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Author |
Phillips, P.D.; de Azevedo, C.P.; Degen, B.; Thompson, I.S.; Silva, J.N.M.; van Gardingen, P.R. |
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Title |
An individual-based spatially explicit simulation model for strategic forest management planning in the eastern Amazon |
Type |
Journal Article |
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Year |
2004 |
Publication |
Ecological Modelling |
Abbreviated Journal |
Ecol. Model. |
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Volume |
173 |
Issue |
4 |
Pages |
335-354 |
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Keywords |
model; individual; tropical forest; tree; spatial; Brazil; Amazon; competition; species grouping; management; certification; regulation |
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Abstract |
A model to simulate the ecological processes of tree growth, mortality and recruitment, and the processes of forest management, in the terra firme forests of the eastern Amazon is described. It is implemented within the SYMFOR (http://www.symfor.org) framework. It is based on measurements of all trees that have a diameter greater than 5 cm from experimental plots in the Jari Cellulose and Tapajos National Forest areas over a 16-year period. Ten species groups are used to describe the natural processes affecting tree behaviour. Growth rates are calculated for each species group using the tree diameter and a competition index. Mortality and recruitment are simulated as stochastic processes. Recruitment probability is based on the predicted growth rate of a hypothetical tree. Options exist to vary the human interaction with the forest reflecting forest management decisions, as for other SYMFOR models. Model evaluation compares the performance of the model with data describing forest recovery for 16 years following logging. The model was applied to simulate current forest management practice in the Brazilian Amazon, with 40 m(3) ha(-1) of timber extracted with a cutting cycle of 30 years. Results show that yields are sustained for three harvests following the first logging of primary forest, but that the composition of timber moves towards lightwooded species rather than hardwooded. The predicted size of extracted trees decreases and the number of trees extracted increases with successive harvests, leading to a prediction of increased costs and lower profits for the logging company despite constant yields. The standing volume of all trees just before harvest is reduced by 15% over 150 years, with pioneer species becoming increasingly prevalent in the stand. The model, in the SYMFOR framework, can be used to help understand the differences between alternative forest management strategies in the Brazilian Amazon. Such knowledge is required to improve forest management, regulation and certification, and help to conserve the worlds largest remaining tropical forest. (C) 2003 Elsevier B.V. All rights reserved. |
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Address |
EMBRAPA Amazonia Oriental, BR-69011970 Manaus, Amazonas, Brazil, Email: Paul.Phillips@envams.co.uk |
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ELSEVIER SCIENCE BV |
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ISSN |
0304-3800 |
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Notes  |
ISI:000220392200002 |
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no |
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Call Number |
EcoFoG @ eric.marcon @ |
Serial |
238 |
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Author |
Le Guen, V.; Rodier-Goud, M.; Troispoux, V.; Xiong, T.C.; Brottier, P.; Billot, C.; Seguin, M. |
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Title |
Characterization of polymorphic microsatellite markers for Microcyclus ulei, causal, agent of South American leaf blight of rubber trees |
Type |
Journal Article |
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Year |
2004 |
Publication |
Molecular Ecology Notes |
Abbreviated Journal |
Mol. Ecol. Notes |
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Volume |
4 |
Issue |
1 |
Pages |
122-124 |
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Keywords |
Hevea brasiliensis; Microcyclus ulei; microsatellite markers; phytopathogenic fungi; South American leaf blight |
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Abstract |
South American leaf blight caused by the ascomycete Microcyclus Wei is the most harmful disease of the rubber tree in Latin America and a potential threat to Asiatic and African natural rubber production. Until now, the variability of this fungus was assessed through observation of pathogenicity of isolates on a range of rubber tree clones with known resistance reactions. The present study describes the process used to design 11 microsatellite markers and evaluates their usefulness in detecting genetic polymorphism. Nine of these markers were polymorphic among six isolates from Brazil (with two to three alleles per locus) and five markers were polymorphic among four isolates from French Guiana (with two to four alleles per locus). |
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Address |
CIRAD, F-97387 Kourou, France, Email: vincent.le_guen@cirad.fr |
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BLACKWELL PUBLISHING LTD |
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ISSN |
1471-8278 |
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Notes |
ISI:000189159500037 |
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no |
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Call Number |
EcoFoG @ eric.marcon @ |
Serial |
265 |
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Author |
de Grandcourt, A.; Epron, D.; Montpied, P.; Louisanna, E.; Bereau, M.; Garbaye, J.; Guehl, J.M. |
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Title |
Contrasting responses to mycorrhizal inoculation and phosphorus availability in seedlings of two tropical rainforest tree species |
Type |
Journal Article |
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Year |
2004 |
Publication |
New Phytologist |
Abbreviated Journal |
New Phytol. |
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Volume |
161 |
Issue |
3 |
Pages |
865-875 |
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Keywords |
phosphorus; growth; efficiency; Paris-type arbuscular mycorrhizas; tropical rainforest; seedlings; Dicorynia guianensis; Eperua falcata |
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Abstract |
This work aimed at understanding the role of mycorrhizal status in phosphorus efficiency of tree seedlings in the tropical rainforest of French Guyana. Mycorrhizal colonization, growth, phosphorus content, net photosynthesis and root respiration were determined on three occasions during a 9-month growth period for seedlings of two co-occurring species (Dicorynia guianensis and Eperua falcata) grown at three soil phosphorus concentrations, with or without inoculation with arbuscular mycorrhizas. Seedlings of both species were unable to absorb phosphorus in the absence of mycorrhizal association. Mycorrhizal seedlings exhibited coils that are specific of Paris-type mycorrhizae. Both species benefited from the mycorrhizal symbiosis in terms of phosphorus acquisition but the growth of E. falcata seedlings was unresponsive to this mycorrhizal improvement of phosphorus status, probably because of the combination of high seed mass and P reserves, with low growth rate. The two species belong to two different functional groups regarding phosphorus acquisition, D. guianensis being an obligate mycotrophic species. |
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Address |
Univ Franche Comte, Lab Biol & Ecophysiol, F-25211 Montbeliard, France, Email: daniel.epron@scbiol.uhp-nancy.fr |
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Publisher |
BLACKWELL PUBLISHING LTD |
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ISSN |
0028-646X |
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Notes |
ISI:000188646500022 |
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no |
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Call Number |
EcoFoG @ eric.marcon @ |
Serial |
239 |
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Author |
Dutech, C.; Joly, H.I.; Jarne, P. |
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Title |
Gene flow, historical population dynamics and genetic diversity within French Guianan populations of a rainforest tree species, Vouacapoua americana |
Type |
Journal Article |
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Year |
2004 |
Publication |
Heredity |
Abbreviated Journal |
Heredity |
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Volume |
92 |
Issue |
2 |
Pages |
69-77 |
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Keywords |
bottleneck; climatic change; extinction-recolonization; microsatellite; neotropical rainforest; pollen and seed dispersal |
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Abstract |
Both gene flow and historical events influence the genetic diversity of natural populations. One way to understand their respective impact is to analyze population genetic structure at large spatial scales. We studied the distribution of genetic diversity of 17 populations of Vouacapoua americana (Caesalpiniaceae) in French Guiana, using nine micro satellite loci. Low genetic diversity was observed within populations, with a mean allelic richness and gene diversity of 4.1 and 0.506, respectively, which could be due to low effective population size and/or past bottlenecks. Using the regression between F-st/(1-F-st), estimated between pairs of populations, and the logarithm of the geographical distance, the spatial genetic structure can partly be explained by isolation-by-distance and limited gene flow among populations. This result is in agreement with the species' biology, including seed and pollen dispersal by rodents and insects, respectively. In contrast, no clear genetic signal of historical events was found when examining genetic differentiation among populations in relation to biogeographical hypotheses or by testing for bottlenecks within populations. Our conclusion is that nuclear spatial genetic structure of V. americana, at the geographic scale of French Guiana, is better explained by gene flow rather than by historical events. |
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Address |
Cirad Foret Silvolab, Lab Genet & Ecol Mol, F-97387 Kourou, France, Email: cdutech@bordeaux.inra.fr |
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Publisher |
NATURE PUBLISHING GROUP |
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ISSN |
0018-067X |
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Notes |
ISI:000188431700003 |
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no |
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Call Number |
EcoFoG @ eric.marcon @ |
Serial |
240 |
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Author |
Dutech, C.; Maggia, L.; Tardy, C.; Joly, H.I.; Jarne, P. |
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Title |
Tracking a genetic signal of extinction-recolonization events in a neotropical tree species: Vouacapoua americana aublet in french guiana |
Type |
Journal Article |
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Year |
2003 |
Publication |
Evolution |
Abbreviated Journal |
Evolution |
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Volume |
57 |
Issue |
12 |
Pages |
2753-2764 |
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Keywords |
allelic richness; caesalpinioideae; chloroplast DNA; climatic changes; cytonuclear disequilibrium; legummosae; microsatellite loci; tropical rainforest |
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Abstract |
Drier periods from the late Pleistocene and early Holocene have been hypothesized to have caused the disappearance of various rainforest species over large geographical areas in South America and restricted the extant populations to mesic sites. Subsequent improvement in climatic conditions has been associated with recolonization. Changes in population size associated with these extinction-recolonization events should have affected genetic diversity within species. However, these historical hypotheses and their genetic consequences have rarely been tested in South America. Here, we examine the diversity of the chloroplast and nuclear genomes in a Neotropical rainforest tree species, Vouacapoua americana (Leguminosae, Caesalpinioideae) in French Guiana. The chloroplast diversity was analyzed using a polymerase chain reaction-restriction fragment length polymorphism method (six pairs of primers) in 29 populations distributed over most of French Guiana, and a subset of 17 populations was also analyzed at nine polymorphic microsatellite loci. To determine whether this species has experienced extinction-recolonization, we sampled populations in areas supposedly not or only slightly affected by climatic changes, where the populations would not have experienced frequent extinction, and in areas that appear to have been recently recolonized. In the putatively recolonized areas, we found patches of several thousands of hectares homogeneous for chloroplast variation that can be interpreted as the effect of recolonization processes from several geographical origins. In addition, we observed that, for both chloroplast and nuclear genomes, the populations in newly recolonized areas exhibited a significantly smaller allelic richness than others. Controlling for geographic distance, we also detected a significant correlation between chloroplast and nuclear population differentiation. This result indicates a cytonuclear disequilibrium that can be interpreted as a historical signal of a genetic divergence between fragmented populations. In conclusion, the spatial genetic structure of contemporary V. americana populations shows evidence that this species has experienced large extinction-recolonization events, which were possibly caused by past climatic change. |
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Address |
CIRAD Foret, Silvolab, Ecol Mol, F-97387 Kourou, France, Email: laruent.maggia@cirad.fr |
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Publisher |
SOC STUDY EVOLUTION |
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ISSN |
0014-3820 |
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Notes |
ISI:000188061800007 |
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no |
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Call Number |
EcoFoG @ eric.marcon @ |
Serial |
241 |
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Author |
Gond, V.; Bartholome, E.; Ouattara, F.; Nonguierma, A.; Bado, L. |
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Title |
Monitoring and mapping of waters and wetlands in arid regions using the SPOT-4 VEGETATION imaging system |
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Journal Article |
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Year |
2004 |
Publication |
International Journal of Remote Sensing |
Abbreviated Journal |
Int. J. Remote Sens. |
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Volume |
25 |
Issue |
5 |
Pages |
987-1004 |
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Abstract |
Monitoring the state of small waterbodies and wetlands is very useful in dry regions, because their existence is entirely controlled by the rhythm of local rainfall. On VEGETATION image colour composites, waterbodies and marshy vegetation show up clearly. Yet simple image classification does not yield sufficiently good results because 'spectral signatures' vary significantly together with the ecological conditions of these surfaces. A robust contextual procedure taking into account local contrast was successfully developed and tested. A systematic validation was carried out and a map of waterbodies and wetlands was produced for Burkina Faso and neighbouring regions. |
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Address |
Ctr Commun Rech, I-21020 Ispra, VA, Italy, Email: valery.gond@cirad.fr |
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Publisher |
TAYLOR & FRANCIS LTD |
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ISSN |
0143-1161 |
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Notes |
ISI:000187996500007 |
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no |
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Call Number |
EcoFoG @ eric.marcon @ |
Serial |
266 |
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Author |
Scotti-Saintagne, C.; Bodenes, C.; Barreneche, T.; Pot, D.; Plomion, C.; Kremer, A. |
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Title |
Distribution of genomic regions differentiating oak species assessed by QTL detection |
Type |
Journal Article |
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Year |
2004 |
Publication |
Heredity |
Abbreviated Journal |
Heredity |
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Volume |
92 |
Issue |
1 |
Pages |
20-30 |
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Keywords |
QTL; leaf morphology; repeatability; genetic map; Q. robur |
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Abstract |
Pedunculate oak and sessile oak are two sympatric inter-fertile species that exhibit leaf morphological differences. We aimed to detect quantitative trait loci (QTLs) of these traits in order to locate genomic regions involved in species differentiation. A total of 15 leaf morphological traits were assessed in a mixed forest stand composed of Quercus petraea and Q. robur and in a full-sib pedigree of Q. robur. The progeny of the full-sib family were vegetatively propagated in two successive experiments comprising 174 and 216 sibs, and assessments were made on two leaves collected on each of the 1080 and 1530 cuttings corresponding to the two experiments. Traits that exhibited strong species differences in the mixed stand tended also to have higher repeatability values in the mapping population, thus indicating higher genetic control. A genetic map was constructed for QTL detection. Composite interval mapping with the one QTL model was used for QTL detection. From one to three QTLs were detected for 13 traits. In-depth analysis of the QTLs, controlling the five morphological traits that exhibited the highest interspecific differences in the mixed stand, indicated that they were distributed on six linkage groups, with two clusters comprising QTLs of at least two discriminant traits. These results were reinforced when error 1 for QTL detection was set at 5% at the chromosome level, as up to nine clusters could be identified. In conclusion, traits involved in interspecific differentiation of oaks are under polygenic control and widespread in clusters across the genome. |
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Address |
INRA, UMR Biodivers Genes & Ecosyst, F-33612 Cestas, France |
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Publisher |
NATURE PUBLISHING GROUP |
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0018-067X |
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Notes |
ISI:000187216300005 |
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no |
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Call Number |
EcoFoG @ eric.marcon @ |
Serial |
267 |
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Author |
Yazdani, R.; Scotti, I.; Jansson, G.; Plomion, C.; Mathur, G. |
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Title |
Inheritance and diversity of simple sequence repeat (SSR) microsatellite markers in various families of Picea abies |
Type |
Journal Article |
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Year |
2003 |
Publication |
Hereditas |
Abbreviated Journal |
Hereditas |
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Volume |
138 |
Issue |
3 |
Pages |
219-227 |
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Abstract |
A large number of sequence-specific SSRs were screened by using electrophoresis on metaphore agarose gels with the bands visualized by ethidium bromide staining. Many SSRs appeared as codominant and many as dominant markers, with presence or absence of bands. A simple Mendelian inheritance pattern for most codominant and dominant SSR loci was found. For many codominant SSR markers, null alleles were detected. The proportion of dominant microsatellites detected in this study (close to 50 %) was much higher than that commonly reported in many other studies. A high proportion of dominant markers together with a high frequency of codominant markers with null alleles may represent two important limitations for the use of microsatellites in different studies. On the other hand, many polymorphic codominant SSR microsatellite markers were found to be highly repeatable, and can be used for population studies, seed certification, quality control of controlled crosses, paternity analysis, pollen contamination, and mapping of QTL in related families. In this paper, we report on the inheritance pattern and diversity of codominant and dominant SSR microsatellites in seven families of Picea abies sharing a common mother. |
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Address |
Swedish Univ Agr Sci, Dept Plant Biol & Forest Genet, Uppsala, Sweden |
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Publisher |
BLACKWELL MUNKSGAARD |
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ISSN |
0018-0661 |
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Notes |
ISI:000187074000010 |
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no |
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EcoFoG @ eric.marcon @ |
Serial |
268 |
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Author |
Koponen, P.; Nygren, P.; Domenach, A.M.; Le Roux, C.; Saur, E.; Roggy, J.C. |
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Title |
Nodulation and dinitrogen fixation of legume trees in a tropical freshwater swamp forest in French Guiana |
Type |
Journal Article |
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Year |
2003 |
Publication |
Journal of Tropical Ecology |
Abbreviated Journal |
J. Trop. Ecol. |
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Volume |
19 |
Issue |
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Pages |
655-666 |
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Keywords |
acetylene reduction assay; Bradyrhizobium; flooding; microtopography; N-15 natural abundance method; 16S rDNA sequencing |
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Abstract |
Nodulated legume trees comprised 43% of the stand basal area in the low, most frequently flooded microsites, and 23% in higher, drier microsites in a tropical freshwater swamp forest in French Guiana. Dinitrogen fixation in Pterocarpus officinalis, Hydrochorea corymbosa and Inga pilosula was confirmed by acetylene reduction assay (ARA), presence of leghaemoglobin in nodules and the N-15 natural abundance method. The results for Zygia cataractae were inconclusive but suggested N-2 fixation in drier microsites. Nodulated Inga disticha had a N-15-to-N-14 ratio similar to non-N-2-fixing trees, but ARA indicated nitrogenase activity and leghaemoglobin was present in nodules. All bacterial strains were identified as Bradyrhizobium spp. according to the partial 16S rDNA sequences, and they were infective in vitro in the model species Macroptilium atropurpuretan. About 35-50% of N in the leaves of P. officinalis, H. corymbosa and I. pilosula was fixed from the atmosphere. Dinitrogen fixation was estimated to contribute at least 8-13% and 1728% to whole-canopy N in high and low microsites, respectively. Symbiotic N, fixation appears to provide both a competitive advantage to legume trees under N-limited, flooded conditions and an important N input to neotropical freshwater swamp forests. |
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Address |
Univ Helsinki, Dept Forest Ecol, FIN-00014 Helsinki, Finland |
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Publisher |
CAMBRIDGE UNIV PRESS |
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ISSN |
0266-4674 |
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Notes |
ISI:000186710800005 |
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no |
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Call Number |
EcoFoG @ eric.marcon @ |
Serial |
242 |
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Author |
Clair, B.; Jaouen, G.; Beauchene, J.; Fournier, M. |
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Title |
Mapping radial, tangential and longitudinal shrinkages and relation to tension wood in discs of the tropical tree Symphonia globulifera |
Type |
Journal Article |
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Year |
2003 |
Publication |
Holzforschung |
Abbreviated Journal |
Holzforschung |
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Volume |
57 |
Issue |
6 |
Pages |
665-671 |
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Keywords |
drying shrinkage; tension wood; Symphonia globulifera L. f. |
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Abstract |
A method for measuring shrinkage resulting from drying in the three anisotropic directions is developed and tested. Measurements are performed on sawn discs, a technique which simplifies preparation and enables large numbers of measurements. Shrinkage values can be represented as a map of the disc surface. The results indicate that comparisons between shrinkage distribution and tension wood distribution on the discs show a clear relationship and can be measured with relatively high accuracy in reference to the shrinkage map. In the long term, this method could be useful in the timber industry as a means for choosing the direction in which logs are cut depending on their type of wood composition. |
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Address |
CIRAD ENGREF INRA, UMR Ecol Forets Guyane, Kourou 97379, French Guiana |
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Publisher |
WALTER DE GRUYTER & CO |
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ISSN |
0018-3830 |
ISBN |
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Notes |
ISI:000186257800016 |
Approved |
no |
|
| |
Call Number |
EcoFoG @ eric.marcon @ |
Serial |
243 |
|
| Permanent link to this record |
