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| Author |
Siebicke, L.; Hunner, M.; Foken, T. |
| Title |
Aspects of CO 2 advection measurements |
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Journal Article |
| Year |
2012 |
Publication |
Theoretical and Applied Climatology |
Abbreviated Journal |
Theor. Appl. Climatol. |
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109 |
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1-2 |
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109-131 |
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Observations of vegetation-atmosphere exchange of carbon dioxide (CO 2) by the eddy covariance (EC) technique are limited by difficult conditions such as nighttime and heterogeneous terrain. Thus, advective flux components are included into the net ecosystem exchange (NEE) budget. However, advection measurements are experimentally challenging and do not always help to solve the night flux problem of the EC technique. This study investigates alternative methods for the observation of horizontal advection, in particular horizontal concentration gradients, as well as different approaches to coordinate rotation and vertical advection. Continuous high-frequency measurements of the horizontal CO 2 concentration field are employed and compared to the often used discontinuous sequential sampling. Significant differences were found in the case of 30-min mean concentration values between the conventional discontinuous sampling approach and the complete observation of the time series by continuous sampling. Estimates of vertical advection rely on accurate estimates of vertical wind velocity (W). Therefore, different approaches to the planar fit coordinate rotation have been investigated. Sector-wise rotation was able to eliminate directional dependencies of mean W. Furthermore, the effect of the data set length used for rotation (window length) was investigated and was found to have significant impact on estimates of vertical advection, with larger window lengths yielding about 50% larger vertical advection. A sequential planar fit with controlled window length is proposed to give reproducible results. The different approaches to the measurement and calculation of horizontal and vertical advection presented are applied to data obtained during the exchange processes in mountainous region experiment at the FLUXNET site Waldstein-Weidenbrunnen (DE-Bay). Estimates of NEE including advection are compared to NEE from turbulent and storage flux alone without advection. NEE including vertical advection with sector-wise planar fit rotation and controlled window length and including horizontal advection from continuous gradient measurements, which were comprehensively bias corrected by a new approach, did compare well with the expected night flux error, with meteorological drivers of the fluxes and with soil chamber measurements. Unrealistically large and noisy values of horizontal advection from the conventional discontinuous sampling approach, which lead to unrealistic values of NEE, could be eliminated by the alternative approaches presented. We therefore suggest the further testing of those approaches at other sites in order to improve the accuracy of advection measurements and, subsequently, estimates of NEE. © 2011 Springer-Verlag. |
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Wind Cert Services, TÜV SÜD Industrie Service GmbH, Ludwig-Eckert-Str. 10, 93049 Regensburg, Germany |
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Export Date: 27 June 2012; Source: Scopus; doi: 10.1007/s00704-011-0552-3; Language of Original Document: English; Correspondence Address: Siebicke, L.; Department of Micrometeorology, University of Bayreuth, Universitätsstr. 30, 95440 Bayreuth, Germany; email: lukas.siebicke@uni-bayreuth.de |
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Fortunel, C.; Paine, C.E.T.; Fine, P.V.A.; Mesones, I.; Goret, J.; Burban, B.; Cazal, J.; Baraloto, C.; Comita, L. |
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There's no place like home: seedling mortality contributes to the habitat specialisation of tree species across Amazonia |
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Journal Article |
| Year |
2016 |
Publication |
Ecology Letters |
Abbreviated Journal |
Ecology Letters |
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19 |
Issue |
10 |
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1256-1266 |
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Amazon basin; forests habitats; habitat association; herbivory; light availability; plant lineages; rainfall temporal variation; seedling performance; soil fertility; tropical trees |
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Understanding the mechanisms generating species distributions remains a challenge, especially in hyperdiverse tropical forests. We evaluated the role of rainfall variation, soil gradients and herbivory on seedling mortality, and how variation in seedling performance along these gradients contributes to habitat specialisation. In a 4-year experiment, replicated at the two extremes of the Amazon basin, we reciprocally transplanted 4638 tree seedlings of 41 habitat-specialist species from seven phylogenetic lineages among the three most important forest habitats of lowland Amazonia. Rainfall variation, flooding and soil gradients strongly influenced seedling mortality, whereas herbivory had negligible impact. Seedling mortality varied strongly among habitats, consistent with predictions for habitat specialists in most lineages. This suggests that seedling performance is a primary determinant of the habitat associations of adult trees across Amazonia. It further suggests that tree diversity, currently mostly harboured in terra firme forests, may be strongly impacted by the predicted climate changes in Amazonia. © 2016 John Wiley & Sons Ltd/CNRS |
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Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA, United States |
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Export Date: 27 October 2016 |
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698 |
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Nicolini, E.; Beauchene, J.; De La Vallee, B.L.; Ruelle, J.; Mangenet, T.; Heuret, P. |
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Dating branch growth units in a tropical tree using morphological and anatomical markers: The case of Parkia velutina Benoist (Mimosoïdeae) |
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Journal Article |
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2012 |
Publication |
Annals of Forest Science |
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Ann. Forest Sci. |
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69 |
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5 |
Pages |
543-555 |
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Crown development; Deciduousness; Dendrochronology; French Guiana; Growth ring; Phenology; Tree architecture; Wood anatomy |
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• Context In tropical areas, studies based on the retrospective analysis of tree development have focused principally on growth ring research. The interpretation of primary growth markers is overlooked although it opens perspectives to provide long time-series on tree-crown development. • Aims This study focused on Parkia velutina, an emergent tree of neotropical rain forests. Our objectives were (1) to characterize the phenological cycle of this species, and (2) to identify temporally interpretable morphological and anatomical markers. • Methods We collected dominant branches in 14 adult trees and identified growth markers that limit longitudinal and radial increments. We coupled this approach with a 2-year phenological survey of 20 trees. • Results Leaf shedding, growth unit elongation and growth ring formation define the phenological cycle. At tree scale, this cycle is synchronous and affects all axes. At population scale, trees can be desynchronized. This cycle is annual despite some slight variability. Successive growth units and growth rings are easily identifiable. • Conclusion Dating a branch by counting the number of growth units or growth rings is possible in many years with a reasonable error. Nevertheless, estimating their precise month of formation in order to study climatic influences remains difficult. © INRA/Springer-Verlag France 2012. |
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INRA, UMR AMAP, TA A-51/PS2, Montpellier 34398, France |
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Export Date: 27 September 2012; Source: Scopus; Coden: Afosf; doi: 10.1007/s13595-011-0172-1; Language of Original Document: English; Correspondence Address: Nicolini, E.; Unité Mixte de Recherche CIRAD-CNRS-INRA-IRD-Université Montpellier 2, BotAnique et BioinforMatique de l'Architecture des Plantes (AMAP), BP 701, Kourou 97387, French Guiana; email: eric-andre.nicolini@cirad.fr |
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436 |
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Niamké, F.B.; Amusant, N.; Stien, D.; Chaix, G.; Lozano, Y.; Kadio, A.A.; Lemenager, N.; Goh, D.; Adima, A.A.; Kati-Coulibaly, S.; Jay-Allemand, C. |
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4',5'-Dihydroxy-epiisocatalponol, a new naphthoquinone from Tectona grandis L. f. heartwood, and fungicidal activity |
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Journal Article |
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2012 |
Publication |
International Biodeterioration and Biodegradation |
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Int. Biodeterior. Biodegrad. |
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74 |
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93-98 |
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4',5'-Dihydroxy-epiisocatalponol; Decay resistance; Fungicidal; Heartwood; Naphthoquinone; Tectona grandis |
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A new naphthoquinone derivative was isolated from the heartwood of the teak stem. The chemical structure of this new compound, 4',5'-dihydroxy-epiisocatalponol, was determined using 1-D and 2-D nuclear magnetic resonance experiments, vibrational circular dichroism, HRMS, and optical rotation. We showed that this new naphthoquinone derivative plays a key role in the variability of decay resistance in teak wood. A high negative correlation was found between its concentration and the mass losses of the wood samples after exposure to the brown rot Antrodia sp., the fungus that is the most virulent against teak (R = -0.9; ρ < 0.0001). In-vitro bioassays allowed us to demonstrate that 4',5'-dihydroxy-epiisocatalponol acted as a fungicide against Trametes versicolor (white rot) at 58 mg ml -1 (0.22 mM). Overall, our results demonstrated that the concentration of 4',5'-dihydroxy-epiisocatalponol could be used as a new tool to evaluate teak wood durability. © 2012 Elsevier Ltd. |
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Laboratoire de Biochimie et de Physiologie Végétales, UMR 47 DIADE – Equipe Rhizogenèse, Université Montpellier II, Place Eugène Bataillon, 34095 Montpellier Cedex 05, France |
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Export Date: 27 September 2012; Source: Scopus; Coden: Ibbie; doi: 10.1016/j.ibiod.2012.03.010; Language of Original Document: English; Correspondence Address: Amusant, N.; CIRAD, Department Environments and societies, UMR Ecology forests of French Guiana, BP 732, 97310 Kourou cedex, French Guiana; email: nadine.amusant@cirad.fr |
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Audigeos, D.; Brousseau, L.; Traissac, S.; Scotti-Saintagne, C.; Scotti, I. |
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Molecular divergence in tropical tree populations occupying environmental mosaics |
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Journal Article |
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2013 |
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Journal of Evolutionary Biology |
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26 |
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3 |
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529-544 |
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Candidate genes; Drought; Eperua falcata; Flooding; Neotropics; Outlier loci; Tree genetics |
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Unveiling the genetic basis of local adaptation to environmental variation is a major goal in molecular ecology. In rugged landscapes characterized by environmental mosaics, living populations and communities can experience steep ecological gradients over very short geographical distances. In lowland tropical forests, interspecific divergence in edaphic specialization (for seasonally flooded bottomlands and seasonally dry terra firme soils) has been proven by ecological studies on adaptive traits. Some species are nevertheless capable of covering the entire span of the gradient; intraspecific variation for adaptation to contrasting conditions may explain the distribution of such ecological generalists. We investigated whether local divergence happens at small spatial scales in two stands of Eperua falcata (Fabaceae), a widespread tree species of the Guiana Shield. We investigated Single Nucleotide Polymorphisms (SNP) and sequence divergence as well as spatial genetic structure (SGS) at four genes putatively involved in stress response and three genes with unknown function. Significant genetic differentiation was observed among sub-populations within stands, and eight SNP loci showed patterns compatible with disruptive selection. SGS analysis showed genetic turnover along the gradients at three loci, and at least one haplotype was found to be in repulsion with one habitat. Taken together, these results suggest genetic differentiation at small spatial scale in spite of gene flow. We hypothesize that heterogeneous environments may cause molecular divergence, possibly associated to local adaptation in E. falcata. © 2012 European Society For Evolutionary Biology. |
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AgroParisTech-ENGREF, UMR 0745, EcoFoG ('Ecologie des forêts de Guyane'), Campus Agronomique, Kourou, French Guiana, France |
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Export Date: 28 February 2013; Source: Scopus |
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472 |
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Dejean, A.; Petitclerc, F.; Azémar, F.; Pélozuelo, L.; Talaga, S.; Leponce, M.; Compin, A. |
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Aquatic life in Neotropical rainforest canopies: Techniques using artificial phytotelmata to study the invertebrate communities inhabiting therein |
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Journal Article |
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2018 |
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Comptes Rendus – Biologies |
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Comptes Rendus – Biologies |
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341 |
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1 |
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20-27 |
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Artificial phytotelmata; Epiphytes; French Guiana; Invertebrate diversity; Neotropical rainforests |
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In Neotropical rainforest canopies, phytotelmata (“plant-held waters”) shelter diverse aquatic macroinvertebrate communities, including vectors of animal diseases. Studying these communities is difficult because phytotelmata are widely dispersed, hard to find from the ground and often inaccessible. We propose here a method for placing in tree crowns “artificial phytotelmata” whose size and shape can be tailored to different research targets. The efficacy of this method was shown while comparing the patterns of community diversity of three forest formations. We noted a difference between a riparian forest and a rainforest, whereas trees alongside a dirt road cutting through that rainforest corresponded to a subset of the latter. Because rarefied species richness was significantly lower when the phytotelmata were left for three weeks rather than for six or nine weeks, we recommend leaving the phytotelmata for twelve weeks to permit predators and phoretic species to fully establish themselves. |
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Export Date: 28 February 2018 |
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EcoFoG @ webmaster @ Dejean_etal2018 |
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795 |
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Fontaine, S.; Stahl, C.; Klumpp, K.; Picon-Cochard, C.; Grise, M.M.; Dezécache, C.; Ponchant, L.; Freycon, V.; Blanc, L.; Bonal, D.; Burban, B.; Soussana, J.-F.; Blanfort, V.; Alvarez, G. |
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Response to Editor to the comment by Schipper and Smith to our paper entitled 'Continuous soil carbon storage of old permanent pastures in Amazonia' |
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2018 |
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Global Change Biology |
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Global Change Biology |
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24 |
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3 |
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e732-e733 |
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chronosequence study; continuous C accumulation; deep soil C; eddy covariance; grassland |
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Export Date: 28 February 2018 |
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EcoFoG @ webmaster @ Fontaine_etal2018 |
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796 |
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Chang, S.-S.; Quignard, F.; Alméras, T.; Clair, B. |
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Mesoporosity changes from cambium to mature tension wood: A new step toward the understanding of maturation stress generation in trees |
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Journal Article |
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2015 |
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New Phytologist |
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New Phytologist |
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205 |
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3 |
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1277-1287 |
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Cell wall maturation; Maturation stress; Mesoporosity; Poplar (Populus deltoides × P. nigra); Tension wood |
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In order to progress in the understanding of mechanical stress generation, the mesoporosity of the cell wall and its changes during maturation of poplar (Populus deltoides × P. nigra) tension wood (TW) and opposite wood (OW) were measured by nitrogen adsorption-desorption. Variations in the thickness of the gelatinous layer (G-layer) were also measured to clarify whether the mesoporosity change simultaneously with the deposition of the G-layer in TW. Results show that mesoporous structures of TW and OW were very similar in early development stages before the deposition of G-layers. With the formation of the S2 layer in OW and the G-layer in TW, the mesopore volume decreased steeply before lignification. However, in TW only, the decrease in mesopore volume occurred together with the pore shape change and a progressive increase in pore size. The different patterns observed in TW revealed that pores from G-layers appear with a different shape compared to those of the compound middle lamella, and their size increases during the maturation process until stabilising in mature wood. This observation strongly supports the hypothesis of the swelling of the G-layer matrix during maturation as the origin of maturation stress in poplar tension wood. |
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CNRS, UMR Ecologie des Forêts de Guyane (EcoFoG), Campus Agronomique, BP 701Kourou, France |
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Export Date: 28 January 2015 |
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EcoFoG @ webmaster @ |
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581 |
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Leroy, C.; Carrias, J.-F.; Céréghino, R.; Corbara, B. |
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The contribution of microorganisms and metazoans to mineral nutrition in bromeliads |
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Journal Article |
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2016 |
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Journal of Plant Ecology |
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Journal of Plant Ecology |
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9 |
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3 |
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241-255 |
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digestive mutualism; insect-assisted nutrients; leaf δ15N; multiple N sources; myrmecotrophy |
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Aims One critical challenge for plants is to maintain an adequate nutrient supply under fluctuating environmental conditions. This is particularly true for epiphytic species that have limited or no access to the pedosphere and often live in harsh climates. Bromeliads have evolved key innovations such as epiphytism, water-absorbing leaf trichomes, tank habit and Crassulacean acid metabolism (CAM) photosynthesis that enable them to survive under various environmental conditions. Bromeliads encompass diverse ecological types that live on different substrates (they can be terrestrial, epilithic or epiphytic) and vary in their ability to retain water (they can be tank-forming or tankless) and photosynthetic pathway (i.e. C3 or CAM). In this review, we outline the nutritional modes and specializations that enable bromeliads to thrive in a wide range of nutrient-poor (mostly nitrogen-depleted) environments. Important Findings Bromeliads have evolved a great diversity of morphologies and functional adaptations leading to the existence of numerous nutritional modes. Focusing on species that have absorptive foliar trichomes, we review evidence that bromeliads have evolved multi-faceted nutritional strategies to respond to fluctuations in the supply of natural nitrogen (N). These plants have developed mutualistic associations with many different and functionally diverse terrestrial and aquatic microorganisms and metazoans that contribute substantially to their mineral nutrition and, thus, their fitness and survival. Bacterial and fungal microbiota-assisted N provisioning, protocarnivory, digestive mutualisms and myrmecotrophic pathways are the main strategies used by bromeliads to acquire nitrogen. The combination of different nutritional pathways in bromeliads represents an important adaptation enabling them to exploit nutrient-poor habitats. Nonetheless, as has been shown for several other vascular plants, multiple partners are involved in nutrient acquisition indicating that there have been convergent adaptations to nutrient scarcity. Finally, we point out some gaps in the current knowledge of bromeliad nutrition that offer fascinating research opportunities. © The Author 2015. Published by Oxford University Press on behalf of the Institute of Botany, Chinese Academy of Sciences and the Botanical Society of China. |
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CNRS, EcoLab, 118 Route de Narbonne, Toulouse, France |
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Vanbellingen, Q.P.; Fu, T.; Bich, C.; Amusant, N.; Stien, D.; Della-Negra, S.; Touboul, D.; Brunelle, A. |
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Mapping Dicorynia guianensis Amsh. wood constituents by submicron resolution cluster-TOF-SIMS imaging |
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Journal Article |
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2016 |
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Journal of Mass Spectrometry |
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Journal of Mass Spectrometry |
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51 |
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6 |
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412-423 |
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Dicorynia guianensis; heartwood formation; mass spectrometry imaging; Tof-Sims; tropical wood; tryptamine |
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The preparation of tropical wood surface sections for time-of-flight secondary ion mass spectrometry imaging is described, and the use of delayed extraction of secondary ions and its interest for the analysis of vegetal surface are shown. The method has been applied to the study by time-of-flight secondary ion mass spectrometry imaging with a resolution of less than one micron of a tropical wood species, Dicorynia guianensis, which is one of the most exploited wood in French Guiana for its durable heartwood. The heartwood of this species exhibits an economical importance, but its production is not controlled in forestry. Results show an increase of tryptamine from the transition zone and a concomitant decrease of inorganic ions and starch fragment ions. These experiments lead to a better understanding of the heartwood formation and the origin of the natural durability of D. guianensis. Copyright © 2016 John Wiley & Sons, Ltd. Copyright © 2016 John Wiley & Sons, Ltd. |
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Department of Chemistry and Biochemistry, Florida International University, Miami, FL, United States |
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