July 2003 and 2004, and all woody seedlings. We partitioned the variance in density and diversity of each subset of the seedling layer into components representing seed-addition treatments and environmental conditions at 6- to 12-month intervals. Seed additions initially explained more variance in the density and diversity than did environmental heterogeneity for seven of eight sown species, but explained little variance in the density or diversity of the entire seedling layer. Species composition was better explained by seed-addition treatments than by environmental heterogeneity for all three subsets and in all time periods. Nevertheless, the variance in community structure explained by seed-addition treatments declined over the two years following germination, presaging shifts in the relative importance of dispersal assembly and niche assembly. Our study quantifies how dispersal assembly and niche assembly may vary among the components of an ecological community and shift dynamically through time. |
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[Paine, C. E. Timothy; Harms, Kyle E.] Louisiana State Univ, Dept Biol Sci, Baton Rouge, LA 70803 USA, Email: timothy.paine@ecofog.gf |
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SPRINGER |
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0029-8549 |
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ISI:000265100500014 |
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no |
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EcoFoG @ eric.marcon @ |
Serial |
116 |
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Author |
Grangier, J.; Dejean, A.; Male, P.J.G.; Solano, P.J.; Orivel, J. |
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Title |
Mechanisms driving the specificity of a myrmecophyte-ant association |
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Journal Article |
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Year |
2009 |
Publication |
Biological Journal of the Linnean Society |
Abbreviated Journal |
Biol. J. Linnean Soc. |
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Volume |
97 |
Issue |
1 |
Pages |
90-97 |
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Keywords |
Allomerus decemarticulatus; exclusion filters; Hirtella physophora; horizontal transmission; host recognition; mutualism |
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Abstract |
In the understory of pristine Guianese forests, the myrmecophyte Hirtella physophora almost exclusively shelters colonies of the plant-ant Allomerus decemarticulatus in its leaf pouches. We experimentally tested three non-mutually exclusive hypotheses concerning phenomena that can determine the species specificity of this association throughout the foundation stage of the colonies: (1) interspecific competition results in the overwhelming presence of A. decemarticulatus queens or incipient colonies; (2) exclusion filters prevent other ant species from entering the leaf pouches; and (3) host-recognition influences the choice of founding queens, especially A. decemarticulatus. Neither interspecific competition, nor the purported exclusion filters that we examined play a major role in maintaining the specificity of this association. Unexpectedly, the plant trichomes lining the domatia appear to serve as construction material during claustral foundation rather than as a filter. Finally, A. decemarticulatus queens are able to identify their host plant from a distance through chemical and/or visual cues, which is rarely demonstrated in studies on obligatory ant-plant associations. We discuss the possibility that this specific host-recognition ability could participate in shaping a compartmentalized plant-ant community where direct competition between ant symbionts is limited. (C) 2009 The Linnean Society of London, Biological Journal of the Linnean Society, 2009, 97, 90-97. |
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[Grangier, Julien; Male, Pierre-Jean G.; Orivel, Jerome] Univ Toulouse 3, Lab Evolut & Divers Biol, CNRS, UMR 5174, F-31062 Toulouse 9, France, Email: grangier@cict.fr |
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WILEY-BLACKWELL PUBLISHING, INC |
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0024-4066 |
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ISI:000265406800008 |
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no |
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EcoFoG @ eric.marcon @ |
Serial |
114 |
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Patino, S.; Lloyd, J.; Paiva, R.; Baker, T.R.; Quesada, C.A.; Mercado, L.M.; Schmerler, J.; Schwarz, M.; Santos, A.J.B.; Aguilar, A.; Czimczik, C.I.; Gallo, J.; Horna, V.; Hoyos, E.J.; Jimenez, E.M.; Palomino, W.; Peacock, J.; Pena-Cruz, A.; Sarmiento, C.; Sota, A.; Turriago, J.D.; Villanueva, B.; Vitzthum, P.; Alvarez, E.; Arroyo, L.; Baraloto, C.; Bonal, D.; Chave, J.; Costa, A.C.L.; Herrera, R.; Higuchi, N.; Killeen, T.; Leal, E.; Luizao, F.; Meir, P.; Monteagudo, A.; Neil, D.; Nunez-Vargas, P.; Penuela, M.C.; Pitman, N.; Priante, N.; Prieto, A.; Panfil, S.N.; Rudas, A.; Salomao, R.; Silva, N.; Silveira, M.; deAlmeida, S.S.; Torres-Lezama, A.; Vasquez-Martinez, R.; Vieira, I.; Malhi, Y.; Phillips, O.L. |
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Title |
Branch xylem density variations across the Amazon Basin |
Type |
Journal Article |
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Year |
2009 |
Publication |
Biogeosciences |
Abbreviated Journal |
Biogeosciences |
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Volume |
6 |
Issue |
4 |
Pages |
545-568 |
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Abstract |
Xylem density is a physical property of wood that varies between individuals, species and environments. It reflects the physiological strategies of trees that lead to growth, survival and reproduction. Measurements of branch xylem density, rho(x), were made for 1653 trees representing 598 species, sampled from 87 sites across the Amazon basin. Measured values ranged from 218 kg m(-3) for a Cordia sagotii (Boraginaceae) from Mountagne de Tortue, French Guiana to 1130 kg m(-3) for an Aiouea sp. (Lauraceae) from Caxiuana, Central Para, Brazil. Analysis of variance showed significant differences in average rho(x) across regions and sampled plots as well as significant differences between families, genera and species. A partitioning of the total variance in the dataset showed that species identity (family, genera and species) accounted for 33% with environment (geographic location and plot) accounting for an additional 26%; the remaining “residual” variance accounted for 41% of the total variance. Variations in plot means, were, however, not only accountable by differences in species composition because xylem density of the most widely distributed species in our dataset varied systematically from plot to plot. Thus, as well as having a genetic component, branch xylem density is a plastic trait that, for any given species, varies according to where the tree is growing in a predictable manner. Within the analysed taxa, exceptions to this general rule seem to be pioneer species belonging for example to the Urticaceae whose branch xylem density is more constrained than most species sampled in this study. These patterns of variation of branch xylem density across Amazonia suggest a large functional diversity amongst Amazonian trees which is not well understood. |
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Address |
[Patino, S.; Aguilar, A.; Jimenez, E. M.; Vitzthum, P.; Penuela, M. C.] Univ Nacl Colombia, Inst Amazonico Invest Imani, Grp Ecol Ecosistemas Terrestres Trop, Leticia, Amazonas, Colombia, Email: sanpatiga@gmail.com |
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COPERNICUS PUBLICATIONS |
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1726-4170 |
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ISI:000265743200004 |
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EcoFoG @ eric.marcon @ |
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115 |
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Author |
Corbara, B.; Carpenter, J.M.; Cereghino, R.; Leponce, M.; Gibernau, M.; Dejean, A. |
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Title |
Diversity and nest site selection of social wasps along Guianese forest edges: assessing the influence of arboreal ants |
Type |
Journal Article |
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Year |
2009 |
Publication |
Comptes Rendus Biologies |
Abbreviated Journal |
C. R. Biol. |
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Volume |
332 |
Issue |
5 |
Pages |
470-479 |
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Keywords |
Polistinae; Diversity; Nest site selection; Ant-wasp-plant interactions; French Guiana |
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Abstract |
monitored), and estimate that we recorded up to 73% of the local social wasp fauna. This baseline study was complemented by a long-term survey of the same area and the examination of isolated trees (permitting us to record two additional species, resulting in a total of 63 wasp species). Our results form a continuum from species avoiding nesting on any plant (6.5% of the wasp species) to species nesting on plants but avoiding those sheltering ant nests (82%), to, finally, wasps nesting in association with arboreal ants known to divert army ant raids (11.5%). Consequently, this study documents that most wasp species select plants possibly repulsive to arboreal ants, while associations with arboreal ants, although confirmed here, have been overrepresented in the literature. To cite this article: B. Corbara et al., C. R. Biologies 332 (2009). (C) 2009 Academie des sciences. Published by Elsevier Masson SAS. All rights reserved. |
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Address |
[Dejean, Alain] CNRS Guyane, UPS 2561, F-97300 Cayenne, France, Email: bruno.corbara@univ-bpclermont.fr |
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ELSEVIER FRANCE-EDITIONS SCIENTIFIQUES MEDICALES ELSEVIER |
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1631-0691 |
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ISI:000266021400007 |
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no |
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EcoFoG @ eric.marcon @ |
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113 |
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Strasburg, J.L.; Scotti-Saintagne, C.; Scotti, I.; Lai, Z.; Rieseberg, L.H. |
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Title |
Genomic Patterns of Adaptive Divergence between Chromosomally Differentiated Sunflower Species |
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Journal Article |
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Year |
2009 |
Publication |
Molecular Biology and Evolution |
Abbreviated Journal |
Mol. Biol. Evol. |
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Volume |
26 |
Issue |
6 |
Pages |
1341-1355 |
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Keywords |
species boundaries; chromosomal rearrangements; positive selection; hybridization; sunflowers; Helianthus |
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Abstract |
Understanding the genetic mechanisms of speciation and basis of species differences is among the most important challenges in evolutionary biology. Two questions of particular interest are what roles divergent selection and chromosomal differentiation play in these processes. A number of recently proposed theories argue that chromosomal rearrangements can facilitate the development and maintenance of reproductive isolation and species differences by suppressing recombination within rearranged regions. Reduced recombination permits the accumulation of alleles contributing to isolation and adaptive differentiation and protects existing differences from the homogenizing effects of introgression between incipient species. Here, we examine patterns of genetic diversity and divergence in rearranged versus collinear regions in two widespread, extensively hybridizing sunflower species, Helianthus annuus and Helianthus petiolaris, using sequence data from 77 loci distributed throughout the genomes of the two species. We find weak evidence for increased genetic divergence near chromosomal break points but not within rearranged regions overall. We find no evidence for increased rates of adaptive divergence on rearranged chromosomes; in fact, collinear chromosomes show a far greater excess of fixed amino acid differences between the two species. A comparison with a third sunflower species indicates that much of the nonsynonymous divergence between H. annuus and H. petiolaris probably occurred during or soon after their formation. Our results suggest a limited role for chromosomal rearrangements in genetic divergence, but they do document substantial adaptive divergence and provide further evidence of how species integrity and genetic identity can be maintained at many loci in the face of extensive hybridization and gene flow. |
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Address |
[Strasburg, Jared L.; Scotti-Saintagne, Caroline; Rieseberg, Loren H.] Indiana Univ, Dept Biol, Bloomington, IN 47405 USA, Email: jstrasbu@indiana.edu |
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OXFORD UNIV PRESS |
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ISSN |
0737-4038 |
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Notes |
ISI:000266116500012 |
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no |
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EcoFoG @ eric.marcon @ |
Serial |
111 |
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Prevost-Boure, N.C.; Ngao, J.; Berveiller, D.; Bonal, D.; Damesin, C.; Dufrene, E.; Lata, J.C.; Le Dantec, V.; Longdoz, B.; Ponton, S.; Soudani, K.; Epron, D. |
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Title |
Root exclusion through trenching does not affect the isotopic composition of soil CO2 efflux |
Type |
Journal Article |
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Year |
2009 |
Publication |
Plant and Soil |
Abbreviated Journal |
Plant Soil |
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Volume |
319 |
Issue |
1-2 |
Pages |
1-13 |
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Keywords |
Stable carbon isotopes; Natural abundance; Soil respiration; Trenched plot; Rainforest; Temperate forest |
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Abstract |
Disentangling the autotrophic and heterotrophic components of soil CO2 efflux is critical to understanding the role of soil system in terrestrial carbon (C) cycling. In this study, we combined a stable C-isotope natural abundance approach with the trenched plot method to determine if root exclusion significantly affected the isotopic composition (delta C-13) of soil CO2 efflux (R-S). This study was performed in different forest ecosystems: a tropical rainforest and two temperate broadleaved forests, where trenched plots had previously been installed. At each site, R-S and its delta C-13 (delta C-13(Rs)) tended to be lower in trenched plots than in control plots. Contrary to R-S, delta C-13(Rs) differences were not significant. This observation is consistent with the small differences in delta C-13 measured on organic matter from root, litter and soil. The lack of an effect on delta C-13(Rs) by root exclusion could be from the small difference in delta C-13 between autotrophic and heterotrophic soil respirations, but further investigations are needed because of potential artefacts associated with the root exclusion technique. |
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[Prevost-Boure, Nicolas Chemidlin; Berveiller, Daniel; Damesin, Claire; Dufrene, Eric; Lata, Jean-Christophe; Soudani, Kamel] Univ Paris Sud, Lab Ecol Systemat & Evolut, AgroParisTech, CNRS,UMR 8079, F-75231 Paris, France, Email: nicolas.chemidlin-prevost-boure@u-psud.fr |
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0032-079X |
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ISI:000266143400001 |
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EcoFoG @ eric.marcon @ |
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203 |
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Author |
Brechet, L.; Ponton, S.; Roy, J.; Freycon, V.; Couteaux, M.M.; Bonal, D.; Epron, D. |
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Do tree species characteristics influence soil respiration in tropical forests? A test based on 16 tree species planted in monospecific plots |
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2009 |
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Plant and Soil |
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Plant Soil |
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319 |
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1-2 |
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235-246 |
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Fine root; Litter quality; Nutrient cycling; Plant soil interactions; Soil respiration; Tropical plantations |
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The high spatial variability of soil respiration in tropical rainforests is well evaluated, but influences of biotic factors are not clearly understood. This study underlines the influence of tree species characteristics on soil respiration across a 16-monospecific plot design in a tropical plantation of French Guiana. A large variability of soil CO2 fluxes was observed among plots (i.e. 2.8 to 6.8 μmol m(-2) s(-1)) with the ranking being constant across seasons. There were no significant relationships between soil respiration and soil moisture or soil temperature, neither spatially, nor seasonally. The variability of soil respiration was mainly explained by quantitative factors such as leaf litterfall and basal area. Surprisingly, no significant relationship was observed between soil respiration and root biomass. However, the influence of substrate quality was revealed by a strong relationship between soil respiration and litterfall P (and litterfall N, to a lesser extent). |
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[Ponton, Stephane] Natl Inst Agr Res INRA Ctr Rech Nancy, Forest Ecol & Ecophysiol Unit, UMR EEF, F-54280 Seichamps, France, Email: ponton@nancy.inra.fr |
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0032-079X |
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ISI:000266143400020 |
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EcoFoG @ eric.marcon @ |
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110 |
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