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Cohen, M.C.L.; Behling, H.; Lara, R.J.; Smith, C.B.; Matos, H.R.S.; Vedel, V. |
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Title |
Impact of sea-level and climatic changes on the Amazon coastal wetlands during the late Holocene |
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Journal Article |
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Year |
2009 |
Publication |
Vegetation History and Archaeobotany |
Abbreviated Journal |
Veg. Hist. Archaeobot. |
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18 |
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6 |
Pages |
425-439 |
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Mangrove; Marajo Island; Pollen analysis; Sea-level |
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Wetland dynamics in northern Brazil during the Holocene were studied by pollen analysis and AMS radiocarbon dating of three cores. Near the Amazon mouth region, covered mainly by primary Amazon coastal forest and herbaceous vegetation, the pollen record indicates the dominance of mangroves between 4800 and 1100 cal yr B.P. A contraction of the mangrove area and an expansion of herbaceous and fern vegetation occurred between 1100 and 750 cal yr B.P. The period between 750 and 200 cal yr B.P. is characterized by an expansion of mangrove and a decrease in herbaceous and fern vegetation. This trend continued until the present. On Atalaia Island, the sediment core indicates a period with poor pollen preservation between 830 and 630 cal yr B.P. Between 630 and 330 cal yr B.P., mangroves expanded. Later, up to 45 cal yr B.P., the mangrove area decreased and the herbaceous vegetation expanded. During the last hundred years, the relative sea-level rise most probably favored the mangrove expansion as far as the topographically highest sector on this island, while the herbaceous vegetation decreased. The pollen data from Agua Preta Lake indicate dry conditions, as reflected by the poor pollen preservation between 390 and 240 cal yr B.P. Between 240 and 60 cal yr B.P., restinga and Amazon coastal forest with palms dominated this region. For the last 120 years, the record indicates an expansion of the mangrove area. However, recent confinement of mangrove development to the topographically highest area, and the loss of mangrove areas on the lowest surfaces have led to a net loss of mangrove coverage during the last decades. |
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[Lisboa Cohen, Marcelo Cancela; Smith, Clarisse Beltrao; Soares Matos, Hellen Rosy] Fed Univ Para, Postgrad Program Geol & Geochem, Lab Coastal Dynam, BR-66077530 Belem, PA, Brazil, Email: mcohen@ufpa.br |
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SPRINGER |
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0939-6314 |
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ISI:000271191800001 |
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EcoFoG @ eric.marcon @ |
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193 |
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Clair, B.; Jaouen, G.; Beauchene, J.; Fournier, M. |
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Title |
Mapping radial, tangential and longitudinal shrinkages and relation to tension wood in discs of the tropical tree Symphonia globulifera |
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Journal Article |
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2003 |
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Holzforschung |
Abbreviated Journal |
Holzforschung |
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57 |
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6 |
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665-671 |
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drying shrinkage; tension wood; Symphonia globulifera L. f. |
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A method for measuring shrinkage resulting from drying in the three anisotropic directions is developed and tested. Measurements are performed on sawn discs, a technique which simplifies preparation and enables large numbers of measurements. Shrinkage values can be represented as a map of the disc surface. The results indicate that comparisons between shrinkage distribution and tension wood distribution on the discs show a clear relationship and can be measured with relatively high accuracy in reference to the shrinkage map. In the long term, this method could be useful in the timber industry as a means for choosing the direction in which logs are cut depending on their type of wood composition. |
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CIRAD ENGREF INRA, UMR Ecol Forets Guyane, Kourou 97379, French Guiana |
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WALTER DE GRUYTER & CO |
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0018-3830 |
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ISI:000186257800016 |
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EcoFoG @ eric.marcon @ |
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243 |
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Degen, B.; Bandou, E.; Caron, H. |
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Limited pollen dispersal and biparental inbreeding in Symphonia globulifera in French Guiana |
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Journal Article |
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2004 |
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Heredity |
Abbreviated Journal |
Heredity |
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93 |
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6 |
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585-591 |
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gene flow; microsatellites; mixed mating; spatial autocorrelation; tropical tree; twogener |
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In this paper, we report a study of the mating system and gene flow of Symphonia globulifera, a hermaphroditic, mainly bird-pollinated tree species with a large geographic distribution in the tropical Americas and Africa. Using three microsatellites, we analysed 534 seeds of 28 open pollinated families and 164 adults at the experimental site 'Paracou' in French Guiana. We observed, compared to other tropical tree species, relatively high values for the effective number of alleles. Significant spatial genetic structure was detected, with trees at distances up to 150 m more genetically similar than expected at random. We estimated parameters of the mating system and gene flow by using the mixed mating model and the TwoGener approach. The estimated multilocus outcrossing rate, t(m), was 0.920. A significant level of biparental inbreeding and a high proportion of full-sibs were estimated for the 28 seed arrays. We estimated mean pollen dispersal distances between 27 and 53 m according to the dispersal models used. Although the adult population density of S. globulifera in Paracou was relatively high, the joint estimation of pollen dispersal and density of reproductive trees gave effective density estimates of 1.6 and 1.3 trees/ha. The parameters of the mating system and gene flow are discussed in the context of spatial genetic and demographic structures, flowering phenology and pollinator composition and behaviour. |
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BFH, Inst Forest Genet & Forest Tree Breeding, D-22927 Grosshansdorf, Germany, Email: b.degen@holz.uni-hamburg.de |
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NATURE PUBLISHING GROUP |
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0018-067X |
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ISI:000225354800009 |
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EcoFoG @ eric.marcon @ |
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259 |
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Herault, B.; Bachelot, B.; Poorter, L.; Rossi, V.; Bongers, F.; Chave, J.; Paine, C.E.T.; Wagner, F.; Baraloto, C. |
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Title |
Functional traits shape ontogenetic growth trajectories of rain forest tree species |
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Journal Article |
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Year |
2011 |
Publication |
Journal of Ecology |
Abbreviated Journal |
J. Ecol. |
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99 |
Issue |
6 |
Pages |
1431-1440 |
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Keywords |
Bayesian modelling; Functional traits; Growth modelling; Leaf economics; Leaf-height-seed strategy; Plant development and life-history traits; Plant strategy; Stem economics; Tropical rain forest |
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1.Functional traits are posited to explain interspecific differences in performance, but these relationships are difficult to describe for long-lived organisms such as trees, which exhibit strong ontogenetic changes in demographic rates. Here, we use a size-dependent model of tree growth to test the extent to which of 17 functional traits related to leaf and stem economics, adult stature and seed size predict the ontogenetic trajectory of tree growth. 2.We used a Bayesian modelling framework to parameterize and contrast three size-dependent diameter growth models using 16years of census data from 5524 individuals of 50 rain forest tree species: a size-dependent model, a size-dependent model with species-specific parameters and a size-dependent model based on functional traits. 3.Most species showed clear hump-shaped ontogenetic growth trajectories and, across species, maximum growth rate varied nearly tenfold, from 0.58 to 5.51mmyear-1. Most species attained their maximum growth at 60% of their maximum size, whereas the magnitude of ontogenetic changes in growth rate varied widely among species. 4.The Trait-Model provided the best compromise between explained variance and model parsimony and needed considerably fewer parameters than the model with species terms. 5.Stem economics and adult stature largely explained interspecific differences in growth strategy. Maximum absolute diameter growth rates increased with increasing adult stature and leaf δ13C and decreased with increasing wood density. Species with light wood had the greatest potential to modulate their growth, resulting in hump-shaped ontogenetic growth curves. Seed size and leaf economics, generally thought to be of paramount importance for plant performance, had no significant relationships with the growth parameters. 6.Synthesis. Our modelling approach offers a promising way to link demographic parameters to their functional determinants and hence to predict growth trajectories in species-rich communities with little parameter inflation, bridging the gap between functional ecology and population demography. © 2011 The Authors. Journal of Ecology © 2011 British Ecological Society. |
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Department of Biology, University of Florida, Gainesville, FL 32611, United States |
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00220477 (Issn) |
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Export Date: 21 October 2011; Source: Scopus; Coden: Jecoa; doi: 10.1111/j.1365-2745.2011.01883.x; Language of Original Document: English; Correspondence Address: Hérault, B.; Université des Antilles et de la Guyane, UMR Ecologie des Forêts de Guyane, 97387 Kourou Cedex, France; email: bruno.herault@ecofog.gf |
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EcoFoG @ webmaster @ |
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342 |
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Hamon, P.; Duroy, P.-O.; Dubreuil-Tranchant, C.; Mafra D'Almeida Costa, P.; Duret, C.; Razafinarivo, N.J.; Couturon, E.; Hamon, S.; De Kochko, A.; Poncet, V.; Guyot, R. |
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Two novel Ty1-copia retrotransposons isolated from coffee trees can effectively reveal evolutionary relationships in the Coffea genus (Rubiaceae) |
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Journal Article |
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2011 |
Publication |
Molecular Genetics and Genomics |
Abbreviated Journal |
Mol. Genet. Genomics |
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285 |
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6 |
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447-460 |
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Coffea; Evolution; Genetic diversity; LTR-retrotransposons; article; coffee; controlled study; Divo; gene amplification; gene dosage; gene expression; gene insertion; gene locus; gene sequence; genetic identification; genetic polymorphism; genetic variability; molecular cloning; Nana; nonhuman; nucleotide sequence; phylogeny; plant evolution; plant gene; priority journal; Psilanthus; random amplified microsatellite; retroposon; Rubiaceae; species differentiation; tree; Ty1 copia gene; Coffea; Genes, Plant; Genome, Plant; Phylogeny; Retroelements |
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In the study, we developed new markers for phylogenetic relationships and intraspecies differentiation in Coffea. Nana and Divo, two novel Ty1-copia LTR-retrotransposon families, were isolated through C. canephora BAC clone sequencing. Nana- and Divo-based markers were used to test their: (1) ability to resolve recent phylogenetic relationships; (2) efficiency in detecting intra-species differentiation. Sequence-specific amplification polymorphism (SSAP), retrotransposon-microsatellite amplified polymorphism (REMAP) and retrotransposon-based insertion polymorphism (RBIP) approaches were applied to 182 accessions (31 Coffea species and one Psilanthus accession). Nana- and Divo-based markers revealed contrasted transpositional histories. At the BAC clone locus, RBIP results on C. canephora demonstrated that Nana insertion took place prior to C. canephora differentiation, while Divo insertion occurred after differentiation. Combined SSAP and REMAP data showed that Nana could resolve Coffea lineages, while Divo was efficient at a lower taxonomic level. The combined results indicated that the retrotransposon-based markers were useful in highlighting Coffea genetic diversity and the chronological pattern of speciation/differentiation events. Ongoing complete sequencing of the C. canephora genome will soon enable exhaustive identification of LTR-RTN families, as well as more precise in-depth analyses on contributions to genome size variation and Coffea evolution. © 2011 Springer-Verlag. |
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IRD, UMR DIADE, BP 50172, Sainte Clotilde Cedex, La Réunion 97492, France |
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16174615 (Issn) |
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Export Date: 21 October 2011; Source: Scopus; Coden: Mggoa; doi: 10.1007/s00438-011-0617-0; PubMed ID: 21505885; Language of Original Document: English; Correspondence Address: Hamon, P.; IRD, UMR DIADE, BP 64501, Montpellier Cedex 5, France; email: perla.hamon@ird.fr; Molecular Sequence Numbers: GENBANK: DV666936, HM755952, HM755953;; Chemicals/CAS: Retroelements |
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EcoFoG @ webmaster @ |
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344 |
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Staudt, K.; Serafimovich, A.; Siebicke, L.; Pyles, R.D.; Falge, E. |
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Title |
Vertical structure of evapotranspiration at a forest site (a case study) |
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Journal Article |
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Year |
2011 |
Publication |
Agricultural and Forest Meteorology |
Abbreviated Journal |
Agric. For. Meterol. |
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151 |
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6 |
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709-729 |
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Eddy-covariance; Evapotranspiration; In-canopy profiles; Model; Picea abies L.; Sap flux; coniferous forest; ecosystem modeling; eddy covariance; evapotranspiration; forest canopy; sap flow; Fichtelgebirge; Germany; Picea abies |
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The components of ecosystem evapotranspiration of a Norway spruce forest (Picea abies L.) as well as the vertical structure of canopy evapotranspiration were analyzed with a combination of measurements and models for a case study of 5 days in September 2007. Eddy-covariance and sap flux measurements were performed at several heights within the canopy at the FLUXNET site Waldstein-Weidenbrunnen (DE-Bay) in the Fichtelgebirge mountains in Germany. Within and above canopy fluxes were simulated with two stand-scale models, the 1D multilayer model ACASA that includes a third-order turbulence closure and the 3D model STANDFLUX. The soil and understory evapotranspiration captured with the eddy-covariance system in the trunk space constituted 10% of ecosystem evapotranspiration measured with the eddy-covariance system above the canopy. A comparison of transpiration measured with the sap flux technique and inferred from below and above canopy eddy-covariance systems revealed higher estimates from eddy-covariance measurements than for sap flux measurements. The relative influences of possible sources of this mismatch, such as the assumption of negligible contribution of evaporation from intercepted water, and differences between the eddy-covariance flux footprint and the area used for scaling sap flux measurements, were discussed. Ecosystem evapotranspiration as well as canopy transpiration simulated with the two models captured the dynamics of the measurements well, but slightly underestimated eddy-covariance values. Profile measurements and models also gave us the chance to assess in-canopy profiles of canopy evapotranspiration and the contributions of in-canopy layers. For daytime and a coupled or partly coupled canopy, mean simulated profiles of both models agreed well with eddy-covariance measurements, with a similar performance of the ACASA and the STANDFLUX model. Both models underestimated profiles for nighttime and decoupled conditions. During daytime, the upper half of the canopy contributed approximately 80% to canopy evapotranspiration, whereas during nighttime the contribution shifted to lower parts of the canopy. © 2010 Elsevier B.V. |
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Max Planck Institute for Chemistry, Biogeochemistry Department, Joh.-J.-Becherweg 27, 55128 Mainz, Germany |
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01681923 (Issn) |
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Cited By (since 1996): 3; Export Date: 21 October 2011; Source: Scopus; Coden: Afmee; doi: 10.1016/j.agrformet.2010.10.009; Language of Original Document: English; Correspondence Address: Staudt, K.; University of Bayreuth, Department of Micrometeorology, 95440 Bayreuth, Germany; email: katharina.staudt@uni-bayreuth.de |
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EcoFoG @ webmaster @ |
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349 |
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Fonty, E.; Molino, J.F.; Prevost, M.F.; Sabatier, D. |
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A new case of neotropical monodominant forest: Spirotropis longifolia (Leguminosae-Papilionoideae) in French Guiana |
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Journal Article |
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2011 |
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Journal of Tropical Ecology |
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J. Trop. Ecol. |
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27 |
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6 |
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641-644 |
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French Guiana; layering; monodominance; sprouting; supporting strategy; suppressive strategy; tropical rain forests |
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[Fonty, E] ONF, Direct Reg Guyane, F-97300 Cayenne, France, Email: emile.fonty@free.fr |
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Cambridge Univ Press |
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0266-4674 |
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WOS:000296208500009 |
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EcoFoG @ webmaster @ |
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371 |
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Laurans, M.; Martin, O.; Nicolini, E.; Vincent, G. |
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Functional traits and their plasticity predict tropical trees regeneration niche even among species with intermediate light requirements |
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Journal Article |
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2012 |
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Journal of Ecology |
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J. Ecol. |
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100 |
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6 |
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1440-1452 |
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Canopy disturbance; Determinants of plant community diversity and structure; Growth rate; Irradiance; Leaf life span; Leaf mass per area; Niche differentiation; Phenotypic plasticity; Shade tolerance; Tropical moist forest |
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Niche differentiation is a key issue in the current debate on community assembly mechanisms. In highly diverse moist tropical forests, tree species sensitivity to canopy openness is thought to be a major axis in niche differentiation. In the past, the syndrome of traits driving the demographic trade-off involved in the niche-based theory of coexistence has always been established among species situated at the two extremities of the shade-tolerance gradient, even though most tropical tree species have intermediate light requirements. In addition, trait plasticity has seldom been linked to tropical tree species distribution along environmental gradients. This article examines covariations between leaf traits, whole-plant traits and niche parameters among 14 tree species with intermediate light requirements in French Guiana and across a range of canopy openness. Each functional trait measured under field conditions was characterized by a median value and a degree of plasticity expressed under contrasting light regimes. Niche differentiation was characterized in terms of spatial light gradient. We first examined covariations between functional traits then explored to what degree the median value and plasticity in functional traits could predict light niche characteristics at the sapling stage and the ontogenetic change in light availability estimated by adult stature. Leaf mass per area (LMA) was positively correlated with leaf life span (LLS); species with higher LMA and higher LLS displayed lower diameter growth rates (GRs) and lower responsiveness to canopy gap at both whole-plant and population levels. This proved that the relationships previously established over a broader range of species held true within the narrow range of the light requirements covered. Height GR plasticity accounted for 49% of the variation in light niche optimum. LMA plasticity, unlike LLS plasticity, was significantly correlated with light niche breadth and adult stature. Synthesis. This study demonstrates the relevance of considering the phenotypic plasticity in functional traits in community ecology, particularly for quantifying breadth of species distribution over environmental gradients. Our findings did not support Hubbell's hypothesis of functional equivalence and suggest that even a rather subtle variation in forest canopy disturbance promotes the coexistence of tropical tree species. © 2012 The Authors. Journal of Ecology © 2012 British Ecological Society. |
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UMR AMAP, IRD, TA A-51/PS2, Bd de la Lironde, France |
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00220477 (Issn) |
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Export Date: 7 November 2012; Source: Scopus; Coden: Jecoa; doi: 10.1111/j.1365-2745.2012.02007.x; Language of Original Document: English; Correspondence Address: Laurans, M.; UMR, AMAP, CIRAD TA A-51/PS1, Bd de la Lironde, 34398 Montpellier Cedex 5, France; email: laurans@cirad.fr |
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EcoFoG @ webmaster @ |
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445 |
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Mathieu, A.; Letort, V.; Cournède, P.H.; Zhang, B.G.; Heuret, P.; De Reffye, P. |
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Title |
Oscillations in functional structural plant growth models |
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2012 |
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Mathematical Modelling of Natural Phenomena |
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7 |
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6 |
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47-66 |
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Cecropia trees; Cucumber plant; Dynamic system of plant growth; Functional-structural plant models; GreenLab |
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The dynamic model of plant growth GreenLab describes plant architecture and functional growth at the level of individual organs. Structural development is controlled by formal grammars and empirical equations compute the amount of biomass produced by the plant, and its partitioning among the growing organs, such as leaves, stems and fruits. The number of organs initiated at each time step depends on the trophic state of the plant, which is evaluated by the ratio of biomass available in plant to the demand of all the organs. The control of the plant organogenesis by this variable induces oscillations in the simulated plant behaviour. The mathematical framework of the GreenLab model allows to compute the conditions for the generation of oscillations and the value of the period according to the set of parameters. Two case-studies are presented, corresponding to emergence of oscillations associated to fructification and branching. Similar alternating patterns are commonly reported by botanists. In this article, two examples were selected: alternate patterns of fruits in cucumber plants and alternate appearances of branches in Cecropia trees. The model was calibrated from experimental data collected on these plants. It shows that a simple feedback hypothesis of trophic control on plant structure allows the emergence of cyclic patterns corresponding to the observed ones. © EDP Sciences, 2012. |
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CIRAD, UMR AMAP, Montpellier, France |
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Export Date: 27 December 2012; Source: Scopus |
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EcoFoG @ webmaster @ |
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452 |
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Scotti, I.; Montaigne, W.; Cseke, K.; Traissac, S. |
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RaBoT: A rarefaction-by-bootstrap method to compare genome-wide levels of genetic diversity |
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2013 |
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Annals of Forest Science |
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Ann. Forest Sci. |
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70 |
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6 |
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631-635 |
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Diversity comparison; Genome scan; Genome-level diversity; Population genetics; Statistical testing |
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Context: No efficient method is available to compare multi-locus estimates of diversity while taking into account inter-locus and inter-population stochastic variance. The advent of genome scan approaches makes the development of such tests absolutely necessary. Aims: We developed a method to compare genome-wide diversity estimates while taking into account – and factoring out – variation in census size and making use of inter-locus variance to assess significance of differences in diversity levels. Methods: An approach based on rarefaction with bootstrap re-sampling (RaBoT) was implemented into a test of multi-locus comparison of diversity coded in R. The properties of the test were studied by applying it to simulated populations with varying diversity levels and varying differences in diversity levels. The test was then applied to empirical data from disturbed and undisturbed populations of Virola michelii (Myristicaceae) genotyped at 693 amplified fragment length polymorphism (AFLP) markers. Results: RaBoT was found to be rather conservative, with large numbers of false negatives when the diversity in the compared populations was similar, and false positives mostly associated to comparisons of populations with extremely high levels of diversity. When applied to empirical data, RaBoT detected higher genetic diversity in a post-disturbance than in an undisturbed population and lower genetic diversity in a seedling than in the corresponding adult population, but it also revealed differences in diversity between subgroups within the disturbed and undisturbed plots. Conclusion: RaBoT is a sensitive method to compare multi-locus levels of diversity that can be applied both at the genotype level for dominant markers (e.g. AFLP) and at the allele level for biallelic codominant markers (e.g. single-nucleotide polymorphisms). © 2013 INRA and Springer-Verlag France. |
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Unité Mixte de Recherche ecologie des Forêts de Guyane (EcoFoG), AgroParisTech, Kourou, French Guiana |
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12864560 (Issn) |
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Export Date: 30 August 2013; Source: Scopus; Coden: Afosf; doi: 10.1007/s13595-013-0302-z; Language of Original Document: English; Correspondence Address: Scotti, I.; Unité Mixte de Recherche ecologie des Forêts de Guyane (EcoFoG), INRA, Institut National de la Recherche Agronomique, BP 709, 97387 Kourou cedex, French Guiana; email: ivan.Scotti@ecofog.gf |
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498 |
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