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Scotti, I.; Montaigne, W.; Cseke, K.; Traissac, S. |
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RaBoT: A rarefaction-by-bootstrap method to compare genome-wide levels of genetic diversity |
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Journal Article |
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2013 |
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Annals of Forest Science |
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Ann. Forest Sci. |
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70 |
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6 |
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631-635 |
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Diversity comparison; Genome scan; Genome-level diversity; Population genetics; Statistical testing |
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Context: No efficient method is available to compare multi-locus estimates of diversity while taking into account inter-locus and inter-population stochastic variance. The advent of genome scan approaches makes the development of such tests absolutely necessary. Aims: We developed a method to compare genome-wide diversity estimates while taking into account – and factoring out – variation in census size and making use of inter-locus variance to assess significance of differences in diversity levels. Methods: An approach based on rarefaction with bootstrap re-sampling (RaBoT) was implemented into a test of multi-locus comparison of diversity coded in R. The properties of the test were studied by applying it to simulated populations with varying diversity levels and varying differences in diversity levels. The test was then applied to empirical data from disturbed and undisturbed populations of Virola michelii (Myristicaceae) genotyped at 693 amplified fragment length polymorphism (AFLP) markers. Results: RaBoT was found to be rather conservative, with large numbers of false negatives when the diversity in the compared populations was similar, and false positives mostly associated to comparisons of populations with extremely high levels of diversity. When applied to empirical data, RaBoT detected higher genetic diversity in a post-disturbance than in an undisturbed population and lower genetic diversity in a seedling than in the corresponding adult population, but it also revealed differences in diversity between subgroups within the disturbed and undisturbed plots. Conclusion: RaBoT is a sensitive method to compare multi-locus levels of diversity that can be applied both at the genotype level for dominant markers (e.g. AFLP) and at the allele level for biallelic codominant markers (e.g. single-nucleotide polymorphisms). © 2013 INRA and Springer-Verlag France. |
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Unité Mixte de Recherche ecologie des Forêts de Guyane (EcoFoG), AgroParisTech, Kourou, French Guiana |
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Export Date: 30 August 2013; Source: Scopus; Coden: Afosf; doi: 10.1007/s13595-013-0302-z; Language of Original Document: English; Correspondence Address: Scotti, I.; Unité Mixte de Recherche ecologie des Forêts de Guyane (EcoFoG), INRA, Institut National de la Recherche Agronomique, BP 709, 97387 Kourou cedex, French Guiana; email: ivan.Scotti@ecofog.gf |
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EcoFoG @ webmaster @ |
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498 |
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Dezerald, O.; Leroy, C.; Corbara, B.; Carrias, J.-F.; Pélozuelo, L.; Dejean, A.; Céréghino, R. |
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Food-Web Structure in Relation to Environmental Gradients and Predator-Prey Ratios in Tank-Bromeliad Ecosystems |
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Journal Article |
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2013 |
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PLoS ONE |
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PLoS ONE |
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8 |
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8 |
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e71735 |
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Little is known of how linkage patterns between species change along environmental gradients. The small, spatially discrete food webs inhabiting tank-bromeliads provide an excellent opportunity to analyse patterns of community diversity and food-web topology (connectance, linkage density, nestedness) in relation to key environmental variables (habitat size, detrital resource, incident radiation) and predators:prey ratios. We sampled 365 bromeliads in a wide range of understorey environments in French Guiana and used gut contents of invertebrates to draw the corresponding 365 connectance webs. At the bromeliad scale, habitat size (water volume) determined the number of species that constitute food-web nodes, the proportion of predators, and food-web topology. The number of species as well as the proportion of predators within bromeliads declined from open to forested habitats, where the volume of water collected by bromeliads was generally lower because of rainfall interception by the canopy. A core group of microorganisms and generalist detritivores remained relatively constant across environments. This suggests that (i) a highly-connected core ensures food-web stability and key ecosystem functions across environments, and (ii) larger deviations in food-web structures can be expected following disturbance if detritivores share traits that determine responses to environmental changes. While linkage density and nestedness were lower in bromeliads in the forest than in open areas, experiments are needed to confirm a trend for lower food-web stability in the understorey of primary forests. © 2013 Dézerald et al. |
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EcoLab, Laboratoire Ecologie Fonctionnelle et Environnement, CNRS UMR 5245, Toulouse, France |
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Export Date: 30 August 2013; Source: Scopus; Art. No.: e71735; Coden: Polnc; doi: 10.1371/journal.pone.0071735; Language of Original Document: English; Correspondence Address: Dézerald, O.; EcoFoG, Ecologie des Forêts de Guyane, CNRS UMR 8172, Kourou, France; email: olivier.dezerald@gmail.com |
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Lenoir, A.; Devers, S.; Touchard, A.; Dejean, A. |
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The Guianese population of the fire ant Solenopsis saevissima is unicolonial |
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2016 |
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Insect Science |
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Insect Science |
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23 |
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5 |
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739-745 |
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biological invasions; cuticular hydrocarbons; fire ants; unicoloniality |
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In this study, conducted in French Guiana, a part of the native range of the fire ant Solenopsis saevissima, we compared the cuticular hydrocarbon profiles of media workers with previous results based on intraspecific aggressiveness tests. We noted a strong congruence between the two studies permitting us to delimit 2 supercolonies extending over large distances (up to 54 km), a phenomenon known as unicoloniality. Solenopsis geminata workers, taken as an out-group for cluster analyses, have a very different cuticular hydrocarbon profile. Because S. saevissima has been reported outside its native range, our conclusion is that this species has the potential to become invasive because unicoloniality (i.e., the main attribute for ants to become invasive) was shown at least for the Guianese population. © 2015 Institute of Zoology, Chinese Academy of Sciences |
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CNRS, Ecolab (UMR-CNRS 5245), Toulouse, France |
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Export Date: 3 October 2016 |
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EcoFoG @ webmaster @ |
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696 |
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Falkowski, M.; Jahn-Oyac, A.; Ferrero, E.; Issaly, J.; Eparvier, V.; Girod, R.; Rodrigues, A.M.S.; Stien, D.; Houel, E.; Dusfour, I. |
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Assessment of A Simple Compound-Saving Method to Study Insecticidal Activity of Natural Extracts and Pure Compounds Against Mosquito Larvae |
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2016 |
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Journal of the American Mosquito Control Association |
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Journal of the American Mosquito Control Association |
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32 |
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4 |
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337-340 |
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Mosquitoes; natural insecticides; screening method |
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Research on natural insecticides has intensified with the spread of resistance to chemicals among insects, particularly disease vectors. To evaluate compounds, the World Health Organization (WHO) has published standardized procedures. However, those may be excessively compound-consuming when it comes to assessing the activity of natural extracts and pure compounds isolated in limited amount. As part of our work on the discovery of new mosquito larvicides from Amazonian plants, we developed a compound-saving assay in 5-ml glass tubes instead of WHO larval 100-ml cups. Comparing activity of synthetic and natural chemicals validated the glass tube assay. Raw data, lethal doses that kill 50% (LD50) and 90% (LD90) at 24 and 48 h, were highly correlated (0.68 < R2 < 0.96, P < 0.001, Pearson test) between cups and tubes. It was also established that 10 tubes (N = 50 larvae) provided the same level of sensitivity as 20 tubes (N = 100). This method proved suitable for rapid screening of natural extracts and molecules, identifying active compounds using 10 times less material than in the WHO protocol. © 2016 by The American Mosquito Control Association, Inc. |
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Sorbonne Universites, UPMC, Universite Paris 06, CNRS, Laboratoire de Biodiversite et Biotechnologies Microbiennes (USR 3579, LBBM), Observatoire Oceanologique, avenue de Fontaul e, Banyuls/Mer-sur-mer, France |
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Export Date: 3 March 2017 |
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740 |
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Aubry-Kientz, M.; Rossi, V.; Boreux, J.-J.; Herault, B. |
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A joint individual-based model coupling growth and mortality reveals that tree vigor is a key component of tropical forest dynamics |
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2015 |
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Ecology and Evolution |
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Ecology and Evolution |
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5 |
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12 |
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2457-2465 |
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Bayesian framework; Estimation method; Individual-based model; Linked models; Mcmc; Paracou; Tropical forest dynamic |
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Tree vigor is often used as a covariate when tree mortality is predicted from tree growth in tropical forest dynamic models, but it is rarely explicitly accounted for in a coherent modeling framework. We quantify tree vigor at the individual tree level, based on the difference between expected and observed growth. The available methods to join nonlinear tree growth and mortality processes are not commonly used by forest ecologists so that we develop an inference methodology based on an MCMC approach, allowing us to sample the parameters of the growth and mortality model according to their posterior distribution using the joint model likelihood. We apply our framework to a set of data on the 20-year dynamics of a forest in Paracou, French Guiana, taking advantage of functional trait-based growth and mortality models already developed independently. Our results showed that growth and mortality are intimately linked and that the vigor estimator is an essential predictor of mortality, highlighting that trees growing more than expected have a far lower probability of dying. Our joint model methodology is sufficiently generic to be used to join two longitudinal and punctual linked processes and thus may be applied to a wide range of growth and mortality models. In the context of global changes, such joint models are urgently needed in tropical forests to analyze, and then predict, the effects of the ongoing changes on the tree dynamics in hyperdiverse tropical forests. © 2015 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. |
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Département des Sciences et Gestion de l'environnement, Université de Liège, Arlon, Belgium |
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Export Date: 3 July 2015 |
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608 |
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Paine, C.E.T.; Amissah, L.; Auge, H.; Baraloto, C.; Baruffol, M.; Bourland, N.; Bruelheide, H.; Daïnou, K.; de Gouvenain, R.C.; Doucet, J.-L.; Doust, S.; Fine, P.V.A.; Fortunel, C.; Haase, J.; Holl, K.D.; Jactel, H.; Li, X.; Kitajima, K.; Koricheva, J.; Martínez-Garza, C.; Messier, C.; Paquette, A.; Philipson, C.; Piotto, D.; Poorter, L.; Posada, J.M.; Potvin, C.; Rainio, K.; Russo, S.E.; Ruiz-Jaen, M.; Scherer-Lorenzen, M.; Webb, C.O.; Wright, S.J.; Zahawi, R.A.; Hector, A. |
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Globally, functional traits are weak predictors of juvenile tree growth, and we do not know why |
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2015 |
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Journal of Ecology |
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Journal of Ecology |
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103 |
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4 |
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978-989 |
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Functional ecology; FunDivEurope; Growth; Hierarchical models; Plant population and community dynamics; Relative growth rate; Size-standardized growth rate; TreeDivNet |
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Plant functional traits, in particular specific leaf area (SLA), wood density and seed mass, are often good predictors of individual tree growth rates within communities. Individuals and species with high SLA, low wood density and small seeds tend to have faster growth rates. If community-level relationships between traits and growth have general predictive value, then similar relationships should also be observed in analyses that integrate across taxa, biogeographic regions and environments. Such global consistency would imply that traits could serve as valuable proxies for the complex suite of factors that determine growth rate, and, therefore, could underpin a new generation of robust dynamic vegetation models. Alternatively, growth rates may depend more strongly on the local environment or growth-trait relationships may vary along environmental gradients. We tested these alternative hypotheses using data on 27 352 juvenile trees, representing 278 species from 27 sites on all forested continents, and extensive functional trait data, 38% of which were obtained at the same sites at which growth was assessed. Data on potential evapotranspiration (PET), which summarizes the joint ecological effects of temperature and precipitation, were obtained from a global data base. We estimated size-standardized relative height growth rates (SGR) for all species, then related them to functional traits and PET using mixed-effect models for the fastest growing species and for all species together. Both the mean and 95th percentile SGR were more strongly associated with functional traits than with PET. PET was unrelated to SGR at the global scale. SGR increased with increasing SLA and decreased with increasing wood density and seed mass, but these traits explained only 3.1% of the variation in SGR. SGR-trait relationships were consistently weak across families and biogeographic zones, and over a range of tree statures. Thus, the most widely studied functional traits in plant ecology were poor predictors of tree growth over large scales. Synthesis. We conclude that these functional traits alone may be unsuitable for predicting growth of trees over broad scales. Determining the functional traits that predict vital rates under specific environmental conditions may generate more insight than a monolithic global relationship can offer. The most widely studied functional traits in plant ecology, specific leaf area, wood density and seed mass, were only weakly associated with tree growth rates over broad scales. Assessing trait-growth relationships under specific environmental conditions may generate more insight than a global relationship can offer. © 2015 British Ecological Society. |
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Department of Plant Sciences, University of Oxford, Oxford, United Kingdom |
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Export Date: 3 July 2015 |
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609 |
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Molto, Q.; Herault, B.; Boreux, J.-J.; Daullet, M.; Rousteau, A.; Rossi, V. |
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Predicting tree heights for biomass estimates in tropical forests -A test from French Guiana |
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Journal Article |
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2014 |
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Biogeosciences |
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Biogeosciences |
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11 |
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12 |
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3121-3130 |
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The recent development of REDD+ mechanisms requires reliable estimation of carbon stocks, especially in tropical forests that are particularly threatened by global changes. Even though tree height is a crucial variable for computing aboveground forest biomass (AGB), it is rarely measured in large-scale forest censuses because it requires extra effort. Therefore, tree height has to be predicted with height models. The height and diameter of all trees over 10 cm in diameter were measured in 33 half-hectare plots and 9 one-hectare plots throughout northern French Guiana, an area with substantial climate and environmental gradients. We compared four different model shapes and found that the Michaelis-Menten shape was most appropriate for the tree biomass prediction. Model parameter values were significantly different from one forest plot to another, and this leads to large errors in biomass estimates. Variables from the forest stand structure explained a sufficient part of plot-to-plot variations of the height model parameters to improve the quality of the AGB predictions. In the forest stands dominated by small trees, the trees were found to have rapid height growth for small diameters. In forest stands dominated by larger trees, the trees were found to have the greatest heights for large diameters. The aboveground biomass estimation uncertainty of the forest plots was reduced by the use of the forest structure-based height model. It demonstrated the feasibility and the importance of height modeling in tropical forests for carbon mapping. When the tree heights are not measured in an inventory, they can be predicted with a height-diameter model and incorporating forest structure descriptors may improve the predictions. © Author(s) 2014. CC Attribution 3.0 License. |
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Université de Liège, Liège, Belgium |
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European Geosciences Union |
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Export Date: 3 July 2014; Correspondence Address: Molto, Q.; Université des Antilles et de la Guyane, UMR Ecologie des Forêts de Guyane, Kourou, France; email: quentin.molto@gmail.com |
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Fanin, N.; Barantal, S.; Fromin, N.; Schimann, H.; Schevin, P.; Hattenschwiler, S. |
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Distinct Microbial Limitations in Litter and Underlying Soil Revealed by Carbon and Nutrient Fertilization in a Tropical Rainforest |
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2012 |
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PLoS ONE |
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7 |
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12 |
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e49990 |
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Human-caused alterations of the carbon and nutrient cycles are expected to impact tropical ecosystems in the near future. Here we evaluated how a combined change in carbon (C), nitrogen (N) and phosphorus (P) availability affects soil and litter microbial respiration and litter decomposition in an undisturbed Amazonian rainforest in French Guiana. In a fully factorial C (as cellulose), N (as urea), and P (as phosphate) fertilization experiment we analyzed a total of 540 litterbag-soil pairs after a 158-day exposure in the field. Rates of substrate-induced respiration (SIR) measured in litter and litter mass loss were similarly affected by fertilization showing the strongest stimulation when N and P were added simultaneously. The stimulating NP effect on litter SIR increased considerably with increasing initial dissolved organic carbon (DOC) concentrations in litter, suggesting that the combined availability of N, P, and a labile C source has a particularly strong effect on microbial activity. Cellulose fertilization, however, did not further stimulate the NP effect. In contrast to litter SIR and litter mass loss, soil SIR was reduced with N fertilization and showed only a positive effect in response to P fertilization that was further enhanced with additional C fertilization. Our data suggest that increased nutrient enrichment in the studied Amazonian rainforest can considerably change microbial activity and litter decomposition, and that these effects differ between the litter layer and the underlying soil. Any resulting change in relative C and nutrient fluxes between the litter layer and the soil can have important consequences for biogeochemical cycles in tropical forest ecosystems. © 2012 Fanin et al. |
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UMR Ecologie des Forêts de Guyane (EcoFoG), Campus Agronomique, Kourou, French Guiana |
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Export Date: 3 January 2013; Source: Scopus; Art. No.: e49990 |
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Maia, A.C.D.; Gibernau, M.; Carvalho, A.T.; Gonçalves, E.G.; Schlindwein, C. |
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The cowl does not make the monk: Scarab beetle pollination of the Neotropical aroid Taccarum ulei (Araceae: Spathicarpeae) |
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2013 |
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Biological Journal of the Linnean Society |
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108 |
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1 |
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22-34 |
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Flower predation; Nocturnal pollinators; Pollination syndromes; Scarabaeidae; Thermogenesis |
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Taccarum ulei (Araceae, Spathicarpeae) is a seasonal geophytic aroid, native to north-eastern Brazil, that flowers during two months of the rainy season. Patterns of floral thermogenesis, pollination biology, and floral traits associated with pollination syndromes were studied and compared with those of other Araceae. Two species of cyclocephaline scarabs (Scarabaeidae, Cyclocephalini) were recognized as effective pollinators: Cyclocephala celata and Cyclocephala cearae. Larvae of an unidentified species of fruit fly (Melanolomaspp., Richardiidae, Diptera) were also frequently observed in inflorescences at various maturation stages, feeding on the connectives of male florets and fruits, and thus lowering the reproductive success of individual plants. Beetles were attracted by odoriferous inflorescences in the early evening of the first day of anthesis, during the female phase. The emission of attractive volatiles was coupled with intense thermogenic activity in the entire spadix, unlike other aroids in which only certain zones of the spadix heat up. Pollen release, which marks the beginning of the male phase on the subsequent evening, was not related to floral thermogenesis. Comparative multivariate analysis of the floral traits of T.ulei points to a beetle-pollinated aroid, although some of the observed traits of the species are not common to other taxa sharing this pollination strategy. Such incongruence might be explained by the evolutionary history of the tribe Spathicarpeae and potential pollinator shifts. © 2012 The Linnean Society of London. |
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Departamento de Botânica, Universidade Federal de Minas Gerais, Belo Horizonte, 31270-901, Brazil |
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Export Date: 3 January 2013; Source: Scopus |
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EcoFoG @ webmaster @ |
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453 |
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Author |
Barabe, D.; Cuerrier, A.; Quilichini, A. |
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Title |
Botanical gardens: Between science and commercialization |
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2012 |
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Natures Sciences Societes |
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20 |
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3 |
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334-342 |
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Abstract |
Les jardins botaniques: Entre science et commercialisation. |
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Enseignante-chercheure en Écologie, CNRS, UMR8172 Icologie des Dorêts de Guyane, 97387 Kourou, France |
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Export Date: 3 January 2013; Source: Scopus |
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EcoFoG @ webmaster @ |
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455 |
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| Permanent link to this record |
