| Records |
| Author |
Aili, S.R.; Touchard, A.; Hayward, R.; Robinson, S.D.; Pineda, S.S.; Lalagüe, H.; Mrinalini; Vetter, I.; Undheim, E.A.B.; Kini, R.M.; Escoubas, P.; Padula, M.P.; Myers, G.S.A.; Nicholson, G.M. |
| Title |
An integrated proteomic and transcriptomic analysis reveals the venom complexity of the bullet ant Paraponera clavata |
Type |
Journal Article |
| Year |
2020 |
Publication |
Toxins |
Abbreviated Journal |
Toxins |
| Volume |
12 |
Issue |
5 |
Pages |
|
Keywords  |
DRG neurons; Hyaluronidase; Neurotoxins; Paraponeritoxin; Phospholipases; Rp-Hplc; alpha latrotoxin; ant venom; arginine kinase; cathepsin; contig; defensin 2; hyaluronidase; icarapin; metalloproteinase; neurotoxin; novel toxin like protein; phospholipase; phospholipase A2; poneratoxin; proteome; serine proteinase; transcriptome; unclassified drug; amino acid sequence; ant; Article; liquid chromatography-mass spectrometry; neurotoxicity; nonhuman; Paraponera clavata; protein expression; proteomics; sequence database; tandem mass spectrometry; transcriptomics; venom gland |
| Abstract |
A critical hurdle in ant venom proteomic investigations is the lack of databases to comprehensively and specifically identify the sequence and function of venom proteins and peptides. To resolve this, we used venom gland transcriptomics to generate a sequence database that was used to assign the tandem mass spectrometry (MS) fragmentation spectra of venom peptides and proteins to specific transcripts. This was performed alongside a shotgun liquid chromatography-mass spectrometry (LC-MS/MS) analysis of the venom to confirm that these assigned transcripts were expressed as proteins. Through the combined transcriptomic and proteomic investigation of Paraponera clavata venom, we identified four times the number of proteins previously identified using 2D-PAGE alone. In addition to this, by mining the transcriptomic data, we identified several novel peptide sequences for future pharmacological investigations, some of which conform with inhibitor cysteine knot motifs. These types of peptides have the potential to be developed into pharmaceutical or bioinsecticide peptides. © 2020 by the authors. Licensee MDPI, Basel, Switzerland. |
| Address |
Faculty of Science, University of Nice, Nice, 06000, France |
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| Publisher |
Mdpi Ag |
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Series Issue |
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Edition |
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| ISSN |
20726651 (Issn) |
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no |
| Call Number |
EcoFoG @ webmaster @ |
Serial |
972 |
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| Author |
Levionnois, S.; Ziegler, C.; Jansen, S.; Calvet, E.; Coste, S.; Stahl, C.; Salmon, C.; Delzon, S.; Guichard, C.; Heuret, P. |
| Title |
Vulnerability and hydraulic segmentations at the stem–leaf transition: coordination across Neotropical trees |
Type |
Journal Article |
| Year |
2020 |
Publication |
New Phytologist |
Abbreviated Journal |
New Phytol. |
| Volume |
228 |
Issue |
2 |
Pages |
512-524 |
| Keywords |
drought-induced embolism resistance; hydraulic segmentation; leaf-specific conductivity; stem–leaf transition; tropical trees; vulnerability segmentation; air bubble; hydraulic conductivity; leaf; Neotropical Region; rainforest; tropical forest; vulnerability; xylem |
| Abstract |
Hydraulic segmentation at the stem–leaf transition predicts higher hydraulic resistance in leaves than in stems. Vulnerability segmentation, however, predicts lower embolism resistance in leaves. Both mechanisms should theoretically favour runaway embolism in leaves to preserve expensive organs such as stems, and should be tested for any potential coordination. We investigated the theoretical leaf-specific conductivity based on an anatomical approach to quantify the degree of hydraulic segmentation across 21 tropical rainforest tree species. Xylem resistance to embolism in stems (flow-centrifugation technique) and leaves (optical visualization method) was quantified to assess vulnerability segmentation. We found a pervasive hydraulic segmentation across species, but with a strong variability in the degree of segmentation. Despite a clear continuum in the degree of vulnerability segmentation, eight species showed a positive vulnerability segmentation (leaves less resistant to embolism than stems), whereas the remaining species studied exhibited a negative or no vulnerability segmentation. The degree of vulnerability segmentation was positively related to the degree of hydraulic segmentation, such that segmented species promote both mechanisms to hydraulically decouple leaf xylem from stem xylem. To what extent hydraulic and vulnerability segmentation determine drought resistance requires further integration of the leaf–stem transition at the whole-plant level, including both xylem and outer xylem tissue. © 2020 The Authors. New Phytologist © 2020 New Phytologist Trust |
| Address |
Univ. Bordeaux, INRAE, BIOGECO, Pessac, F-33615, France |
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Thesis |
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| Publisher |
Blackwell Publishing Ltd |
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Edition |
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| ISSN |
0028646x (Issn) |
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no |
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EcoFoG @ webmaster @ |
Serial |
952 |
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| Author |
Céréghino, R.; Corbara, B.; Leroy, C.; Carrias, J.-F. |
| Title |
Ecological determinants of community structure across the trophic levels of freshwater food webs: a test using bromeliad phytotelmata |
Type |
Journal Article |
| Year |
2020 |
Publication |
Hydrobiologia |
Abbreviated Journal |
Hydrobiologia |
| Volume |
847 |
Issue |
2 |
Pages |
391-402 |
| Keywords |
Environmental filtering; Functional group; Neotropical; Niche; Trophic interactions; alga; assembly rule; bacterium; community structure; ecological modeling; environmental conditions; food web; freshwater ecosystem; functional group; Neotropic Ecozone; niche; protozoan; taxonomy; trophic interaction; trophic level; algae; Invertebrata; Protozoa |
| Abstract |
Understanding the relative importance of habitat and biotic drivers on community assembly across food web components is an important step towards predicting the consequences of environmental changes. Because documenting entire food webs is often impractical, this question has been only partially investigated. Here, we partitioned variation in species assemblages of the major components of tank bromeliad food webs (bacteria, algae, protozoans, detritivorous and predatory invertebrates) into habitat and biotic determinants and examined the influence of habitat variables and predator or prey abundance on all taxonomic assemblages. Ecological determinism of assemblage structure ranged from weak in bacteria (< 10% of the explained variance) to strong in predatory invertebrates (90%). Habitat features and canopy openness significantly influenced species assemblages; however, prey or predator density had far and away the most significant structuring effects. If biotic forces are at least as important as the abiotic forces while the importance of stochasticity declines towards upper trophic levels, then trophic levels could respond differently to natural or anthropogenic disturbance and to shifts in species distributions. The effects of such differential responses on food web reconfiguration, however, remain to be elucidated. © 2019, Springer Nature Switzerland AG. |
| Address |
UMR EcoFoG (AgroParisTech, CIRAD, CNRS, INRA, Université de Guyane, Université des Antilles), Kourou, 97310, France |
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| Publisher |
Springer |
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Series Title |
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Abbreviated Series Title |
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Series Issue |
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Edition |
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| ISSN |
00188158 (Issn) |
ISBN |
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Approved |
no |
| Call Number |
EcoFoG @ webmaster @ |
Serial |
996 |
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| Author |
Duplais, C.; Papon, N.; Courdavault, V. |
| Title |
Tracking the Origin and Evolution of Plant Metabolites |
Type |
Journal Article |
| Year |
2020 |
Publication |
Trends in Plant Science |
Abbreviated Journal |
Trends Plant Sci. |
| Volume |
25 |
Issue |
12 |
Pages |
1182-1184 |
| Keywords |
enzyme evolution; iridoids; Lamiaceae; nepetalactone; plant metabolites |
| Abstract |
Iridoids are monoterpenes that are produced by various plants as chemical defense molecules. Lichman et al. recently described the timeline of molecular events that underpin the re-emergence of iridoid biosynthesis in an independent lineage of aromatic plants (catnip). This study represents a benchmark for studying enzyme and metabolite evolution in different clades across the tree of life. © 2020 Elsevier Ltd |
| Address |
Biomolécules et Biotechnologies Végétales (BBV) EA 2106, Université de Tours, Tours, France |
| Corporate Author |
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Thesis |
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| Publisher |
Elsevier Ltd |
Place of Publication |
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Editor |
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| Language |
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Summary Language |
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Original Title |
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Series Title |
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Abbreviated Series Title |
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Series Issue |
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Edition |
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| ISSN |
13601385 (Issn) |
ISBN |
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| Notes |
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Approved |
no |
| Call Number |
EcoFoG @ webmaster @ |
Serial |
937 |
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| Author |
Van Langenhove, L.; Janssens, I.A.; Verryckt, L.; Brechet, L.; Hartley, I.P.; Stahl, C.; Courtois, E.; Urbina, I.; Grau, O.; Sardans, J.; Peguero, G.; Gargallo-Garriga, A.; Peñuelas, J.; Vicca, S. |
| Title |
Rapid root assimilation of added phosphorus in a lowland tropical rainforest of French Guiana |
Type |
Journal Article |
| Year |
2020 |
Publication |
Soil Biology and Biochemistry |
Abbreviated Journal |
Soil Biol. Biochem. |
| Volume |
140 |
Issue |
107646 |
Pages |
|
| Keywords |
Fertilization; Nitrogen; Phosphorus; Plant root simulator probes; Root system; Tropical forest; Nitrogen; Nitrogen fertilizers; Phosphorus; Plants (botany); Soils; Tropics; Fertilization; Mycorrhizal fungus; N and P fertilizer; P availabilities; Plant root simulators; Root system; Tropical forest; Tropical rain forest; Forestry; Fungi |
| Abstract |
Tree growth on weathered soils in lowland tropical forests is limited by low phosphorous (P) availability. However, nutrient manupulation experiments do not always increase the P content in these trees, which raises the question whether trees are taking up added P. In French Guianese lowland rainforest, we measured changes in nitrogen (N) and P availability before and up to two months after N and P fertilizer addition, in soils with intact root systems and in soils where roots and mycorrhizal fungi were excluded by root exclusion cylinders. When the root system was excluded, P addition increased P availability to a much greater extent and for a longer time than in soils with an intact root system. Soil N dynamics were unaffected by root presence/absence. These results indicate rapid P uptake, but not N uptake, by tree roots, suggesting a very effective P acquisition process in these lowland rainforests. |
| Address |
Global Change Research Institute, Czech Academy of Sciences, Czech Republic |
| Corporate Author |
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Thesis |
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| Publisher |
Elsevier Ltd |
Place of Publication |
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Editor |
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Summary Language |
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Original Title |
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Edition |
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| ISSN |
00380717 (Issn) |
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| Notes |
Export Date: 19 November 2019; Coden: Sbioa; Correspondence Address: Van Langenhove, L.; Centre of Excellence PLECO (Plants and Ecosystems), Department of Biology, University of Antwerp, Wilrijk, Belgium; email: leandro.vanlangenhove@uantwerpen.be |
Approved |
no |
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EcoFoG @ webmaster @ |
Serial |
897 |
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| Author |
Do, N.A.; Dias, D.; Zhang, Z.; Huang, X.; Nguyen, T.T.; Pham, V.V.; Nait-Rabah, O. |
| Title |
Study on the behavior of squared and sub-rectangular tunnels using the Hyperstatic Reaction Method |
Type |
Journal Article |
| Year |
2020 |
Publication |
Transportation Geotechnics |
Abbreviated Journal |
Transp. Geotech. |
| Volume |
22 |
Issue |
100321 |
Pages |
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| Keywords |
Finite element method; Lining; Squared shape; Sub-rectangular shape; Tunnel; efficiency measurement; finite element method; numerical model; transportation development; transportation planning; tunnel design; tunnel lining |
| Abstract |
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| Address |
Saint-Petersburg Mining University, Russian Federation |
| Corporate Author |
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Thesis |
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| Publisher |
Elsevier Ltd |
Place of Publication |
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Editor |
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| Language |
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Summary Language |
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Original Title |
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| Series Editor |
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Series Title |
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Abbreviated Series Title |
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Series Issue |
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Edition |
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| ISSN |
22143912 (Issn) |
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| Notes |
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Approved |
no |
| Call Number |
EcoFoG @ webmaster @ |
Serial |
915 |
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| Author |
Sayer, E.J.; Rodtassana, C.; Sheldrake, M.; Bréchet, L.M.; Ashford, O.S.; Lopez-Sangil, L.; Kerdraon-Byrne, D.; Castro, B.; Turner, B.L.; Wright, S.J.; Tanner, E.V.J. |
| Title |
Revisiting nutrient cycling by litterfall—Insights from 15 years of litter manipulation in old-growth lowland tropical forest |
Type |
Journal Article |
| Year |
2020 |
Publication |
Advances in Ecological Researc |
Abbreviated Journal |
Adv. Ecol. Res. |
| Volume |
62 |
Issue |
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Pages |
173-223 |
| Keywords |
Forest floor; Litter addition; Litter removal; Litterfall; Nutrient cycling; Nutrient use efficiency; Soil fertility; Trace elements; Tropical lowland forest |
| Abstract |
The crucial role of tropical forests in the global carbon balance is underpinned by their extraordinarily high biomass and productivity, even though the majority of tropical forests grow on nutrient-poor soils. Nutrient cycling by litterfall has long been considered essential for maintaining high primary productivity in lowland tropical forests but few studies have tested this assumption experimentally. We review and synthesise findings from the Gigante Litter Manipulation Project (GLiMP), a long-term experiment in lowland tropical forest in Panama, Central America, in which litter has been removed from or added to large-scale plots for 15 years. We assessed changes in soil and litter nutrient concentrations in response to the experimental treatments and estimated nutrient return and nutrient use efficiency to indicate changes in nutrient cycling. The soil concentrations of most nutrients increased with litter addition and declined with litter removal. Litter removal altered nitrogen, potassium, manganese and zinc cycling, demonstrating the importance of litter inputs for maintaining the availability of these elements to plants. By contrast, litter addition only altered nitrogen cycling and, despite low concentrations of available soil phosphorus, the effects of litter manipulation on phosphorus cycling were inconsistent. We discuss potential mechanisms underlying the observed changes, and we emphasise the importance of decomposition processes in the forest floor for retaining nutrient elements, which partially decouples nutrient cycling from the mineral soil. Finally, by synthesising GLiMP studies conducted during 15 years of litter manipulation, we highlight key knowledge gaps and avenues for future research into tropical forest nutrient cycling. © 2020 Elsevier Ltd |
| Address |
Teagasc, Johnstown Castle, Wexford, Ireland |
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Thesis |
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| Publisher |
Academic Press Inc. |
Place of Publication |
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Editor |
Dumbrell A.J.; Turner E.C.; Fayle T.M. |
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Summary Language |
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Original Title |
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Series Title |
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Abbreviated Series Title |
Advances in Ecological Research |
| Series Volume |
62 |
Series Issue |
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Edition |
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| ISSN |
00652504 (Issn); 9780128211342 (Isbn) |
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no |
| Call Number |
EcoFoG @ webmaster @ |
Serial |
1001 |
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| Author |
Van Langenhove, L.; Depaepe, T.; Vicca, S.; van den Berge, J.; Stahl, C.; Courtois, E.; Weedon, J.; Urbina, I.; Grau, O.; Asensio, D.; Peñuelas, J.; Boeckx, P.; Richter, A.; Van Der Straeten, D.; Janssens, I.A. |
| Title |
Regulation of nitrogen fixation from free-living organisms in soil and leaf litter of two tropical forests of the Guiana shield |
Type |
Journal Article |
| Year |
2020 |
Publication |
Plant and Soil |
Abbreviated Journal |
Plant Soil |
| Volume |
450 |
Issue |
1-2 |
Pages |
93-110 |
| Keywords |
Free-living nitrogen fixation; French Guiana; Molybdenum; Nutrients; Phosphorus; Tropical forest; acetylene; leaf litter; molybdenum; nitrogen fixation; nutrient cycling; phosphorus; rainforest; reduction; soil biota; soil carbon; soil nitrogen; soil water; topographic effect; tropical forest; French Guiana |
| Abstract |
Background and aims: Biological fixation of atmospheric nitrogen (N2) is the main pathway for introducing N into unmanaged ecosystems. While recent estimates suggest that free-living N fixation (FLNF) accounts for the majority of N fixed in mature tropical forests, the controls governing this process are not completely understood. The aim of this study was to quantify FLNF rates and determine its drivers in two tropical pristine forests of French Guiana. Methods: We used the acetylene reduction assay to measure FLNF rates at two sites, in two seasons and along three topographical positions, and used regression analyses to identify which edaphic explanatory variables, including carbon (C), nitrogen (N), phosphorus (P) and molybdenum (Mo) content, pH, water and available N and P, explained most of the variation in FLNF rates. Results: Overall, FLNF rates were lower than measured in tropical systems elsewhere. In soils seasonal variability was small and FLNF rates differed among topographies at only one site. Water, P and pH explained 24% of the variation. In leaf litter, FLNF rates differed seasonally, without site or topographical differences. Water, C, N and P explained 46% of the observed variation. We found no regulatory role of Mo at our sites. Conclusions: Rates of FLNF were low in primary rainforest on poor soils on the Guiana shield. Water was the most important rate-regulating factor and FLNF increased with increasing P, but decreased with increasing N. Our results support the general assumption that N fixation in tropical lowland forests is limited by P availability. © 2019, The Author(s). |
| Address |
Department of Microbiology and Ecosystem Science, University of Vienna, Althanstr. 14, Vienna, 1090, Austria |
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Thesis |
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| Publisher |
Springer |
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Original Title |
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0032079x (Issn) |
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no |
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EcoFoG @ webmaster @ |
Serial |
971 |
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| Author |
Romero, G.Q.; Marino, N.A.C.; MacDonald, A.A.M.; Céréghino, R.; Trzcinski, M.K.; Mercado, D.A.; Leroy, C.; Corbara, B.; Farjalla, V.F.; Barberis, I.M.; Dézerald, O.; Hammill, E.; Atwood, T.B.; Piccoli, G.C.O.; Bautista, F.O.; Carrias, J.-F.; Leal, J.S.; Montero, G.; Antiqueira, P.A.P.; Freire, R.; Realpe, E.; Amundrud, S.L.; de Omena, P.M.; Campos, A.B.A.; Kratina, P.; O’Gorman, E.J.; Srivastava, D.S. |
| Title |
Extreme rainfall events alter the trophic structure in bromeliad tanks across the Neotropics |
Type |
Journal Article |
| Year |
2020 |
Publication |
Nature Communications |
Abbreviated Journal |
Nat. Commun. |
| Volume |
11 |
Issue |
3215 |
Pages |
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| Keywords |
fresh water; rain; fresh water; agricultural intensification; angiosperm; biomass; climate change; ecosystem function; extreme event; food web; freshwater ecosystem; Neotropic Ecozone; precipitation intensity; rainfall; trophic structure; Article; biomass; Central America; controlled study; detritivore; drought; flooding; food web; hydrology; microcosm; Neotropics; nonhuman; precipitation; predator; South America; trophic level; animal; biodiversity; Bromelia; climate change; ecosystem; flooding; food chain; Central America; South America; Animals; Biodiversity; Biomass; Bromelia; Climate Change; Droughts; Ecosystem; Floods; Food Chain; Fresh Water; Hydrology; South America |
| Abstract |
Changes in global and regional precipitation regimes are among the most pervasive components of climate change. Intensification of rainfall cycles, ranging from frequent downpours to severe droughts, could cause widespread, but largely unknown, alterations to trophic structure and ecosystem function. We conducted multi-site coordinated experiments to show how variation in the quantity and evenness of rainfall modulates trophic structure in 210 natural freshwater microcosms (tank bromeliads) across Central and South America (18°N to 29°S). The biomass of smaller organisms (detritivores) was higher under more stable hydrological conditions. Conversely, the biomass of predators was highest when rainfall was uneven, resulting in top-heavy biomass pyramids. These results illustrate how extremes of precipitation, resulting in localized droughts or flooding, can erode the base of freshwater food webs, with negative implications for the stability of trophic dynamics. © 2020, The Author(s). |
| Address |
Institute of Biological Sciences, Universidade Federal do Pará, Belém, PA, Brazil |
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| Publisher |
Nature Research |
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Series Issue |
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Edition |
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| ISSN |
20411723 (Issn) |
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no |
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EcoFoG @ webmaster @ |
Serial |
944 |
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| Author |
Perrot, T.; Guillaume, S.; Nadine, A.; Jacques, B.; Philippe, G.; Stéphane, D.; Rodnay, S.; Mélanie, M.-R.; Eric, G. |
| Title |
A reverse chemical ecology approach to explore wood natural durability |
Type |
Journal Article |
| Year |
2020 |
Publication |
Microbial Biotechnology |
Abbreviated Journal |
Microb. Biotechnol. |
| Volume |
13 |
Issue |
5 |
Pages |
1673-1677 |
| Keywords |
glutathione transferase; Article; biodegradation; data base; detoxification; ecology; enzyme activity; enzyme metabolism; forest; molecular dynamics; physical parameters; species identification; thermal analysis; Trametes versicolor; wood; wood durability |
| Abstract |
The natural durability of wood species, defined as their inherent resistance to wood-destroying agents, is a complex phenomenon depending on many biotic and abiotic factors. Besides the presence of recalcitrant polymers, the presence of compounds with antimicrobial properties is known to be important to explain wood durability. Based on the advancement in our understanding of fungal detoxification systems, a reverse chemical ecology approach was proposed to explore wood natural durability using fungal glutathione transferases. A set of six glutathione transferases from the white-rot Trametes versicolor were used as targets to test wood extracts from seventeen French Guiana neotropical species. Fluorescent thermal shift assays quantified interactions between fungal glutathione transferases and these extracts. From these data, a model combining this approach and wood density significantly predicts the wood natural durability of the species tested previously using long-term soil bed tests. Overall, our findings confirm that detoxification systems could be used to explore the chemical environment encountered by wood-decaying fungi and also wood natural durability. © 2020 The Authors. Microbial Biotechnology published by John Wiley & Sons Ltd and Society for Applied Microbiology. |
| Address |
Université de Lorraine, INRAE, LERMAB, Nancy, France |
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Thesis |
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| Publisher |
John Wiley and Sons Ltd |
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Summary Language |
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Series Issue |
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Edition |
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| ISSN |
17517907 (Issn) |
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no |
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EcoFoG @ webmaster @ |
Serial |
955 |
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