| Records |
| Author |
Marcon, E.; Herault, B. |
| Title |
Decomposing phylodiversity |
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Journal Article |
| Year |
2015 |
Publication |
Methods in Ecology and Evolution |
Abbreviated Journal |
Methods in Ecology and Evolution |
| Volume |
6 |
Issue |
3 |
Pages |
333-339 |
Keywords  |
Biodiversity; Entropy; Functional diversity; Phylogenetic diversity |
| Abstract |
Measuring functional or phylogenetic diversity is the object of an active literature. The main issues to address are relating measures to a clear conceptual framework, allowing unavoidable estimation-bias correction and decomposing diversity along spatial scales. We provide a general mathematical framework to decompose measures of species-neutral, phylogenetic or functional diversity into α and β components. We first unify the definitions of phylogenetic and functional entropy and diversity as a generalization of HCDT entropy and Hill numbers when an ultrametric tree is considered. We then derive the decomposition of diversity. We propose a bias correction of the estimates allowing meaningful computation from real, often undersampled communities. Entropy can be transformed into true diversity, that is an effective number of species or communities. Estimators of α- and β-entropy, phylogenetic and functional entropy are provided. Proper definition and estimation of diversity is the first step towards better understanding its underlying ecological and evolutionary mechanisms. © 2015 British Ecological Society. |
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Cirad, UMR EcoFoG, BP 709Kourou, French Guiana |
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Export Date: 31 March 2015 |
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EcoFoG @ webmaster @ |
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590 |
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| Author |
Herault, B. |
| Title |
Reconciling niche and neutrality through the Emergent Group approach |
Type |
Journal Article |
| Year |
2007 |
Publication |
Perspectives in Plant Ecology Evolution and Systematics |
Abbreviated Journal |
Perspect. Plant Ecol. Evol. Syst. |
| Volume |
9 |
Issue |
2 |
Pages |
71-78 |
| Keywords |
Biodiversity; ecological equivalency; biological traits; neutral theory; niche differentiation; redundancy |
| Abstract |
Both niche and neutral theories have been suggested as potential frameworks for modelling biodiversity. Niche models assume that biological traits represent evolutionary adaptations and define individuals in terms of functional trade-offs. Neutral models assume that all individuals at a single trophic level are functionally equivalent on a per capita basis with respect to their birth, death, dispersal and speciation. The opinion of many researchers is that neutral and niche processes operate simultaneously to generate diversity without knowing how the unification of both models can be achieved. Recently, several theoretical papers have reported evidence on the evolutionary emergence of niche structures shaping the emergence of groups of similar species. In this way, an Emergent Group is defined as a set of species that have a similar functional niche owing to a convergent ecological strategy. Central to the Emergent Group concept are the assumptions of functional equivalence within and of functional divergence between Emergent Groups. Within an Emergent Group, species richness is subject to a zero-sum rule set by the balance between the rate of individual loss and of immigration. Between Emergent Groups, tradeoffs such as seed size/seedling competitivity, investment in reproductive system/investment in vegetative systems or competitive ability/predator invulnerability are cornerstones of the evolutionary divergence. Delineating Emergent Groups amounts to reaching a compromise between maximizing niche differentiation (i.e. maximizing differences in functional tradeoffs) between Emergent Groups and maximizing neutrality within Emergent Groups. Up to now, the Emergent Group concept has been mostly proposed by theoretical scientists but it should be tested by empirical ecologists. The way in which niche and neutral models could be combined provides a profitable opportunity for theoretical and empirical scientists to collaborate fruitfully. (c) 2007 Rubel Foundation, ETH Zurich. Published by Elsevier GmbH. All rights reserved. |
| Address |
[Herault, Bruno] Univ Antilles Guyane, UMR Ecol Forets Guyane, F-97379 Kourou, France, Email: Bruno.Herault@cirad.fr |
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ELSEVIER GMBH, URBAN & FISCHER VERLAG |
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1433-8319 |
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ISI:000251685100002 |
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EcoFoG @ eric.marcon @ |
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147 |
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Sist, P.; Rutishauser, E.; Peña-Claros, M.; Shenkin, A.; Herault, B.; Blanc, L.; Baraloto, C.; Baya, F.; Benedet, F.; da Silva, K.E.; Descroix, L.; Ferreira, J.N.; Gourlet-Fleury, S.; Guedes, M.C.; Bin Harun, I.; Jalonen, R.; Kanashiro, M.; Krisnawati, H.; Kshatriya, M.; Lincoln, P.; Mazzei, L.; Medjibé, V.; Nasi, R.; d'Oliveira, M.V.N.; de Oliveira, L.C.; Picard, N.; Pietsch, S.; Pinard, M.; Priyadi, H.; Putz, F.E.; Rodney, K.; Rossi, V.; Roopsind, A.; Ruschel, A.R.; Shari, N.H.Z.; Rodrigues de Souza, C.; Susanty, F.H.; Sotta, E.D.; Toledo, M.; Vidal, E.; West, T.A.P.; Wortel, V.; Yamada, T. |
| Title |
The Tropical managed forests Observatory: A research network addressing the future of tropical logged forests |
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Journal Article |
| Year |
2015 |
Publication |
Applied Vegetation Science |
Abbreviated Journal |
Appl. Veg. Sci. |
| Volume |
18 |
Issue |
1 |
Pages |
171-174 |
| Keywords |
Biodiversity; Carbon cycle; Climate change; Ecosystem resilience; Logging; Silviculture; Tropical forests; Tropical managed forests Observatory |
| Abstract |
While attention on logging in the tropics has been increasing, studies on the long-term effects of silviculture on forest dynamics and ecology remain scare and spatially limited. Indeed, most of our knowledge on tropical forests arises from studies carried out in undisturbed tropical forests. This bias is problematic given that logged and disturbed tropical forests are now covering a larger area than the so-called primary forests. A new network of permanent sample plots in logged forests, the Tropical managed Forests Observatory (TmFO), aims to fill this gap by providing unprecedented opportunities to examine long-term data on the resilience of logged tropical forests at regional and global scales. TmFO currently includes 24 experimental sites distributed across three tropical regions, with a total of 490 permanent plots and 921 ha of forest inventories. To improve our knowledge of the resilience of tropical logged forests, 20 research institutes are now collaborating on studies on the effects of logging on forest structure, productivity, biodiversity and carbon fluxes at large spatial and temporal scales. These studies are carried out in the Tropical managed Forests Observatory (TmFO), an international network including 24 sites and 490 permanent sample plots across South America, Africa and South East Asia. |
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Duke University's Nicholas School of the EnvironmentNorth Carolina, United States |
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Wiley-Blackwell |
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14022001 (Issn) |
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Export Date: 12 December 2014; Coden: Avscf; Correspondence Address: Sist, P.; Cirad, UR 105 TA/10CFrance |
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EcoFoG @ webmaster @ |
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571 |
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Denis, T.; Hérault, B.; Brunaux, O.; Guitet, S.; Richard-Hansen, C. |
| Title |
Weak environmental controls on the composition and diversity of medium and large-sized vertebrate assemblages in neotropical rain forests of the Guiana Shield |
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Journal Article |
| Year |
2018 |
Publication |
Diversity and Distributions |
Abbreviated Journal |
Diversity Distrib. |
| Volume |
24 |
Issue |
11 |
Pages |
1545-1559 |
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biodiversity; birds; functional traits; mammals; refugia hypothesis; spatial patterns; Aves; Mammalia; Vertebrata |
| Abstract |
Aim: Despite their often high-trophic position and their contribution to many ecosystem functions, little is known about the factors affecting assemblage structure of medium- and large-sized neotropical vertebrates. We examined the relative roles played by the physical and biological environment, and by purely spatial processes, in shaping the composition and diversities of these vertebrate assemblages. Then, based on the theory that the Guianan forest cover shrank to isolated pockets during the late Pleistocene–Holocene, we tested if the past forest refugia may have shaped current vertebrate assemblages. Location: French Guiana, Guiana Shield, South America. Methods: Abundances of 19 medium- and large-sized vertebrates were estimated at 21 locations in undisturbed Guianan rain forests. Using taxonomic, functional and phylogenetic metrics, we partitioned the effects of a range of physical and biological environmental conditions and purely spatial predictors in shaping both assemblage composition and (alpha and beta) diversities. Results: We identified a significant, but weak relationship between taxonomic, functional and phylogenetic assemblage composition and environmental conditions. Assemblage diversity patterns were mainly explained by spatial predictors irrespective of the metrics. Current assemblage diversities are correlated with Pleistocene–Holocene forest history, with the highest alpha diversities outside of putative forest refugia, and the highest beta diversities inside these areas. Main conclusions: Current vertebrate assemblage composition is not strongly marked by common environmental factors. Our main conclusion is that assemblage composition results from individual species responses to the environment. Our findings also suggest that dispersal-related processes or more probably historical processes shape (alpha and beta) diversity patterns. In fact, forest fragmentation during Pleistocene–Holocene climate changes could have led to isolated vertebrate assemblages evolving into unique species assemblages creating the current high beta diversity inside refugia, whereas the lower habitat stability outside of refugia could have led to mixed assemblages in areas recolonized by forest vertebrates (current high alpha diversity outside of refugia). |
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IRD, UMR AMAP (Cirad, CNRS, INRA, Université de Montpellier), Montpellier, France |
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Blackwell Publishing Ltd |
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13669516 (Issn) |
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EcoFoG @ webmaster @ |
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833 |
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Salas-Lopez, A. |
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Predicting resource use in ant species and entire communities by studying their morphological traits: Influence of habitat and subfamily |
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Journal Article |
| Year |
2017 |
Publication |
Ecological Indicators |
Abbreviated Journal |
Ecol. Indic. |
| Volume |
78 |
Issue |
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Pages |
183-191 |
| Keywords |
Biodiversity-ecosystem functioning relationships; Ecosystem process; Food niche; Formicidae; Habitat filtering; Indicator; Land-use; Morphological traits; Taxonomic conservatism; Biodiversity; Ecology; Indicators (instruments); Land use; Natural resources management; Ecosystem functioning; Ecosystem process; Formicidae; Morphological traits; Taxonomic conservatism; Ecosystems; Formicidae |
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I investigated whether the morphological traits of Neotropical ants can be used to infer food resource use by individual species and by entire communities, and whether these relationships are related to habitat type and/or by morphological differences between ant subfamilies. I attracted ants using food baits that represented different ecological processes (e.g. predation, granivory, detritivory, nectarivory) in five habitat types along a land-use gradient (from forests to gardens). I assessed ant activity at the baits and characterized 64 species from six subfamilies according to their food use and community-level resource exploitation intensity in the different habitats. Next, I performed a Mantel test to reveal the relationships between 13 morphological measures and resource use at the species level. I then used ant clades (i.e. subfamily) and habitat to rank the ants along three axes of variation in relation to their morphology and food resource use. Finally, I tested whether associations existed between the community-level exploitation intensity for such resources and the distribution of morphological trait values using the “4th-corner” analysis. Morphological traits were closely linked to the species’ ability to exploit different resources. These relationships were affected by subfamily and, to a lesser extent, by habitat type. The characterization of trait sets for entire communities was not useful, however, in predicting the intensity of the exploitation of different types of resources in varying environmental conditions. I conclude that morphological traits are accurate predictors of the ecology of species, but they should be used with caution when trying to understand community-level patterns. © 2017 Elsevier Ltd |
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Export Date: 8 April 2017 |
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EcoFoG @ webmaster @ |
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747 |
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Jona Lasinio, G.; Pollice, A.; Marcon, E.; Fano, E.A. |
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Assessing the role of the spatial scale in the analysis of lagoon biodiversity. A case-study on the macrobenthic fauna of the Po River Delta |
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Journal Article |
| Year |
2017 |
Publication |
Ecological Indicators |
Abbreviated Journal |
Ecological Indicators |
| Volume |
80 |
Issue |
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Pages |
303-315 |
| Keywords |
Biodiversity partitioning; Lagoon biodiversity; Macrobenthic fauna; Mixed effects models; Tsallis entropy |
| Abstract |
The analysis of benthic assemblages is a valuable tool to describe the ecological status of transitional water ecosystems, but species are extremely sensitive and respond to both microhabitat and seasonal differences. The identification of changes in the composition of the macrobenthic community in specific microhabitats can then be used as an “early warning” for environmental changes which may affect the economic and ecological importance of lagoons, through their provision of Ecosystem Services. From a conservational point of view, the appropriate definition of the spatial aggregation level of microhabitats or local communities is of crucial importance. The main objective of this work is to assess the role of the spatial scale in the analysis of lagoon biodiversity. First, we analyze the variation in the sample coverage for alternative aggregations of the monitoring stations in three lagoons of the Po River Delta. Then, we analyze the variation of a class of entropy indices by mixed effects models, properly accounting for the fixed effects of biotic and abiotic factors and random effects ruled by nested sources of variability corresponding to alternative definitions of local communities. Finally, we address biodiversity partitioning by a generalized diversity measure, namely the Tsallis entropy, and for alternative definitions of the local communities. The main results obtained by the proposed statistical protocol are presented, discussed and framed in the ecological context. © 2017 Elsevier Ltd |
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Dipartimento di Scienze della Vita e Biotecnologie, Università degli Studi di Ferrara, Ferrara, Italy |
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Export Date: 12 June 2017 |
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EcoFoG @ webmaster @ |
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755 |
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Buckland, S.T.; Yuan, Y.; Marcon, E. |
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Measuring temporal trends in biodiversity |
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Journal Article |
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2017 |
Publication |
AStA Advances in Statistical Analysis |
Abbreviated Journal |
AStA Advances in Statistical Analysis |
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101 |
Issue |
4 |
Pages |
461-474 |
| Keywords |
Biodiversity measures; Diversity profiles; Geometric mean; Species similarity; Turnover measures |
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In 2002, nearly 200 nations signed up to the 2010 target of the Convention for Biological Diversity, ‘to significantly reduce the rate of biodiversity loss by 2010’. To assess whether the target was met, it became necessary to quantify temporal trends in measures of diversity. This resulted in a marked shift in focus for biodiversity measurement. We explore the developments in measuring biodiversity that was prompted by the 2010 target. We consider measures based on species proportions, and also explain why a geometric mean of relative abundance estimates was preferred to such measures for assessing progress towards the target. We look at the use of diversity profiles, and consider how species similarity can be incorporated into diversity measures. We also discuss measures of turnover that can be used to quantify shifts in community composition arising, for example, from climate change. © 2017, The Author(s). |
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UMR EcoFoG, AgroParisTech, Campus Agronomique, BP 316, Kourou, French Guiana, France |
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Cited By :1; Export Date: 2 November 2017 |
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EcoFoG @ webmaster @ |
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769 |
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Verheyen, K.; Vanhellemont, M.; Auge, H.; Baeten, L.; Baraloto, C.; Barsoum, N.; Bilodeau-Gauthier, S.; Bruelheide, H.; Castagneyrol, B.; Godbold, D.; Haase, J.; Hector, A.; Jactel, H.; Koricheva, J.; Loreau, M.; Mereu, S.; Messier, C.; Muys, B.; Nolet, P.; Paquette, A.; Parker, J.; Perring, M.; Ponette, Q.; Potvin, C.; Reich, P.; Smith, A.; Weih, M.; Scherer-Lorenzen, M. |
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Contributions of a global network of tree diversity experiments to sustainable forest plantations |
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Journal Article |
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2016 |
Publication |
Ambio |
Abbreviated Journal |
Ambio |
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45 |
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1 |
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29-41 |
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Biodiversity experiments; Ecological restoration; Functional biodiversity research; Plantation forest; Sustainable forest management |
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The area of forest plantations is increasing worldwide helping to meet timber demand and protect natural forests. However, with global change, monospecific plantations are increasingly vulnerable to abiotic and biotic disturbances. As an adaption measure we need to move to plantations that are more diverse in genotypes, species, and structure, with a design underpinned by science. TreeDivNet, a global network of tree diversity experiments, responds to this need by assessing the advantages and disadvantages of mixed species plantations. The network currently consists of 18 experiments, distributed over 36 sites and five ecoregions. With plantations 1–15 years old, TreeDivNet can already provide relevant data for forest policy and management. In this paper, we highlight some early results on the carbon sequestration and pest resistance potential of more diverse plantations. Finally, suggestions are made for new, innovative experiments in understudied regions to complement the existing network. © 2015, Royal Swedish Academy of Sciences. |
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Department of Crop Production Ecology, Swedish University of Agricultural Sciences, PO Box 7043, Uppsala, Sweden |
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Export Date: 29 January 2016 |
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EcoFoG @ webmaster @ |
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652 |
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Baraloto, C.; Molto, Q.; Rabaud, S.; Herault, B.; Valencia, R.; Blanc, L.; Fine, P.V.A.; Thompson, J. |
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Rapid simultaneous estimation of aboveground biomass and tree diversity across neotropical forests: A comparison of field inventory methods |
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Journal Article |
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2013 |
Publication |
Biotropica |
Abbreviated Journal |
Biotropica |
| Volume |
45 |
Issue |
3 |
Pages |
288-298 |
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Biodiversity assessment; carbon stocks; Monitoring; Permanent plot; Survey; Tropical rain forest |
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A standardized rapid inventory method providing information on both tree species diversity and aboveground carbon stocks in tropical forests will be an important tool for evaluating efforts to conserve biodiversity and to estimate the carbon emissions that result from deforestation and degradation (REDD). Herein, we contrast five common plot methods differing in shape, size, and effort requirements to estimate tree diversity and aboveground tree biomass (AGB). We simulated the methods across six Neotropical forest sites that represent a broad gradient in forest structure, tree species richness, and floristic composition, and we assessed the relative performance of methods by evaluating the bias and precision of their estimates of AGB and tree diversity. For a given sample of forest area, a 'several small' (< 1 ha) sampling strategy led to a smaller coefficient of variation (CV) in the estimate of AGB than a 'few large' one. The effort (person-days) required to achieve an accurate AGB estimate (< 10% CV), however, was greater for the smallest plots (0.1 ha) than for a compromise approach using 0.5 ha modified Gentry plots, which proved to be the most efficient method to estimate AGB across all forest types. Gentry plots were also the most efficient at providing accurate estimates of tree diversity (< 10% CV of Hill number). We recommend the use of the 0.5 ha modified Gentry plot method in future rapid inventories, and we discuss a set of criteria that should inform any choice of inventory method. © 2012 The Author(s) Journal compilation © 2012 by The Association for Tropical Biology and Conservation. |
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Centre for Ecology and Hydrology, Bush Estate, Penicuik, Midlothian, EH26 0QB, United Kingdom |
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00063606 (Issn) |
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Export Date: 16 May 2013; Source: Scopus; Coden: Btroa; :doi 10.1111/btp.12006; Language of Original Document: English; Correspondence Address: Baraloto, C.; INRA, UMR 'Ecologie des Forêts de Guyane', 97387, Kourou Cedex, French Guiana; email: chris.baraloto@ecofog.gf |
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EcoFoG @ webmaster @ |
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485 |
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Van Langenhove, Leandro ; Depaepe, Thomas ; Verryckt, Lore T. ; Fuchslueger, Lucia ; Donald, Julian ; Celine, Leroy ; Krishna Moorthy, Sruthi M. ; Gargallo-Garriga, Albert ; Farnon Ellwood, M. D.; Verbeeck, Hans ; Van Der Straeten, Dominique ; Penuelas, Josep ; Janssens, Ivan A. |
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Comparable canapy and soil free living nitrogen fixation rates in e lowland tropical forest |
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Journal Article |
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2021 |
Publication |
Science of the total environment |
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754 |
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Biodiversité ; Systématique ; phylogénie ; taxonomie ; Ecologie, Environnement ; Ecosystèmes ; Biologie végétale ; Botanique ; Biodiversité |
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Biological nitrogen fixation (BNF) is a fundamental part of nitrogen cycling in tropical forests, yet little is known about the contribution made by free-living nitrogen fixers inhabiting the often-extensive forest canopy. We used the acetylene reduction assay, calibrated with 15N2, to measure free-living BNF on forest canopy leaves, vascular epiphytes, bryophytes and canopy soil, as well as on the forest floor in leaf litter and soil. We used a combination of calculated and published component densities to upscale free-living BNF rates to the forest level. We found that bryophytes and leaves situated in the canopy in particular displayed high mass-based rates of free-living BNF. Additionally, we calculated that nearly 2 kg of nitrogen enters the forest ecosystem through free-living BNF every year, 40% of which was fixed by the various canopy components. Our results reveal that in the studied tropical lowland forest a large part of the nitrogen input through free-living BNF stems from the canopy, but also that the total nitrogen inputs by free-living BNF are lower than previously thought and comparable to the inputs of reactive nitrogen by atmospheric deposition. |
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Elsevier |
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Anglais |
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EcoFoG @ webmaster @ |
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1006 |
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