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Guitet, S., Herault, B., Molto, Q., Brunaux, O., & Couteron, P. (2015). Spatial structure of above-ground biomass limits accuracy of carbon mapping in rainforest but large scale forest inventories can help to overcome. PLoS ONE, 10(9), e0138456.
Abstract: Precise mapping of above-ground biomass (AGB) is a major challenge for the success of REDD+ processes in tropical rainforest. The usual mapping methods are based on two hypotheses: a large and long-ranged spatial autocorrelation and a strong environment influence at the regional scale. However, there are no studies of the spatial structure of AGB at the landscapes scale to support these assumptions.We studied spatial variation in AGB at various scales using two large forest inventories conducted in French Guiana. The dataset comprised 2507 plots (0.4 to 0.5 ha) of undisturbed rainforest distributed over the whole region. After checking the uncertainties of estimates obtained from these data, we used half of the dataset to develop explicit predictive models including spatial and environmental effects and tested the accuracy of the resulting maps according to their resolution using the rest of the data. Forest inventories provided accurate AGB estimates at the plot scale, for a mean of 325 Mg.ha-1. They revealed high local variability combined with a weak autocorrelation up to distances of no more than10 km. Environmental variables accounted for a minor part of spatial variation. Accuracy of the best model including spatial effects was 90 Mg.ha-1 at plot scale but coarse graining up to 2-km resolution allowed mapping AGB with accuracy lower than 50 Mg.ha-1. Whatever the resolution, no agreement was found with available pan-tropical reference maps at all resolutions.We concluded that the combined weak autocorrelation and weak environmental effect limit AGB maps accuracy in rainforest, and that a trade-off has to be found between spatial resolution and effective accuracy until adequate “wall-to-wall” remote sensing signals provide reliable AGB predictions. Waiting for this, using large forest inventories with low sampling rate (<0.5%) may be an efficient way to increase the global coverage of AGB maps with acceptable accuracy at kilometric resolution. Copyright: © 2015 Guitet et al.
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Talaga, S., Murienne, J., Dejean, A., & Leroy, C. (2015). Online database for mosquito (Diptera, Culicidae) occurrence records in French guiana. ZooKeys, 2015(532), 107–115.
Abstract: A database providing information on mosquito specimens (Arthropoda: Diptera: Culicidae) collected in French Guiana is presented. Field collections were initiated in 2013 under the auspices of the CEnter for the study of Biodiversity in Amazonia (CEBA: http://www.labexceba.fr/en/). This study is part of an ongoing process aiming to understand the distribution of mosquitoes, including vector species, across French Guiana. Occurrences are recorded after each collecting trip in a database managed by the laboratory Evolution et Diversité Biologique (EDB), Toulouse, France. The dataset is updated monthly and is available online. Voucher specimens and their associated DNA are stored at the laboratory Ecologie des Forêts de Guyane (Ecofog), Kourou, French Guiana. The latest version of the dataset is accessible through EDB’s Integrated Publication Toolkit at http://130.120.204.55:8080/ipt/resource.do?r=mosquitoesof french_guiana or through the Global Biodiversity Information Facility data portal at http://www.gbif.org/ dataset/5a8aa2ad-261c-4f61-a98e-26dd752fe1c5 It can also be viewed through the Guyanensis platform at http://guyanensis.ups-tlse.fr © Stanislas Talaga et al.
Keywords: Diversity; French guiana; Mosquitoes; Neotropics; Occurrence
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Ploton, P., Barbier, N., Couteron, P., Antin, C. M., Ayyappan, N., Balachandran, N., et al. (2017). Toward a general tropical forest biomass prediction model from very high resolution optical satellite images. Remote Sensing of Environment, 200, 140–153.
Abstract: Very high spatial resolution (VHSR) optical satellite imagery has shown good potential to provide non-saturating proxies of tropical forest aboveground biomass (AGB) from the analysis of canopy texture, for instance through the Fourier Transform Textural Ordination method. Empirical case studies however showed that the relationship between Fourier texture features and forest AGB varies across forest types and regions of the world, limiting model transferability. A better understanding of the biophysical mechanisms on which canopy texture – forest AGB relation relies is a prerequisite to move toward broad scale applications. Here we simulated VHSR optical canopy scenes in identical sun-sensor geometry for 279 1-ha tropical forest inventory plots distributed across the tropics. Our aim was to assess the respective merits and complementarity of two types of texture analysis techniques (i.e. Fourier and lacunarity) on a set of forests with contrasted structure and geographical origin, and develop a general texture-based approach for tropical forest AGB mapping. Across forests, Fourier texture captured a gradient of stands mean crown size reflecting well the progressive changes in stand structure throughout forest aggradation phase (e.g. Pearson's r = − 0.42 with basal area) while lacunarity texture captured a gradient of canopy openness (, i.e. Pearson's r = − 0.57 with stand gap fraction). Both types of texture indices were highly complementary for predicting forest AGB at the global level (so-called FL-model). The residual error of the FL-model was structured across sites and could be partially captured with a bioclimatic proxy, further improving the performance of the global model (so-called FLE-model) and reducing site-level biases. The FLE model was tested on a set of real Pleiades images covering a mosaic of high-biomass forests in the Congo basin (mean AGB over 49 field plots: 359 ± 98 Mg ha− 1), leading to a significant relationship (R2 = 0.47 on validation data) with reasonable error levels (< 25% rRMSE). The increasing availability of VHSR optical sensors (such as from constellations of small satellite platforms) raises the possibility of routine repeated imaging of the world's tropical forests and suggests that texture-based analyses could become an essential tool in international efforts to monitor carbon emissions from deforestation and forest degradations (REDD +). © 2017 Elsevier Inc.
Keywords: Canopy structure; Forest carbon; Fourier transform; Lacunarity; Passive optical imagery; Redd; Texture; Tropical forests
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Alméras, T., Gronvold, A., van der Lee, A., Clair, B., & Montero, C. (2017). Contribution of cellulose to the moisture-dependent elastic behaviour of wood. Composites Science and Technology, 138, 151–160.
Abstract: Wood has a hierarchical structure involving several levels of organisation. The stiffness of wood relies on its capacity to transfer mechanical stress to its stiffest element at the lowest scale, namely crystalline cellulose. This study aims at quantifying to what extend crystalline cellulose contributes to wood stiffness depending on its moisture content. The crystal strains of cellulose were measured using X-ray diffraction on wet and dry specimens of spruce, based on a previously published methodology. The comparison between crystal strain and macroscopic strain shows that, during elastic loading, cellulose strain is lower than macroscopic strain. The means ratio of crystal/macroscopic strain amounts 0.85 for dry specimens and 0.64 for wet specimens. This strain ratio cannot be explained just by the projection effect due to the difference in orientation between cellulose microfibrils and cell wall, but results from deformation mechanisms in series with cellulose. Analysis shows that this series contribution represents a non-negligible contribution to wood compliance and is strongly moisture-dependent. This contribution amounts 9% for dry specimens and 33% for wet specimens, corresponding to a 4-fold increase in compliance for the series contribution. The origin of these strains is ascribed to mechanisms involving bending or shear strain at different scales, due to the fact that reinforcing element are neither perfectly straight nor infinitely long. © 2016
Keywords: Cellulose; Crystal strain; Micromechanics; Wood; X-ray diffraction
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Scotti-Saintagne, C., Dick, C. W., Caron, H., Vendramin, G. G., Troispoux, V., Sire, P., et al. (2013). Amazon diversification and cross-Andean dispersal of the widespread Neotropical tree species Jacaranda copaia (Bignoniaceae). Journal of Biogeography, 40(4), 707–719.
Abstract: Aim: The phylogeographical history of Neotropical species can be difficult to reconstruct because of superimposed Neogene and Quaternary histories, and because of taxonomic uncertainty. We analysed range-wide genetic diversity in a widespread pioneer tree species, Jacaranda copaia (Aubl.) D. Don, to characterize phylogeographical structure, date the evolutionary relationships among lineages, and evaluate the role of dispersal and vicariance in establishing the present geographical range. Location: Guiana Shield; central, southern and western Amazon Basin; Chocó region; Central America. Methods: We analysed nine nuclear simple sequence repeat loci (nuSSR), eight chloroplast SSRs (cpSSR), and two cpDNA intergenic sequences in 341 adult trees. Genetic differentiation at nuSSRs was inferred using Bayesian clustering. Dating of chloroplast lineage divergence was obtained using a range of published mutation rates and Bayesian coalescence analyses. Population divergence dating was performed using an isolation-with-migration model for eight loci (one cp sequence and seven nuSSRs). Results: Nuclear SSR variation identified three geographically overlapping clusters (nu-1, nu-2, nu-3). Twelve cpDNA haplotypes were clustered into two haplogroups (cp-1, cp-2) with the central Amazon harbouring the highest diversity. Molecular dating analysis suggests that cpDNA haplotype diversification started around the end of the Pliocene (2.61 Ma on average), whereas population divergence was more recent and occurred during the mid-Quaternary (point estimates between 357 and 436 ka). Main conclusions: The genetic variation of J. copaia in the Neotropics was shaped mainly by Pleistocene events. Chloroplast diversity did not display the expected cis/trans Andean disjunction, indicating recent dispersal. Nuclear variation revealed that separate regions share a recent history, with a centre of diversity in the central Amazon Basin. The geographical pattern of diversity is congruent with the distribution of the two subspecies, J. copaia copaia and J. copaia spectabilis, and evidence of nuSSR admixture between the two taxa supports their classification as subspecies. © 2012 Blackwell Publishing Ltd.
Keywords: Amazonia; Bignoniaceae; Centre of diversity; Dispersal; Historical biogeography; Neotropics; Phylogeography; Pleistocene; Tropical forest; Vicariance
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Scotti-Saintagne, C., Dick, C. W., Caron, H., Vendramin, G. G., Guichoux, E., Buonamici, A., et al. (2013). Phylogeography of a species complex of lowland Neotropical rain forest trees (Carapa, Meliaceae). Journal of Biogeography, 40(4), 676–692.
Abstract: Aim Many tropical tree species have poorly delimited taxonomic boundaries and contain undescribed or cryptic species. We examined the genetic structure of a species complex in the tree genus Carapa in the Neotropics in order to evaluate age, geographic patterns of diversity and evolutionary relationships, and to quantify levels of introgression among currently recognized species. Location Lowland moist forests in the Guiana Shield, the Central and Western Amazon Basin, Chocó and Central America. Methods Genetic structure was analysed using seven nuclear simple sequence repeats (nuSSR), five chloroplast SSRs (cpSSR), and two chloroplast DNA (cpDNA) intergenic sequences (trnH-psbA and trnC-ycf6). Bayesian clustering analysis of the SSR data was used to infer population genetic structure and to assign 324 samples to their most likely genetic cluster. Bayesian coalescence analyses were performed on the two cpDNA markers to estimate evolutionary relationships and divergence times. Results Two genetic clusters (nuguianensis and nusurinamensis) were detected, which correspond to the Neotropical species C. guianensis (sensu latu) and C. surinamensis. Fourteen cpDNA haplotypes clustered into six haplogroups distributed between the two nuclear genetic clusters. Divergence between the haplogroups was initiated in the Miocene, with some haplotype structure evolving as recently as the Pleistocene. The absence of complete lineage sorting between the nuclear and chloroplast genomes and the presence of hybrid individuals suggest that interspecific reproductive barriers are incomplete. NuSSR diversity was highest in C. guianensis and, within C. guianensis, cpDNA diversity was highest in the Central and Western Amazon Basin. Regional genetic differentiation was strong but did not conform to an isolation-by-distance process or exhibit a phylogeographical signal. Main conclusions The biogeographical history of Neotropical Carapa appears to have been influenced by events that took place during the Neogene. Our results point to an Amazonian centre of origin and diversification of Neotropical Carapa, with subsequent migration to the Pacific coast of South America and Central America. Gene flow apparently occurs among species, and introgression events are supported by inconsistencies between chloroplast and nuclear lineage sorting. The absence of phylogeographical structure may be a result of the ineffectiveness of geographical barriers among populations and of reproductive isolation mechanisms among incipient and cryptic species in this species complex. © 2012 Blackwell Publishing Ltd.
Keywords: Amazonia; Carapa; Historical biogeography; Mahogany family; Molecular markers; Neogene diversification; Phylogeography; Quaternary diversification; Species complexes
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Dejean, A., Orivel, J., Rossi, V., Roux, O., Lauth, J., Malé, P. - J. G., et al. (2013). Predation Success By A Plant-Ant Indirectly Favours The Growth And Fitness Of Its Host Myrmecophyte. PLoS ONE, 8(3), e59405.
Abstract: Mutualisms, or interactions between species that lead to net fitness benefits for each species involved, are stable and ubiquitous in nature mostly due to “byproduct benefits” stemming from the intrinsic traits of one partner that generate an indirect and positive outcome for the other. Here we verify if myrmecotrophy (where plants obtain nutrients from the refuse of their associated ants) can explain the stability of the tripartite association between the myrmecophyte Hirtella physophora, the ant Allomerus decemarticulatus and an Ascomycota fungus. The plant shelters and provides the ants with extrafloral nectar. The ants protect the plant from herbivores and integrate the fungus into the construction of a trap that they use to capture prey; they also provide the fungus and their host plant with nutrients. During a 9-month field study, we over-provisioned experimental ant colonies with insects, enhancing colony fitness (i.e., more winged females were produced). The rate of partial castration of the host plant, previously demonstrated, was not influenced by the experiment. Experimental plants showed higher δ15N values (confirming myrmecotrophy), plus enhanced vegetative growth (e.g., more leaves produced increased the possibility of lodging ants in leaf pouches) and fitness (i.e., more fruits produced and more flowers that matured into fruit). This study highlights the importance of myrmecotrophy on host plant fitness and the stability of ant-myrmecophyte mutualisms. © 2013 Dejean et al.
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Delabie, J. H. C., Groc, S., & Dejean, A. (2011). The tramp ant technomyrmex vitiensis (Hymenoptera: Formicidae: Dolichoderinae) on South America. Fla. Entomol., 94(3), 688–689.
Abstract: Technomyrmex vitiensis is a tramp ant that has spread through many parts of the Old World tropics via human commerce. This species has been previously reported only once in the New World, from San Francisco, California. Here, we report the first records of T. vitiensis in South America, from two sites deep in the forest of French Guiana. It is not clear how these ants were transported to such remote sites, 100 km inland. Copyright © 2011 BioOne All rights reserved.
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Zhang, T., Bai, S. - L., Bardet, S., Almeras, T., Thibaut, B., & Beauchene, J. (2011). Radial variations of vibrational properties of three tropical woods. J. Wood Sci., 57(5), 377–386.
Abstract: The radial trends of vibrational properties, represented by the specific dynamic modulus (E′/ρ) and damping coefficient (tan δ), were investigated for three tropical rainforest hardwood species (Simarouba amara, Carapa procera, and Symphonia globulifera) using free-free flexural vibration tests. The microfibril angle (MFA) was estimated using X-ray diffraction. Consistent patterns of radial variations were observed for all studied properties. E′/ρ was found to decrease from pith to bark, which was strongly related to the increasing pith-bark trend of MFA. The variation of tan δ along the radius could be partly explained by MFA and partly by the gradient of extractives due to heartwood formation. The coupling effect of MFA and extractives could be separated through analysis of the log(tan δ) versus log(E′/ρ) diagram. For the species studied, the extractive content putatively associated with heartwood formation generally tends to decrease the wood damping coefficient. However, this weakening effect of extractives was not observed for the inner part of the heartwood, suggesting that the mechanical action of extractives was reduced during their chemical ageing. © 2011 The Japan Wood Research Society.
Keywords: Damping coefficient; Dynamic modulus; Extractives; Microfibril angle; Tropical woods
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Rodrigues, A. M., Amusant, N., Beauchene, J., Eparvier, V., Lemenager, N., Baudasse, C., et al. (2011). The termiticidal activity of Sextonia rubra (Mez) van der Werff (Lauraceae) extract and its active constituent rubrynolide. Pest Manage. Sci., 67(11), 1420–1423.
Abstract: Termites are degradation agents that inflict severe damage on wood. Some long-lasting Amazonian trees can resist these insects by producing toxic secondary metabolites. These metabolites could potentially replace synthetic termiticidal products which are becoming more restricted to use. Results: Sextonia rubra is resistant to termite-induced degradation. It has been demonstrated that this species naturally produces an ethyl-acetate-soluble termiticidal metabolite, rubrynolide, to protect its wood. Assays in the presence of tropical and invasive termites established that both rubrynolide and crude ethyl acetate extract from S. rubra wood can be used as a treatment for the protection of sensitive woods against termites. Conclusion: Rubrynolide and S. rubra extract are promising candidates for the replacement of synthetic termiticides. © 2011 Society of Chemical Industry.
Keywords: Nasutitermes macrocephalus; Reticulitermes flavipes; Rubrynolide; Sextonia rubra extract; Wood preservation
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