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Fortunel, C.; Paine, C.E.T.; Fine, P.V.A.; Mesones, I.; Goret, J.; Burban, B.; Cazal, J.; Baraloto, C.; Comita, L. |
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There's no place like home: seedling mortality contributes to the habitat specialisation of tree species across Amazonia |
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Journal Article |
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2016 |
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Ecology Letters |
Abbreviated Journal |
Ecology Letters |
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19 |
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10 |
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1256-1266 |
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Amazon basin; forests habitats; habitat association; herbivory; light availability; plant lineages; rainfall temporal variation; seedling performance; soil fertility; tropical trees |
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Understanding the mechanisms generating species distributions remains a challenge, especially in hyperdiverse tropical forests. We evaluated the role of rainfall variation, soil gradients and herbivory on seedling mortality, and how variation in seedling performance along these gradients contributes to habitat specialisation. In a 4-year experiment, replicated at the two extremes of the Amazon basin, we reciprocally transplanted 4638 tree seedlings of 41 habitat-specialist species from seven phylogenetic lineages among the three most important forest habitats of lowland Amazonia. Rainfall variation, flooding and soil gradients strongly influenced seedling mortality, whereas herbivory had negligible impact. Seedling mortality varied strongly among habitats, consistent with predictions for habitat specialists in most lineages. This suggests that seedling performance is a primary determinant of the habitat associations of adult trees across Amazonia. It further suggests that tree diversity, currently mostly harboured in terra firme forests, may be strongly impacted by the predicted climate changes in Amazonia. © 2016 John Wiley & Sons Ltd/CNRS |
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Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA, United States |
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Export Date: 27 October 2016 |
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EcoFoG @ webmaster @ |
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698 |
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Honorio Coronado, E.N.; Dexter, K.G.; Pennington, R.T.; Chave, J.; Lewis, S.L.; Alexiades, M.N.; Alvarez, E.; Alves de Oliveira, A.; Amaral, I.L.; Araujo-Murakami, A.; Arets, E.J.M.M.; Aymard, G.A.; Baraloto, C.; Bonal, D.; Brienen, R.; Cerón, C.; Cornejo Valverde, F.; Di Fiore, A.; Farfan-Rios, W.; Feldpausch, T.R.; Higuchi, N.; Huamantupa-Chuquimaco, I.; Laurance, S.G.; Laurance, W.F.; López-Gonzalez, G.; Marimon, B.S.; Marimon-Junior, B.H.; Monteagudo Mendoza, A.; Neill, D.; Palacios Cuenca, W.; Peñuela Mora, M.C.; Pitman, N.C.A.; Prieto, A.; Quesada, C.A.; Ramirez Angulo, H.; Rudas, A.; Ruschel, A.R.; Salinas Revilla, N.; Salomão, R.P.; Segalin de Andrade, A.; Silman, M.R.; Spironello, W.; ter Steege, H.; Terborgh, J.; Toledo, M.; Valenzuela Gamarra, L.; Vieira, I.C.G.; Vilanova Torre, E.; Vos, V.; Phillips, O.L. |
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Title |
Phylogenetic diversity of Amazonian tree communities |
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Journal Article |
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Year |
2015 |
Publication |
Diversity and Distributions |
Abbreviated Journal |
Diversity and Distributions |
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21 |
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11 |
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1295-1307 |
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Amazon basin; Eudicots; Magnoliids; Monocots; Phylogenetic diversity; Species richness |
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Aim: To examine variation in the phylogenetic diversity (PD) of tree communities across geographical and environmental gradients in Amazonia. Location: Two hundred and eighty-three c. 1 ha forest inventory plots from across Amazonia. Methods: We evaluated PD as the total phylogenetic branch length across species in each plot (PDss), the mean pairwise phylogenetic distance between species (MPD), the mean nearest taxon distance (MNTD) and their equivalents standardized for species richness (ses.PDss, ses.MPD, ses.MNTD). We compared PD of tree communities growing (1) on substrates of varying geological age; and (2) in environments with varying ecophysiological barriers to growth and survival. Results: PDss is strongly positively correlated with species richness (SR), whereas MNTD has a negative correlation. Communities on geologically young- and intermediate-aged substrates (western and central Amazonia respectively) have the highest SR, and therefore the highest PDss and the lowest MNTD. We find that the youngest and oldest substrates (the latter on the Brazilian and Guiana Shields) have the highest ses.PDss and ses.MNTD. MPD and ses.MPD are strongly correlated with how evenly taxa are distributed among the three principal angiosperm clades and are both highest in western Amazonia. Meanwhile, seasonally dry tropical forest (SDTF) and forests on white sands have low PD, as evaluated by any metric. Main conclusions: High ses.PDss and ses.MNTD reflect greater lineage diversity in communities. We suggest that high ses.PDss and ses.MNTD in western Amazonia results from its favourable, easy-to-colonize environment, whereas high values in the Brazilian and Guianan Shields may be due to accumulation of lineages over a longer period of time. White-sand forests and SDTF are dominated by close relatives from fewer lineages, perhaps reflecting ecophysiological barriers that are difficult to surmount evolutionarily. Because MPD and ses.MPD do not reflect lineage diversity per se, we suggest that PDss, ses.PDss and ses.MNTD may be the most useful diversity metrics for setting large-scale conservation priorities. © 2015 John Wiley & Sons Ltd. |
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Universidad Autónoma del Beni, Av. Ejército Nacional, Riberalta, Riberalta, Bolivia |
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Export Date: 22 October 2015 |
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EcoFoG @ webmaster @ |
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634 |
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Orivel, J.; Klimes, P.; Novotny, V.; Leponce, M. |
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Resource use and food preferences in understory ant communities along a complete elevational gradient in Papua New Guinea |
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Journal Article |
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2018 |
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Biotropica |
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Biotropica |
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50 |
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4 |
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641-648 |
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altitudinal gradient; food resources; Formicidae; Mt Wilhelm; nutritional ecology |
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Elevational gradients provide an interesting opportunity for studying the effect of climatic drivers over short distances on the various facets of biodiversity. It is globally assumed that the decrease in species richness with increasing elevation follows mainly the decrease in ecosystem productivity, but studies on functional diversity still remain limited. Here, we investigated how resource use and food preferences by both individual ant species and communities foraging in the understory vary with elevation along a complete elevational gradient (200 to 3200 m asl). Five bait types reflecting some of the main ecosystem processes in which ants are involved were tested: mutualism (sucrose and melezitose), predation (live termites), and detritivory (crushed insects and chicken feces). The observed monotonic decrease in both species richness and occurrences with elevation increase was accompanied by changes in some of the tested ecosystem processes. Such variations can be explained by resource availability and/or resource limitation: Predation and bird feces removal decreased with increasing elevation possibly reflecting a decline in species able to use these resources, while insect detritivory and nectarivory were most probably driven by resource limitation (or absence of limitation), as their relative use did not change along the gradient. Consequently, resource attractiveness (i.e., food preferences at the species level) appears as an important factor in driving community structuring in ants together with the abiotic environmental conditions. |
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John Wiley & Sons, Ltd (10.1111) |
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0006-3606 |
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doi: 10.1111/btp.12539 |
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EcoFoG @ webmaster @ |
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893 |
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Pavoine, S.; Marcon, E.; Ricotta, C. |
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‘Equivalent numbers’ for species, phylogenetic or functional diversity in a nested hierarchy of multiple scales |
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Journal Article |
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Year |
2016 |
Publication |
Methods in Ecology and Evolution |
Abbreviated Journal |
Methods in Ecology and Evolution |
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7 |
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10 |
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1152-1163 |
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alpha diversity; beta diversity; biodiversity; community ecology; community phylogenetics; diversity apportionment; gamma diversity; quadratic entropy |
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Many recent studies have searched to integrate species’ functions and phylogenies in the measurement of biodiversity. To obtain easily interpretable measures, some researchers recommended diversity indices expressed in terms of equivalent numbers of species: the number of equally likely and maximally dissimilar species needed to produce the given value of diversity. Then, biodiversity is often calculated at three scales: within communities (α diversity), among communities (β diversity) and in a region (γ diversity). These three scales are, however, insufficient to tackle the organization of biodiversity in space because, for most organisms, there is a nested hierarchy of multiple scales characterized by different patterns and processes, from the small neighbourhood to the biosphere. We developed methodologies for analysing species, functional, taxonomic or phylogenetic diversity in a hierarchy of multiple scales using equivalent numbers of species. As an example, we analysed the taxonomic and functional diversity of macroinvertebrate assemblages in the Loire River, France, at four levels: within sites (α diversity), among sites within geological regions (β1 diversity), among geological regions (β2 diversity) and at the river scale (γ diversity). The new hierarchical approaches of biodiversity revealed very low differences among sites within regions and among regions in terms of taxonomy and functional traits (size and diet), despite moderate, significant species turnover among geological regions. We compare our framework with those other authors have developed. We argue that different definitions of α, β, γ diversities are used in the literature reflecting different points of view on biodiversity. We make recommendations on how to normalize functional (or phylogenetic) dissimilarities among species to render sites and regions comparable, and discuss the pros and cons of our approach. The hierarchical approaches of biodiversity in terms of ‘equivalent numbers’ respond to current demands to obtain intuitive, easily interpretable components of biodiversity. The approaches we propose go beyond current developments by considering a hierarchy of spatial scales and unbalanced sampling design. They will provide powerful tools to detect the ecological and evolutionary processes that act differently at different scales. © 2016 The Authors. Methods in Ecology and Evolution © 2016 British Ecological Society |
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Department of Environmental Biology, University of Rome ‘La Sapienza’, Piazzale Aldo Moro 5, Rome, Italy |
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Export Date: 20 October 2016 |
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EcoFoG @ webmaster @ |
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697 |
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Sharma, K.; Degen, B.; Von Wuehlisch, G.; Singh, N.B. |
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Allozyme variation in eight natural populations of Pinus roxburghii Sarg. in India |
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Journal Article |
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2002 |
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Silvae Genetica |
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Silvae Genet. |
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51 |
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5-6 |
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246-253 |
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Allozymes; Differentiation; Genetic distance; Multilocus diversity; Pinus roxburghii; Variation; Enzymes; Forestry; Genes; Allozyme variations; Genetic engineering; Enzymes; Genes; Genetic Engineering; Pinus Roxburghii; Embryophyta; Pinus roxburghii |
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Seeds collected from eight populations of Chir pine (Pinus roxburghii SARG.) from the natural distribution range of the species in Himachal Himalayas in India were analysed isozymatically at 11 enzyme systems. For the enzyme systems studied, 25 gene loci were identified out of which 18 were polymorphic. The observed mean values for genetic variation were slightly lower than mean values reported for Pinus species (number of alleles: 1.65 compared to 2.36; effective number of alleles: 1.13 compared to 1.26; observed heterozygosity: 0.153 compared to 0.179). A small differentiation among populations and large variation within populations were reflected by small value of GST (0.04): Considering the different genetic parameters three populations seem favourable for gene conservation measures. |
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Silviculture Division, Forest Research Institute, Dehra Dun – 248 006, India |
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00375349 (Issn) |
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Cited By (since 1996): 4; Export Date: 22 October 2011; Source: Scopus; Coden: Sigea; Language of Original Document: English; Correspondence Address: Sharma, K.; Dr. Y. S. Parmar Univ. Hort./Forest., Reg. Horticultural Research Station, Jachh (Nurpur)-176 201 (HP), India |
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360 |
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Binelli, G.; Montaigne, W.; Sabatier, D.; Scotti-Saintagne, C.; Scotti, I. |
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Discrepancies between genetic and ecological divergence patterns suggest a complex biogeographic history in a Neotropical genus |
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2020 |
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Ecology and Evolution |
Abbreviated Journal |
Ecology and Evolution |
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10 |
Issue |
11 |
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4726-4738 |
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allopatric divergence; Amazon; Guiana Shield; interspecific gene flow; Myristicaceae; secondary contact; Virola |
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Phylogenetic patterns and the underlying speciation processes can be deduced from morphological, functional, and ecological patterns of species similarity and divergence. In some cases, though, species retain multiple similarities and remain almost indistinguishable; in other cases, evolutionary convergence can make such patterns misleading; very often in such cases, the “true” picture only emerges from carefully built molecular phylogenies, which may come with major surprises. In addition, closely related species may experience gene flow after divergence, thus potentially blurring species delimitation. By means of advanced inferential methods, we studied molecular divergence between species of the Virola genus (Myristicaceae): widespread Virola michelii and recently described, endemic V. kwatae, using widespread V. surinamensis as a more distantly related outgroup with different ecology and morphology—although with overlapping range. Contrary to expectations, we found that the latter, and not V. michelii, was sister to V. kwatae. Therefore, V. kwatae probably diverged from V. surinamensis through a recent morphological and ecological shift, which brought it close to distantly related V. michelii. Through the modeling of the divergence process, we inferred that gene flow between V. surinamensis and V. kwatae stopped soon after their divergence and resumed later, in a classical secondary contact event which did not erase their ecological and morphological differences. While we cannot exclude that initial divergence occurred in allopatry, current species distribution and the absence of geographical barriers make complete isolation during speciation unlikely. We tentatively conclude that (a) it is possible that divergence occurred in allopatry/parapatry and (b) secondary contact did not suppress divergence. © 2020 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. |
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INRAE, URFM, Avignon, France |
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John Wiley and Sons Ltd |
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20457758 (Issn) |
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EcoFoG @ webmaster @ |
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963 |
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Fortunel, C.; Violle, C.; Rourmet, C.; Buatois, B.; Navas, M.L.; Garnier, E. |
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Allocation strategies and seed traits are hardly affected by nitrogen supply in 18 species differing in successional status |
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2009 |
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Perspectives in Plant Ecology Evolution and Systematics |
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Perspect. Plant Ecol. Evol. Syst. |
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11 |
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4 |
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267-283 |
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Allometry; Reproductive output; Seed mass; Nitrogen concentration of organs; Succession; Nitrogen supply |
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Species performance depends on ecological strategies, revealed by suites of traits, conferring different relative ecological advantages in different environments. Although current knowledge on plant strategies along successional gradients is derived from studies conducted in situ, actually quantifying these strategies requires disentangling the effects of environmental factors from intrinsic differences between species. Here we tested whether allocation strategies and seed traits differ among successional stages and nitrogen levels. To this aim, we assessed biomass and nitrogen allocations and seed traits variations for 18 species, differing in life history and belonging to three stages of a Mediterranean old-field succession. These species were grown as monocultures in an experimental garden under limiting and non-limiting nitrogen supply. Early successional species allocated allometrically more nitrogen and proportionally more biomass to reproduction, and set more seeds than later successional species. Seed mass increased with successional status and was negatively related to seed number. Early successional species thus produced more but less-provisioned seeds, suggesting better colonization abilities. These patterns were not the sole consequence of the replacement of annuals by perennials along the successional gradient, since comparable trends were also observed within each life history. Allocation patterns were generally not altered by nitrogen supply and the higher nitrogen content in vegetative organs of plants grown under high nitrogen supply was not retranslocated from leaves to seeds during seed development. We therefore conclude that differences in plant ecological strategies in species characteristics from contrasting successional stages appear to be intrinsic properties of the studied species, and independent from environmental conditions. (c) 2009 Rubel Foundation, ETH Zurich. Published by Elsevier GmbH. All rights reserved. |
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[Fortunel, Claire; Violle, Cyrille; Rourmet, Catherine; Buatois, Bruno; Garnier, Eric] Ctr Ecol Fonct & Evolut, CNRS, UMR 5175, F-34293 Montpellier 5, France, Email: claire.fortunel@ecofog.gf |
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ELSEVIER GMBH, URBAN & FISCHER VERLAG |
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1433-8319 |
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ISI:000271799900003 |
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EcoFoG @ eric.marcon @ |
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93 |
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Levionnois, S.; Coste, S.; Nicolini, E.; Stahl, C.; Morel, H.; Heuret, P. |
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Scaling of petiole anatomies, mechanics and vasculatures with leaf size in the widespread Neotropical pioneer tree species Cecropia obtusa Trécul (Urticaceae) |
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Journal Article |
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2020 |
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Tree physiology |
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Tree Physiol. |
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40 |
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2 |
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245-258 |
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allometry; leaf size; petiole anatomy; scaling; theoretical hydraulic conductivity; vessel widening; xylem |
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Although the leaf economic spectrum has deepened our understanding of leaf trait variability, little is known about how leaf traits scale with leaf area. This uncertainty has resulted in the assumption that leaf traits should vary by keeping the same pace of variation with increases in leaf area across the leaf size range. We evaluated the scaling of morphological, tissue-surface and vascular traits with overall leaf area, and the functional significance of such scaling. We examined 1,271 leaves for morphological traits, and 124 leaves for anatomical and hydraulic traits, from 38 trees of Cecropia obtusa Trécul (Urticaceae) in French Guiana. Cecropia is a Neotropical genus of pioneer trees that can exhibit large laminas (0.4 m2 for C. obtusa), with leaf size ranging by two orders of magnitude. We measured (i) tissue fractions within petioles and their second moment of area, (ii) theoretical xylem hydraulic efficiency of petioles and (iii) the extent of leaf vessel widening within the hydraulic path. We found that different scaling of morphological trait variability allows for optimisation of lamina display among larger leaves, especially the positive allometric relationship between lamina area and petiole cross-sectional area. Increasing the fraction of pith is a key factor that increases the geometrical effect of supportive tissues on mechanical rigidity and thereby increases carbon-use efficiency. We found that increasing xylem hydraulic efficiency with vessel size results in lower leaf lamina area: xylem ratios, which also results in potential carbon savings for large leaves. We found that the vessel widening is consistent with hydraulic optimisation models. Leaf size variability modifies scaling of leaf traits in this large-leaved species. © The Author(s) 2020. Published by Oxford University Press. All rights reserved. For permissions, please email: journals.permission@oup.com. |
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UMR AMAP, CIRAD, CNRS, IRD, Université de Montpellier, Montpellier, 34398, France |
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NLM (Medline) |
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Export Date: 16 March 2020 |
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EcoFoG @ webmaster @ |
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921 |
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Falster, D.S.; Duursma, R.A.; Ishihara, M.I.; Barneche, D.R.; FitzJohn, R.G.; Vårhammar, A.; Aiba, M.; Ando, M.; Anten, N.; Aspinwall, M.J.; Baltzer, J.L.; Baraloto, C.; Battaglia, M.; Battles, J.J.; Lamberty, B.B.; Van Breugel, M.; Camac, J.; Claveau, Y.; Coll, L.; Dannoura, M.; Delagrange, S.; Domec, J.C.; Fatemi, F.; Feng, W.; Gargaglione, V.; Goto, Y.; Hagihara, A.; Hall, J.S.; Hamilton, S.; Harja, D.; Hiura, T.; Holdaway, R.; Hutley, L.B.; Ichie, T.; Jokela, E.J.; Kantola, A.; Kelly, J.W.G.; Kenzo, T.; King, D.; Kloeppel, B.D.; Kohyama, T.; Komiyama, A.; Laclau, J.P.; Lusk, C.H.; Maguire, D.A.; Le Maire, G.; Mäkelä, A.; Markesteijn, L.; Marshall, J.; McCulloh, K.; Miyata, I.; Mokany, K.; Mori, S.; Myster, R.W.; Nagano, M.; Naidu, S.L.; Nouvellon, Y.; O'Grady, A.P.; O'Hara, K.L.; Ohtsuka, T.; Osada, N.; Osunkoya, O.O.; Peri, P.L.; Petritan, A.M.; Poorter, L.; Portsmuth, A.; Potvin, C.; Ransijn, J.; Reid, D.; Ribeiro, S.C.; Roberts, S.D.; Rodríguez, R.; Acosta, A.S.; Santa-Regina, I.; Sasa, K.; Selaya, N.G.; Sillett, S.C.; Sterck, F.; Takagi, K.; Tange, T.; Tanouchi, H.; Tissue, D.; Umehara, T.; Utsugi, H.; Vadeboncoeur, M.A.; Valladares, F.; Vanninen, P.; Wang, J.R.; Wenk, E.; Williams, R.; De Aquino Ximenes, F.; Yamaba, A.; Yamada, T.; Yamakura, T.; Yanai, R.D.; York, R.A. |
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BAAD: a Biomass And Allometry Database for woody plants |
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Journal Article |
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Year |
2015 |
Publication |
Ecology |
Abbreviated Journal |
Ecology |
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Volume |
96 |
Issue |
5 |
Pages |
1445 |
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Keywords |
Allometric equations; Biomass allocation; Biomass partitioning; Global carbon cycle; Plant allometry; Plant traits |
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Abstract |
Understanding how plants are constructed; i.e., how key size dimensions and the amount of mass invested in different tissues varies among individuals; is essential for modeling plant growth, estimating carbon stocks, and mapping energy fluxes in the terrestrial biosphere. Allocation patterns can differ through ontogeny, but also among coexisting species and among species adapted to different environments. While a variety of models dealing with biomass allocation exist, we lack a synthetic understanding of the underlying processes. This is partly due to the lack of suitable data sets for validating and parameterizing models. To that end, we present the Biomass and allometry database (BAAD) for woody plants. The BAAD contains 259 634 measurements collected in 176 different studies, from 21 084 individuals across 678 species. Most of these data come from existing publications. However, raw data were rarely made public at time of publication. Thus the BAAD contains individual level data from different studies, transformed into standard units and variable names. The transformations were achieved using a common workflow for all raw data files. Other features that distinguish the BAAD are: (i) measurements were for individual plants rather than stand averages; (ii) individuals spanning a range of sizes were measured; (iii) inclusion of plants from 0.01-100 m in height; and (iii) biomass was estimated directly, i.e., not indirectly via allometric equations (except in very large trees where biomass was estimated from detailed subsampling). We included both wild and artificially grown plants. The data set contains the following size metrics: total leaf area; area of stem crosssection including sapwood, heartwood, and bark; height of plant and crown base, crown area, and surface area; and the dry mass of leaf, stem, branches, sapwood, heartwood, bark, coarse roots, and fine root tissues. We also report other properties of individuals (age, leaf size, leaf mass per area, wood density, nitrogen content of leaves and wood), as well as information about the growing environment (location, light, experimental treatment, vegetation type) where available. It is our hope that making these data available will improve our ability to understand plant growth, ecosystem dynamics, and carbon cycling in the world's vegetation. |
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Department of Disturbance Ecology, University of Bayreuth, Germany |
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Export Date: 1 September 2016 |
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EcoFoG @ webmaster @ |
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686 |
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Author |
Orivel, J.; Lambs, L.; Male, P.J.G.; Leroy, C.; Grangier, J.; Otto, T.; Quilichini, A.; Dejean, A. |
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Title |
Dynamics of the association between a long-lived understory myrmecophyte and its specific associated ants |
Type |
Journal Article |
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Year |
2011 |
Publication |
Oecologia |
Abbreviated Journal |
Oecologia |
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Volume |
165 |
Issue |
2 |
Pages |
369-376 |
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Keywords |
Allomerus decemarticulatus; Hirtella physophora; Lifespan; Mutualism; Myrmecophyte |
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Myrmecophytic symbioses are widespread in tropical ecosystems and their diversity makes them useful tools for understanding the origin and evolution of mutualisms. Obligate ant-plants, or myrmecophytes, provide a nesting place, and, often, food to a limited number of plant-ant species. In exchange, plant-ants protect their host plants from herbivores, competitors and pathogens, and can provide them with nutrients. Although most studies to date have highlighted a similar global pattern of interactions in these systems, little is known about the temporal structuring and dynamics of most of these associations. In this study we focused on the association between the understory myrmecophyte Hirtella physophora (Chrysobalanaceae) and its obligate ant partner Allomerus decemarticulatus (Myrmicinae). An examination of the life histories and growth rates of both partners demonstrated that this plant species has a much longer lifespan (up to about 350 years) than its associated ant colonies (up to about 21 years). The size of the ant colonies and their reproductive success were strongly limited by the available nesting space provided by the host plants. Moreover, the resident ants positively affected the vegetative growth of their host plant, but had a negative effect on its reproduction by reducing the number of flowers and fruits by more than 50%. Altogether our results are important to understanding the evolutionary dynamics of ant-plant symbioses. The highly specialized interaction between long-lived plants and ants with a shorter lifespan produces an asymmetry in the evolutionary rates of the interaction which, in return, can affect the degree to which the interests of the two partners converge. |
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[Orivel, Jerome; Leroy, Celine; Quilichini, Angelique; Dejean, Alain] CNRS, UMR Ecol Forets Guyane, F-97379 Kourou, France, Email: jerome.orivel@ecofog.gf |
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Springer |
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0029-8549 |
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ISI:000286224900012 |
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EcoFoG @ webmaster @ |
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295 |
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