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Dejean, A.; Petitclerc, F.; Compin, A.; Azémar, F.; Corbara, B.; Delabie, J.H.C.; Leroy, C. |
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Hollow internodes permit a neotropical understory plant to shelter multiple mutualistic ant species, obtaining protection and nutrient provisioning (myrmecotrophy) |
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Journal Article |
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2017 |
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American Naturalist |
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American Naturalist |
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190 |
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5 |
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E124-E131 |
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Ant-plant relationships; Biotic protection; Mutualism; Myrmecotrophy; Stable isotopes; Tachia guianensis |
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The Neotropical understory plant Tachia guianensis (Gentianaceae)- known to shelter the colonies of several ant species in its hollow trunks and branches-does not provide them with food rewards (e.g., extrafloral nectar). We tested whether these ants are opportunistic nesters or whether mutualistic relationships exist as for myrmecophytes or plants sheltering ant colonies in specialized hollow structures in exchange for protection from enemies and/or nutrient provisioning (myrmecotrophy). We noted 37 ant species sheltering inside T. guianensis internodes, three of them accounting for 43.5% of the cases. They protect their host plants from leaf-cutting ant defoliation and termite damage because individuals devoid of associated ants suffered significantly more attacks. Using the stable isotope 15N, we experimentally showed that the tested ant species furnish their host plants with nutrients. Therefore, a mutualism exists. However, because it is associated with numerous ant species, T. guianensis can be considered a nonspecialized myrmecophyte. © 2017 by The University of Chicago. |
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Institut de Recherche pour le Développement, UMR botAnique et Modélisation de l’Archtecture des Plantes et des Végétations, Cirad, CNRS, INRA, Université de Montpellier, Boulevard de la Lironde, TA A-51/PS2, Montpellier cedex 5, Brazil |
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Export Date: 2 November 2017 |
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EcoFoG @ webmaster @ |
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768 |
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Talaga, S.; Dezerald, O.; Carteron, A.; Leroy, C.; Carrias, J.-F.; Céréghino, R.; Dejean, A. |
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Urbanization impacts the taxonomic and functional structure of aquatic macroinvertebrate communities in a small Neotropical city |
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2017 |
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Urban Ecosystems |
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Urban Ecosystems |
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20 |
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5 |
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1001-1009 |
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Aedes aegypti; Bioindicator; Diversity; Functional traits; Tank bromeliads; Urban ecology |
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Due to habitat fragmentation, resource disruption and pollution, urbanization is one of the most destructive forms of anthropization affecting ecosystems worldwide. Generally, human-mediated perturbations dramatically alter species diversity in urban sites compared to the surroundings, thus influencing the functioning of the entire ecosystem. We investigated the taxonomic and functional diversity patterns of the aquatic macroinvertebrate communities in tank bromeliads by comparing those found in a small Neotropical city with those from an adjacent rural site. Changes in the quality of detrital inputs in relation to lower tree diversity and the presence of synanthropic species are likely important driving forces behind the observed structural changes in the urban site. Leaf-litter processors (i.e., shredders, scrapers) were positively affected in the urban site, while filter-feeders that process smaller particles produced by the activity of the shredders were negatively affected. Because we cannot ascertain whether the decline in filter-feeders is related to food web-mediated effects or to competitive exclusion (Aedes aegypti mosquitoes were present in urban bromeliads only), further studies are necessary to account for the effects of intra-guild competition or inter-guild facilitation. © 2017, Springer Science+Business Media New York. |
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Ecolab, Université de Toulouse, CNRS, INPT, UPS, Toulouse, France |
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Cited By :1; Export Date: 18 December 2017 |
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Lehnebach, R.; Beyer, R.; Letort, V.; Heuret, P. |
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The pipe model theory half a century on: a review |
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2018 |
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Annals of Botany |
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121 |
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5 |
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773-795 |
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BackgroundMore than a half century ago, Shinozaki et al. (Shinozaki K, Yoda K, Hozumi K, Kira T. 1964a. A quantitative analysis of plant form – the pipe model theory. I. Basic analyses. Japanese Journal of Ecology B: 97–105) proposed an elegant conceptual framework, the pipe model theory (PMT), to interpret the observed linear relationship between the amount of stem tissue and corresponding supported leaves. The PMT brought a satisfactory answer to two vividly debated problems that were unresolved at the moment of its publication: (1) What determines tree form and which rules drive biomass allocation to the foliar versus stem compartments in plants? (2) How can foliar area or mass in an individual plant, in a stand or at even larger scales be estimated? Since its initial formulation, the PMT has been reinterpreted and used in applications, and has undoubtedly become an important milestone in the mathematical interpretation of plant form and functioning.ScopeThis article aims to review the PMT by going back to its initial formulation, stating its explicit and implicit properties and discussing them in the light of current biological knowledge and experimental evidence in order to identify the validity and range of applicability of the theory. We also discuss the use of the theory in tree biomechanics and hydraulics as well as in functional–structural plant modelling.ConclusionsScrutinizing the PMT in the light of modern biological knowledge revealed that most of its properties are not valid as a general rule. The hydraulic framework derived from the PMT has attracted much more attention than its mechanical counterpart and implies that only the conductive portion of a stem cross-section should be proportional to the supported foliage amount rather than the whole of it. The facts that this conductive portion is experimentally difficult to measure and varies with environmental conditions and tree ontogeny might cause the commonly reported non-linear relationships between foliage and stem metrics. Nevertheless, the PMT can still be considered as a portfolio of properties providing a unified framework to integrate and analyse functional–structural relationships. |
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10.1093/aob/mcx194 |
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EcoFoG @ webmaster @ |
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801 |
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Chaves, C.L.; Degen, B.; Pakull, B.; Mader, M.; Honorio, E.; Ruas, P.; Tysklind, N.; Sebbenn, A.M. |
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Assessing the Ability of Chloroplast and Nuclear DNA Gene Markers to Verify the Geographic Origin of Jatoba (Hymenaea courbaril L.) Timber |
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2018 |
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Journal of Heredity |
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109 |
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5 |
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543-552 |
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forensics; illegal logging; nSSRs; SNPs; timber tracking; tropical trees |
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Deforestation-reinforced by illegal logging-is a serious problem in many tropical regions and causes pervasive environmental and economic damage. Existing laws that intend to reduce illegal logging need efficient, fraud resistant control methods. We developed a genetic reference database for Jatoba (Hymenaea courbaril), an important, high value timber species from the Neotropics. The data set can be used for controls on declarations of wood origin. Samples from 308 Hymenaea trees from 12 locations in Brazil, Bolivia, Peru, and French Guiana have been collected and genotyped on 10 nuclear microsatellites (nSSRs), 13 chloroplast SNPs (cpSNP), and 1 chloroplast indel marker. The chloroplast gene markers have been developed using Illumina DNA sequencing. Bayesian cluster analysis divided the individuals based on the nSSRs into 8 genetic groups. Using self-assignment tests, the power of the genetic reference database to judge on declarations on the location has been tested for 3 different assignment methods. We observed a strong genetic differentiation among locations leading to high and reliable self-assignment rates for the locations between 50% to 100% (average of 88%). Although all 3 assignment methods came up with similar mean self-assignment rates, there were differences for some locations linked to the level of genetic diversity, differentiation, and heterozygosity. Our results show that the nuclear and chloroplast gene markers are effective to be used for a genetic certification system and can provide national and international authorities with a robust tool to confirm legality of timber. © 2018 The American Genetic Association. All rights reserved. |
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Instituto Florestal de São Paulo, São Paulo, SP, Brazil |
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Export Date: 1 September 2018 |
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EcoFoG @ webmaster @ |
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817 |
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Franklin, J.; Andrade, R.; Daniels, M.L.; Fairbairn, P.; Fandino, M.C.; Gillespie, T.W.; González, G.; Gonzalez, O.; Imbert, D.; Kapos, V.; Kelly, D.L.; Marcano-Vega, H.; Meléndez-Ackerman, E.J.; McLaren, K.P.; McDonald, M.A.; Ripplinger, J.; Rojas-Sandoval, J.; Ross, M.S.; Ruiz, J.; Steadman, D.W.; Tanner, E.V.J.; Terrill, I.; Vennetier, M. |
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Geographical ecology of dry forest tree communities in the West Indies |
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2018 |
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Journal of Biogeography |
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J Biogeogr |
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45 |
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5 |
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1168-1181 |
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beta diversity; Caribbean; community composition; seasonally dry tropical forest; species turnover; tropical dry forest; West Indies |
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Abstract Aim Seasonally dry tropical forest (SDTF) of the Caribbean Islands (primarily West Indies) is floristically distinct from Neotropical SDTF in Central and South America. We evaluate whether tree species composition was associated with climatic gradients or geographical distance. Turnover (dissimilarity) in species composition of different islands or among more distant sites would suggest communities structured by speciation and dispersal limitations. A nested pattern would be consistent with a steep resource gradient. Correlation of species composition with climatic variation would suggest communities structured by broad-scale environmental filtering. Location The West Indies (The Bahamas, Cuba, Hispaniola, Jamaica, Puerto Rico, US Virgin Islands, Guadeloupe, Martinique, St. Lucia), Providencia (Colombia), south Florida (USA) and Florida Keys (USA). Taxon Seed plants?woody taxa (primarily trees). Methods We compiled 572 plots from 23 surveys conducted between 1969 and 2016. Hierarchical clustering of species in plots, and indicator species analysis for the resulting groups of sites, identified geographical patterns of turnover in species composition. Nonparametric analysis of variance, applied to principal components of bioclimatic variables, determined the degree of covariation in climate with location. Nestedness versus turnover in species composition was evaluated using beta diversity partitioning. Generalized dissimilarity modelling partitioned the effect of climate versus geographical distance on species composition. Results Despite a set of commonly occurring species, SDTF tree community composition was distinct among islands and was characterized by spatial turnover on climatic gradients that covaried with geographical gradients. Greater Antillean islands were characterized by endemic indicator species. Northern subtropical areas supported distinct, rather than nested, SDTF communities in spite of low levels of endemism. Main conclusions The SDTF species composition was correlated with climatic variation. SDTF on large Greater Antillean islands (Hispaniola, Jamaica and Cuba) was characterized by endemic species, consistent with their geological history and the biogeography of plant lineages. These results suggest that both environmental filtering and speciation shape Caribbean SDTF tree communities. |
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John Wiley & Sons, Ltd (10.1111) |
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doi: 10.1111/jbi.13198 |
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846 |
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Hofman, M.P.; Hayward, M.W.; Heim, M.; Marchand, P.; Rolandsen, C.M.; Mattisson, J.; Urbano, F.; Heurich, M.; Mysterud, A.; Melzheimer, J.; Morellet, N.; Voigt, U.; Allen, B.L.; Gehr, B.; Rouco, C.; Ullmann, W.; Holand, Ø.; Jørgensen, N.H.; Steinheim, G.; Cagnacci, F.; Kroeschel, M.; Kaczensky, P.; Buuveibaatar, B.; Payne, J.C.; Palmegiani, I.; Jerina, K.; Kjellander, P.; Johansson, Ö.; LaPoint, S.; Bayrakcismith, R.; Linnell, J.D.C.; Zaccaroni, M.; Jorge, M.L.S.; Oshima, J.E.F.; Songhurst, A.; Fischer, C.; Mc Bride, R.T., Jr.; Thompson, J.J.; Streif, S.; Sandfort, R.; Bonenfant, C.; Drouilly, M.; Klapproth, M.; Zinner, D.; Yarnell, R.; Stronza, A.; Wilmott, L.; Meisingset, E.; Thaker, M.; Vanak, A.T.; Nicoloso, S.; Graeber, R.; Said, S.; Boudreau, M.R.; Devlin, A.; Hoogesteijn, R.; May-Junior, J.A.; Nifong, J.C.; Odden, J.; Quigley, H.B.; Tortato, F.; Parker, D.M.; Caso, A.; Perrine, J.; Tellaeche, C.; Zieba, F.; Zwijacz-Kozica, T.; Appel, C.L.; Axsom, I.; Bean, W.T.; Cristescu, B.; Périquet, S.; Teichman, K.J.; Karpanty, S.; Licoppe, A.; Menges, V.; Black, K.; Scheppers, T.L.; Schai-Braun, S.C.; Azevedo, F.C.; Lemos, F.G.; Payne, A.; Swanepoel, L.H.; Weckworth, B.V.; Berger, A.; Bertassoni, A.; McCulloch, G.; Sustr, P.; Athreya, V.; Bockmuhl, D.; Casaer, J.; Ekori, A.; Melovski, D.; Richard-Hansen, C.; Van De Vyver, D.; Reyna-Hurtado, R.; Robardet, E.; Selva, N.; Sergiel, A.; Farhadinia, M.S.; Sunde, P.; Portas, R.; Ambarli, H.; Berzins, R.; Kappeler, P.M.; Mann, G.K.; Pyritz, L.; Bissett, C.; Grant, T.; Steinmetz, R.; Swedell, L.; Welch, R.J.; Armenteras, D.; Bidder, O.R.; González, T.M.; Rosenblatt, A.; Kachel, S.; Balkenhol, N. |
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Right on track? Performance of satellite telemetry in terrestrial wildlife research |
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2019 |
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PLoS One |
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14 |
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e0216223 |
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article; nonhuman; telemetry; terrestrial species; wildlife |
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Satellite telemetry is an increasingly utilized technology in wildlife research, and current devices can track individual animal movements at unprecedented spatial and temporal resolutions. However, as we enter the golden age of satellite telemetry, we need an in-depth understanding of the main technological, species-specific and environmental factors that determine the success and failure of satellite tracking devices across species and habitats. Here, we assess the relative influence of such factors on the ability of satellite telemetry units to provide the expected amount and quality of data by analyzing data from over 3,000 devices deployed on 62 terrestrial species in 167 projects worldwide. We evaluate the success rate in obtaining GPS fixes as well as in transferring these fixes to the user and we evaluate failure rates. Average fix success and data transfer rates were high and were generally better predicted by species and unit characteristics, while environmental characteristics influenced the variability of performance. However, 48% of the unit deployments ended prematurely, half of them due to technical failure. Nonetheless, this study shows that the performance of satellite telemetry applications has shown improvements over time, and based on our findings, we provide further recommendations for both users and manufacturers. |
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South African National Parks, Scientific Services, Kimberley, South Africa |
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Public Library of Science |
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19326203 (Issn) |
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874 |
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Franco, W.; Ladino, N.;Delabie, J.H.C.;Dejean, A.;Orivel, J.;Fichaux, M.; Groc, S.;Leponce, M.;Feitosa, R.M. |
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First checklist of the ants (Hymenoptera: Formicidae) of French Guiana |
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2019 |
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Zootaxa |
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4674 |
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5 |
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509-543 |
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We provide here a checklist of the ants of French Guiana, an overseas department of France situated in northern South America, with a very low human population density and predominantly covered by old-growth tropical rainforests. Based on 165 scientific papers, specimens deposited in collections, and unpublished surveys, a total of 659 valid species and subspecies from 84 genera and 12 subfamilies is presented. Although far from complete, these numbers represent approximately 10% of the ant diversity known to occur in the Neotropical realm. Additionally, three ant genera and 119 species are reported for the first time for French Guiana. Finally, five species are recognized as erroneous records for the the department in the literature. This checklist significantly expands the basic knowledge of the ants in the Guiana Shield, one of the world’s most important biodiversity hotspots. |
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Solander, K.C.; Newman, B.D.; Carioca De Araujo, A.; Barnard, H.R.; Berry, Z.C.; Bonal, D.; Bretfeld, M.; Burban, B.; Candido, L.A.; Célleri, R.; Chambers, J.Q.; Christoffersen, B.O.; Detto, M.; Dorigo, W.A.; Ewers, B.E.; Ferreira, S.J.F.; Knohl, A.; Leung, L.R.; McDowell, N.G.; Miller, G.R.; Monteiro, M.T.F.; Moore, G.W.; Negron-Juarez, R.; Saleska, S.R.; Stiegler, C.; Tomasella, J.; Xu, C. |
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The pantropical response of soil moisture to El Niño |
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2020 |
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Hydrology and Earth System Sciences |
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Hydrol. Earth Syst. Sci. |
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24 |
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5 |
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2303-2322 |
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Cluster analysis; Oceanography; Soil moisture; Surface waters; Tropics; Climate anomalies; Clustered datum; Hydrologic changes; Land data assimilation systems; Sea surface temperature anomalies; Situ soil moistures; Tropical hydrologies; Tropical Pacific ocean; Soil surveys |
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The 2015–2016 El Niño event ranks as one of the most severe on record in terms of the magnitude and extent of sea surface temperature (SST) anomalies generated in the tropical Pacific Ocean. Corresponding global impacts on the climate were expected to rival, or even surpass, those of the 1997–1998 severe El Niño event, which had SST anomalies that were similar in size. However, the 2015–2016 event failed to meet expectations for hydrologic change in many areas, including those expected to receive well above normal precipitation. To better understand how climate anomalies during an El Niño event impact soil moisture, we investigate changes in soil moisture in the humid tropics (between ±25∘) during the three most recent super El Niño events of 1982–1983, 1997–1998 and 2015–2016, using data from the Global Land Data Assimilation System (GLDAS). First, we use in situ soil moisture observations obtained from 16 sites across five continents to validate and bias-correct estimates from GLDAS (r2=0.54). Next, we apply a k-means cluster analysis to the soil moisture estimates during the El Niño mature phase, resulting in four groups of clustered data. The strongest and most consistent decreases in soil moisture occur in the Amazon basin and maritime southeastern Asia, while the most consistent increases occur over eastern Africa. In addition, we compare changes in soil moisture to both precipitation and evapotranspiration, which showed a lack of agreement in the direction of change between these variables and soil moisture most prominently in the southern Amazon basin, the Sahel and mainland southeastern Asia. Our results can be used to improve estimates of spatiotemporal differences in El Niño impacts on soil moisture in tropical hydrology and ecosystem models at multiple scales. |
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Coordination of Research and Development, National Centre for Monitoring and Early Warning of Natural Disasters, Cachoeira Paulista, Brazil |
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Copernicus GmbH |
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Export Date: 29 May 2020; Correspondence Address: Solander, K.C.; Earth and Environmental Sciences, Los Alamos National LaboratoryUnited States; email: ksolander@lanl.gov |
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934 |
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Perrot, T.; Guillaume, S.; Nadine, A.; Jacques, B.; Philippe, G.; Stéphane, D.; Rodnay, S.; Mélanie, M.-R.; Eric, G. |
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A reverse chemical ecology approach to explore wood natural durability |
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Journal Article |
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2020 |
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Microbial Biotechnology |
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Microb. Biotechnol. |
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13 |
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5 |
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1673-1677 |
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glutathione transferase; Article; biodegradation; data base; detoxification; ecology; enzyme activity; enzyme metabolism; forest; molecular dynamics; physical parameters; species identification; thermal analysis; Trametes versicolor; wood; wood durability |
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The natural durability of wood species, defined as their inherent resistance to wood-destroying agents, is a complex phenomenon depending on many biotic and abiotic factors. Besides the presence of recalcitrant polymers, the presence of compounds with antimicrobial properties is known to be important to explain wood durability. Based on the advancement in our understanding of fungal detoxification systems, a reverse chemical ecology approach was proposed to explore wood natural durability using fungal glutathione transferases. A set of six glutathione transferases from the white-rot Trametes versicolor were used as targets to test wood extracts from seventeen French Guiana neotropical species. Fluorescent thermal shift assays quantified interactions between fungal glutathione transferases and these extracts. From these data, a model combining this approach and wood density significantly predicts the wood natural durability of the species tested previously using long-term soil bed tests. Overall, our findings confirm that detoxification systems could be used to explore the chemical environment encountered by wood-decaying fungi and also wood natural durability. © 2020 The Authors. Microbial Biotechnology published by John Wiley & Sons Ltd and Society for Applied Microbiology. |
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Université de Lorraine, INRAE, LERMAB, Nancy, France |
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John Wiley and Sons Ltd |
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17517907 (Issn) |
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EcoFoG @ webmaster @ |
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955 |
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Author |
Aili, S.R.; Touchard, A.; Hayward, R.; Robinson, S.D.; Pineda, S.S.; Lalagüe, H.; Mrinalini; Vetter, I.; Undheim, E.A.B.; Kini, R.M.; Escoubas, P.; Padula, M.P.; Myers, G.S.A.; Nicholson, G.M. |
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An integrated proteomic and transcriptomic analysis reveals the venom complexity of the bullet ant Paraponera clavata |
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Journal Article |
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2020 |
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Toxins |
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Toxins |
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12 |
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5 |
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DRG neurons; Hyaluronidase; Neurotoxins; Paraponeritoxin; Phospholipases; Rp-Hplc; alpha latrotoxin; ant venom; arginine kinase; cathepsin; contig; defensin 2; hyaluronidase; icarapin; metalloproteinase; neurotoxin; novel toxin like protein; phospholipase; phospholipase A2; poneratoxin; proteome; serine proteinase; transcriptome; unclassified drug; amino acid sequence; ant; Article; liquid chromatography-mass spectrometry; neurotoxicity; nonhuman; Paraponera clavata; protein expression; proteomics; sequence database; tandem mass spectrometry; transcriptomics; venom gland |
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A critical hurdle in ant venom proteomic investigations is the lack of databases to comprehensively and specifically identify the sequence and function of venom proteins and peptides. To resolve this, we used venom gland transcriptomics to generate a sequence database that was used to assign the tandem mass spectrometry (MS) fragmentation spectra of venom peptides and proteins to specific transcripts. This was performed alongside a shotgun liquid chromatography-mass spectrometry (LC-MS/MS) analysis of the venom to confirm that these assigned transcripts were expressed as proteins. Through the combined transcriptomic and proteomic investigation of Paraponera clavata venom, we identified four times the number of proteins previously identified using 2D-PAGE alone. In addition to this, by mining the transcriptomic data, we identified several novel peptide sequences for future pharmacological investigations, some of which conform with inhibitor cysteine knot motifs. These types of peptides have the potential to be developed into pharmaceutical or bioinsecticide peptides. © 2020 by the authors. Licensee MDPI, Basel, Switzerland. |
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Faculty of Science, University of Nice, Nice, 06000, France |
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Mdpi Ag |
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20726651 (Issn) |
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EcoFoG @ webmaster @ |
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972 |
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