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Author Fu, T.; Houel, E.; Amusant, N.; Touboul, D.; Genta-Jouve, G.; Della-Negra, S.; Fisher, G.L.; Brunelle, A.; Duplais, C.
Title Biosynthetic investigation of γ-lactones in Sextonia rubra wood using in situ TOF-SIMS MS/MS imaging to localize and characterize biosynthetic intermediates Type Journal Article
Year 2019 Publication Scientific Reports Abbreviated Journal Sci. Rep.
Volume 9 Issue Pages 1928
Keywords
Abstract Molecular analysis by parallel tandem mass spectrometry (MS/MS) imaging contributes to the in situ characterization of biosynthetic intermediates which is crucial for deciphering the metabolic pathways in living organisms. We report the first use of TOF-SIMS MS/MS imaging for the cellular localization and characterization of biosynthetic intermediates of bioactive γ-lactones rubrynolide and rubrenolide in the Amazonian tree Sextonia rubra (Lauraceae). Five γ-lactones, including previously reported rubrynolide and rubrenolide, were isolated using a conventional approach and their structural characterization and localization at a lateral resolution of ~400 nm was later achieved using TOF-SIMS MS/MS imaging analysis. 2D/3D MS imaging at subcellular level reveals that putative biosynthetic γ-lactones intermediates are localized in the same cell types (ray parenchyma cells and oil cells) as rubrynolide and rubrenolide. Consequently, a revised metabolic pathway of rubrynolide was proposed, which involves the reaction between 2-hydroxysuccinic acid and 3-oxotetradecanoic acid, contrary to previous studies suggesting a single polyketide precursor. Our results provide insights into plant metabolite production in wood tissues and, overall, demonstrate that combining high spatial resolution TOF-SIMS imaging and MS/MS structural characterization offers new opportunities for studying molecular and cellular biochemistry in plants. © 2019, The Author(s).
Address Physical Electronics, Chanhassen, MN 55317, United States
Corporate Author Thesis
Publisher Nature Publishing Group Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 20452322 (Issn) ISBN Medium
Area Expedition Conference
Notes (down) Approved no
Call Number EcoFoG @ webmaster @ Serial 866
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Author Leponce, M.;Delabie, J.H.C.;Orivel, J.;Jacquemin, J.;Calvo Martin, M.;Dejean, A.
Title Tree-dwelling ant survey (Hymenoptera, Formicidae) in Mitaraka, French Guiana Type Journal Article
Year 2019 Publication Zoosystema Abbreviated Journal
Volume 40 Issue sp1 Pages 163-179
Keywords
Abstract Ants constitute a substantial part of the arthropod biomass in rainforests. Most studies have focused on ground-dwelling ants, which constitute almost half of the diversity of the ant assemblage. We report here the results of the first survey of tree-dwelling ants in French Guiana on a plateau and in a swamp palm forest (Euterpe oleracea Mart.) in the Mitaraka Mountains. We were interested in seeing the effect of topography and geographic distance on species richness and composition and to gather information on the species distribution on tree trunks. The fauna of Mitaraka was compared with one from a site 350 km distant (Petit Saut). In total 105 trees were sampled (30, 30, 45 in the plateau and the swamp forests of Mitaraka, and in Petit Saut plateau forest, respectively). Arboreal ants were attracted using tuna and honey baits spread along a rope reaching an upper branch, except for the palm swamp forest where the baits were only placed at 2 m high. A total of 34, 13 and 22 species were observed in these three respective sites. Six of these species are new records for French Guiana. In Mitaraka Camponotus femoratus (Fabricius, 1804) and Crematogaster leviorLongino, 2003 co-occurred on trees (parabiotic association) and were among the most common species, along with Crematogaster tenuiculaForel, 1904 which was found on other trees (species exclusion). The Mitaraka Mountains appeared more species rich and had a species composition distinct from Petit Saut. Topography also influenced ant species composition. Almost half of the species collected by the baitline method were exclusively foraging in the canopy.
Address
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area Expedition Conference
Notes (down) Approved no
Call Number EcoFoG @ webmaster @ Serial 883
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Author Peguero, G.; Sardans, J.; Asensio, D.; Fernández-Martínez, M.; Gargallo-Garriga, A.; Grau, O.; Llusià, J.; Margalef, O.; Márquez, L.; Ogaya, R.; Urbina, I.; Courtois, E.A.; Stahl, C.; Van Langenhove, L.; Verryckt, L.T.; Richter, A.; Janssens, I.A.; Peñuelas, J.
Title Nutrient scarcity strengthens soil fauna control over leaf litter decomposition in tropical rainforests Type Journal Article
Year 2019 Publication Proceedings. Biological sciences Abbreviated Journal Proc. Biol. Sci.
Volume 286 Issue 1910 Pages 20191300
Keywords biogeochemistry; extracellular enzyme activity; litter decomposition; nutrients; soil fauna
Abstract Soil fauna is a key control of the decomposition rate of leaf litter, yet its interactions with litter quality and the soil environment remain elusive. We conducted a litter decomposition experiment across different topographic levels within the landscape replicated in two rainforest sites providing natural gradients in soil fertility to test the hypothesis that low nutrient availability in litter and soil increases the strength of fauna control over litter decomposition. We crossed these data with a large dataset of 44 variables characterizing the biotic and abiotic microenvironment of each sampling point and found that microbe-driven carbon (C) and nitrogen (N) losses from leaf litter were 10.1 and 17.9% lower, respectively, in the nutrient-poorest site, but this among-site difference was equalized when meso- and macrofauna had access to the litterbags. Further, on average, soil fauna enhanced the rate of litter decomposition by 22.6%, and this contribution consistently increased as nutrient availability in the microenvironment declined. Our results indicate that nutrient scarcity increases the importance of soil fauna on C and N cycling in tropical rainforests. Further, soil fauna is able to equalize differences in microbial decomposition potential, thus buffering to a remarkable extent nutrient shortages at an ecosystem level.
Address Department of Microbiology and Ecosystem Science, University of Vienna, Vienna, 1090, Austria
Corporate Author Thesis
Publisher NLM (Medline) Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 14712954 (Issn) ISBN Medium
Area Expedition Conference
Notes (down) Approved no
Call Number EcoFoG @ webmaster @ Serial 884
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Author N'Guessan, A.E.; N'dja, J.K.; Yao, O.N.; Amani, B.H.K.; Gouli, R.G.Z.; Piponiot, C.; Zo-Bi, I.C.; Herault, B.
Title Drivers of biomass recovery in a secondary forested landscape of West Africa Type Journal Article
Year 2019 Publication Forest Ecology and Management Abbreviated Journal
Volume 433 Issue Pages 325-331
Keywords Biomass; Cultivation; Ecology; Recovery; Secondary recovery; Agricultural land; Bayesian frameworks; Diameter-at-breast heights; Forested landscapes; Neotropical forests; Old-growth forest; Physical environments; Secondary forests; Forestry; Dioscorea alata
Abstract The rapidly growing human population in West Africa has generated increasing demand for agricultural land and forest products. Consequently 90% of the original rainforest cover has now disappeared and the remainder is heavily fragmented and highly degraded. Although many studies have focused on carbon stocks and fluxes in intact African forests, little information exists on biomass recovery rates in secondary forests. We studied a chronosequence of 96 secondary and old-growth forest fragments (0.2 ha each) where 32.103 trees with Diameter at Breast Height > 2.5 cm have been censused. We modelled the biomass recovery trajectories in a time-explicit Bayesian framework and tested the effect on recovery rates of a large set of covariates related to the physical environment, plot history, and forest connectivity. Recovery rate trajectory is highly non-linear: recovery rates accelerated from 1 to 37 years, when biomass recovery reached 4.23 Mg /ha /yr, and decelerated afterwards. We predict that, on average, 10%, 25% and 50% of the old-growth forest biomass is respectively recovered 17, 30, and 51 years after abandonment. Recovery rates are strongly shaped by both the number of remnant trees (residuals of the former old-growth forest) and the previous crop cultivated before abandonment. The latter induced large differences in the time needed to recover 50% of an old-growth forest biomass: from 38 years for former Yam fields up to 86 years for former rice fields. Our results emphasize (i) the very slow recovery rates of West African forests, as compared to Neotropical forests (ii) the long-lasting impacts of past human activities and management choices on ecosystem biomass recovery in West African degraded forests.
Address
Corporate Author Thesis
Publisher Elsevier B.V. Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 03781127 (Issn) ISBN Medium
Area Expedition Conference
Notes (down) Approved no
Call Number EcoFoG @ webmaster @ Serial 838
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Author Yguel, B.; Piponiot, C.; Mirabel, A.; Dourdain, A.; Hérault, B.; Gourlet-Fleury, S.; Forget, P.-M.; Fontaine, C.
Title Beyond species richness and biomass: Impact of selective logging and silvicultural treatments on the functional composition of a neotropical forest Type Journal Article
Year 2019 Publication Forest Ecology and Management Abbreviated Journal
Volume 433 Issue Pages 528-534
Keywords Selective logging; Humid tropical forest; Functional composition; Seed dispersal; Carbon storage; Commercial stock; Anthropogenic pressure; Sustainability
Abstract Tropical forests harbor the greatest terrestrial biodiversity and provide various ecosystem services. The increase of human activities on these forests, among which logging, makes the conservation of biodiversity and associated services strongly dependent on the sustainability of these activities. However the indicators commonly used to assess the impact of forest exploitation, namely species richness and biomass, provide a limited understanding of their sustainability. Here, we assessed the sustainability of common forest exploitation in the Guiana Shield studying the recovery of two ecosystem services i.e. carbon storage and wood stock, and an ecosystem function i.e. seed dispersal by animals. Specifically, we compared total and commercial biomass, as well as functional composition in seed size of animal-dispersed species in replicated forest plots before and 27 years after exploitation. Species richness is also studied to allow comparison. While species richness was not affected by forest exploitation, total and commercial biomass as well as seed size of animal-dispersed species decreased 27 years after exploitation, similarly to forests affected by hunting. These results show that ecosystem services and function likely did not recover even at the lowest intensity of forest exploitation studied, questioning the sustainability of the most common rotation-cycle duration applied in the tropics.
Address
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 0378-1127 ISBN Medium
Area Expedition Conference
Notes (down) Approved no
Call Number EcoFoG @ webmaster @ Serial 839
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Author Céréghino, R.; Corbara, B.; Hénaut, Y.; Bonhomme, C.; Compin, A.; Dejean, A.
Title Ant and spider species as surrogates for functional community composition of epiphyte-associated invertebrates in a tropical moist forest Type Journal Article
Year 2019 Publication Ecological Indicators Abbreviated Journal
Volume 96 Issue Pages 694-700
Keywords Functional traits; Indicator species; Phytotelmata; Rainforests; Surrogacy; Tank bromeliads
Abstract Epiphytes represent up to 50% of all plant species in rainforests, where they host a substantial amount of invertebrate biomass. Efficient surrogates for epiphyte invertebrate communities could reduce the cost of biomonitoring surveys while preventing destructive sampling of the plants. Here, we focus on the invertebrate communities associated to tank bromeliads. We ask whether the presence of particular ant and/or spider taxa (easily surveyed taxa) that use these plants as nesting and/or foraging habitats predicts functional trait combinations of aquatic invertebrate communities hosted by the plants. Functional community composition of invertebrates was predicted both by bromeliad habitat features and the presence of certain ant and spider species. The ant Azteca serica preferred wider bromeliad rosettes that trap large amount of detritus, indicating interstitial-like food webs dominated by deposit feeders that burrow in fine particulate organic matter. Leucauge sp. spiders preferred narrower bromeliad rosettes bearing smaller detrital loads, thereby indicating a dominance of pelagic filter-feeding and predatory invertebrates in the water-filled leaf axils. Both Neoponera villosa ants and Eriophora sp. spiders preferred rosettes at intermediate size bearing moderate amounts of detritus, indicating a benthic food web dominated by leaf shredders and gathering collectors. Owing to the animal diversity and biomass supported by rainforest epiphytes, our approach would deserve to be further tested on a range of epiphytes involved in tight interactions with invertebrates. In this context, surrogate species could serve both as indicators of functional diversity, and as early-warning indicators of network disassembly.
Address
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 1470-160x ISBN Medium
Area Expedition Conference
Notes (down) Approved no
Call Number EcoFoG @ webmaster @ Serial 841
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Author Caron, H.; Molino, J.-F.; Sabatier, D.; Léger, P.; Chaumeil, P.; Scotti-Saintagne, C.; Frigério, J.-M.; Scotti, I.; Franc, A.; Petit, R.J.
Title Chloroplast DNA variation in a hyperdiverse tropical tree community Type Journal Article
Year 2019 Publication Ecology and Evolution Abbreviated Journal Ecology and Evolution
Volume 9 Issue 8 Pages 4897-4905
Keywords chloroplast DNA; DNA barcoding; genetic diversity; hybridization; incomplete lineage sorting; introgression; species diversity; tropical trees
Abstract We investigate chloroplast DNA variation in a hyperdiverse community of tropical rainforest trees in French Guiana, focusing on patterns of intraspecific and interspecific variation. We test whether a species genetic diversity is higher when it has congeners in the community with which it can exchange genes and if shared haplotypes are more frequent in genetically diverse species, as expected in the presence of introgression. We sampled a total of 1,681 individual trees from 472 species corresponding to 198 genera and sequenced them at a noncoding chloroplast DNA fragment. Polymorphism was more frequent in species that have congeneric species in the study site than in those without congeners (30% vs. 12%). Moreover, more chloroplast haplotypes were shared with congeners in polymorphic species than in monomorphic ones (44% vs. 28%). Despite large heterogeneities caused by genus-specific behaviors in patterns of hybridization, these results suggest that the higher polymorphism in the presence of congeners is caused by local introgression rather than by incomplete lineage sorting. Our findings suggest that introgression has the potential to drive intraspecific genetic diversity in species-rich tropical forests.
Address INRA, UR629 Ecologie des Forêts Méditerranéennes, URFM, Avignon, France
Corporate Author Thesis
Publisher John Wiley and Sons Ltd Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 20457758 (Issn) ISBN Medium
Area Expedition Conference
Notes (down) Approved no
Call Number EcoFoG @ webmaster @ Serial 870
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Author Zinger, L.; Taberlet, P.; Schimann, H.; Bonin, A.; Boyer, F.; De Barba, M.; Gaucher, P.; Gielly, L.; Giguet-Covex, C.; Iribar, A.; Réjou-Méchain, M.; Rayé, G.; Rioux, D.; Schilling, V.; Tymen, B.; Viers, J.; Zouiten, C.; Thuiller, W.; Coissac, E.; Chave, J.
Title Body size determines soil community assembly in a tropical forest Type Journal Article
Year 2019 Publication Molecular Ecology Abbreviated Journal Mol Ecol
Volume 28 Issue 3 Pages 528-543
Keywords DNA metabarcoding; eDNA; French Guiana; multitaxa; neutral assembly; niche determinism; propagule size; soil diversity
Abstract Tropical forests shelter an unparalleled biological diversity. The relative influence of environmental selection (i.e., abiotic conditions, biotic interactions) and stochastic?distance-dependent neutral processes (i.e., demography, dispersal) in shaping communities has been extensively studied for various organisms, but has rarely been explored across a large range of body sizes, in particular in soil environments. We built a detailed census of the whole soil biota in a 12-ha tropical forest plot using soil DNA metabarcoding. We show that the distribution of 19 taxonomic groups (ranging from microbes to mesofauna) is primarily stochastic, suggesting that neutral processes are prominent drivers of the assembly of these communities at this scale. We also identify aluminium, topography and plant species identity as weak, yet significant drivers of soil richness and community composition of bacteria, protists and to a lesser extent fungi. Finally, we show that body size, which determines the scale at which an organism perceives its environment, predicted the community assembly across taxonomic groups, with soil mesofauna assemblages being more stochastic than microbial ones. These results suggest that the relative contribution of neutral processes and environmental selection to community assembly directly depends on body size. Body size is hence an important determinant of community assembly rules at the scale of the ecological community in tropical soils and should be accounted for in spatial models of tropical soil food webs.
Address
Corporate Author Thesis
Publisher John Wiley & Sons, Ltd (10.1111) Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 0962-1083 ISBN Medium
Area Expedition Conference
Notes (down) Approved no
Call Number EcoFoG @ webmaster @ Serial 873
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Author Hofman, M.P.; Hayward, M.W.; Heim, M.; Marchand, P.; Rolandsen, C.M.; Mattisson, J.; Urbano, F.; Heurich, M.; Mysterud, A.; Melzheimer, J.; Morellet, N.; Voigt, U.; Allen, B.L.; Gehr, B.; Rouco, C.; Ullmann, W.; Holand, Ø.; Jørgensen, N.H.; Steinheim, G.; Cagnacci, F.; Kroeschel, M.; Kaczensky, P.; Buuveibaatar, B.; Payne, J.C.; Palmegiani, I.; Jerina, K.; Kjellander, P.; Johansson, Ö.; LaPoint, S.; Bayrakcismith, R.; Linnell, J.D.C.; Zaccaroni, M.; Jorge, M.L.S.; Oshima, J.E.F.; Songhurst, A.; Fischer, C.; Mc Bride, R.T., Jr.; Thompson, J.J.; Streif, S.; Sandfort, R.; Bonenfant, C.; Drouilly, M.; Klapproth, M.; Zinner, D.; Yarnell, R.; Stronza, A.; Wilmott, L.; Meisingset, E.; Thaker, M.; Vanak, A.T.; Nicoloso, S.; Graeber, R.; Said, S.; Boudreau, M.R.; Devlin, A.; Hoogesteijn, R.; May-Junior, J.A.; Nifong, J.C.; Odden, J.; Quigley, H.B.; Tortato, F.; Parker, D.M.; Caso, A.; Perrine, J.; Tellaeche, C.; Zieba, F.; Zwijacz-Kozica, T.; Appel, C.L.; Axsom, I.; Bean, W.T.; Cristescu, B.; Périquet, S.; Teichman, K.J.; Karpanty, S.; Licoppe, A.; Menges, V.; Black, K.; Scheppers, T.L.; Schai-Braun, S.C.; Azevedo, F.C.; Lemos, F.G.; Payne, A.; Swanepoel, L.H.; Weckworth, B.V.; Berger, A.; Bertassoni, A.; McCulloch, G.; Sustr, P.; Athreya, V.; Bockmuhl, D.; Casaer, J.; Ekori, A.; Melovski, D.; Richard-Hansen, C.; Van De Vyver, D.; Reyna-Hurtado, R.; Robardet, E.; Selva, N.; Sergiel, A.; Farhadinia, M.S.; Sunde, P.; Portas, R.; Ambarli, H.; Berzins, R.; Kappeler, P.M.; Mann, G.K.; Pyritz, L.; Bissett, C.; Grant, T.; Steinmetz, R.; Swedell, L.; Welch, R.J.; Armenteras, D.; Bidder, O.R.; González, T.M.; Rosenblatt, A.; Kachel, S.; Balkenhol, N.
Title Right on track? Performance of satellite telemetry in terrestrial wildlife research Type Journal Article
Year 2019 Publication PLoS One Abbreviated Journal
Volume 14 Issue 5 Pages e0216223
Keywords article; nonhuman; telemetry; terrestrial species; wildlife
Abstract Satellite telemetry is an increasingly utilized technology in wildlife research, and current devices can track individual animal movements at unprecedented spatial and temporal resolutions. However, as we enter the golden age of satellite telemetry, we need an in-depth understanding of the main technological, species-specific and environmental factors that determine the success and failure of satellite tracking devices across species and habitats. Here, we assess the relative influence of such factors on the ability of satellite telemetry units to provide the expected amount and quality of data by analyzing data from over 3,000 devices deployed on 62 terrestrial species in 167 projects worldwide. We evaluate the success rate in obtaining GPS fixes as well as in transferring these fixes to the user and we evaluate failure rates. Average fix success and data transfer rates were high and were generally better predicted by species and unit characteristics, while environmental characteristics influenced the variability of performance. However, 48% of the unit deployments ended prematurely, half of them due to technical failure. Nonetheless, this study shows that the performance of satellite telemetry applications has shown improvements over time, and based on our findings, we provide further recommendations for both users and manufacturers.
Address South African National Parks, Scientific Services, Kimberley, South Africa
Corporate Author Thesis
Publisher Public Library of Science Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 19326203 (Issn) ISBN Medium
Area Expedition Conference
Notes (down) Approved no
Call Number EcoFoG @ webmaster @ Serial 874
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Author Van Langenhove, L.; Depaepe, T.; Vicca, S.; van den Berge, J.; Stahl, C.; Courtois, E.; Weedon, J.; Urbina, I.; Grau, O.; Asensio, D.; Peñuelas, J.; Boeckx, P.; Richter, A.; Van Der Straeten, D.; Janssens, I.A.
Title Regulation of nitrogen fixation from free-living organisms in soil and leaf litter of two tropical forests of the Guiana shield Type Journal Article
Year 2019 Publication Plant and Soil Abbreviated Journal Plant Soil
Volume Issue Pages
Keywords Free-living nitrogen fixation; French Guiana; Molybdenum; Nutrients; Phosphorus; Tropical forest
Abstract Background and aims: Biological fixation of atmospheric nitrogen (N 2 ) is the main pathway for introducing N into unmanaged ecosystems. While recent estimates suggest that free-living N fixation (FLNF) accounts for the majority of N fixed in mature tropical forests, the controls governing this process are not completely understood. The aim of this study was to quantify FLNF rates and determine its drivers in two tropical pristine forests of French Guiana. Methods: We used the acetylene reduction assay to measure FLNF rates at two sites, in two seasons and along three topographical positions, and used regression analyses to identify which edaphic explanatory variables, including carbon (C), nitrogen (N), phosphorus (P) and molybdenum (Mo) content, pH, water and available N and P, explained most of the variation in FLNF rates. Results: Overall, FLNF rates were lower than measured in tropical systems elsewhere. In soils seasonal variability was small and FLNF rates differed among topographies at only one site. Water, P and pH explained 24% of the variation. In leaf litter, FLNF rates differed seasonally, without site or topographical differences. Water, C, N and P explained 46% of the observed variation. We found no regulatory role of Mo at our sites. Conclusions: Rates of FLNF were low in primary rainforest on poor soils on the Guiana shield. Water was the most important rate-regulating factor and FLNF increased with increasing P, but decreased with increasing N. Our results support the general assumption that N fixation in tropical lowland forests is limited by P availability. © 2019, The Author(s).
Address Department of Microbiology and Ecosystem Science, University of Vienna, Althanstr. 14, Vienna, 1090, Austria
Corporate Author Thesis
Publisher Springer International Publishing Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 0032079x (Issn) ISBN Medium
Area Expedition Conference
Notes (down) Approved no
Call Number EcoFoG @ webmaster @ Serial 868
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