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Alméras, T., Ghislain, B., Clair, B., Secerovic, A., Pilate, G., & Fournier, M. (2018). Quantifying the motor power of trees. Trees, 32(3), 689–702.
Abstract: Wood maturation strains can be estimated from the change in curvature that occurs when a stem grown staked in tilted position is released from the stake.
Trees have a motor system to enable upright growth in the field of gravity. This motor function is taken on by reaction wood, a special kind of wood that typically develops in leaning axes and generates mechanical force during its formation, curving up the stem and counteracting the effect of gravity or other mechanical disturbances. Quantifying the mechanical stress induced in wood during maturation is essential to many areas of research ranging from tree architecture to functional genomics. Here, we present a new method for quantifying wood maturation stress. It consists of tilting a tree, tying it to a stake, letting it grow in tilted position, and recording the change in stem curvature that occurs when the stem is released from the stake. A mechanical model is developed to make explicit the link between the change in curvature, maturation strain and morphological traits of the stem section. A parametric study is conducted to analyse how different parameters influence the change in curvature. This method is applied to the estimation of maturation strain in two different datasets. Results show that the method is able to detect genotypic variations in motor power expression. As predicted by the model, we observe that the change in stem curvature is correlated to stem diameter and diameter growth. In contrast, wood maturation strain is independent from these dimensional effects, and is suitable as an intrinsic parameter characterising the magnitude of the plant’s gravitropic reaction.
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Hénaut, Y., Corbara, B., Azémar, F., Céréghino, R., Dézerald, O., & Dejean, A. (2018). An arboreal spider protects its offspring by diving into the water of tank bromeliads. Comptes Rendus Biologies, 341(3), 196–199.
Abstract: Cupiennius salei (Ctenidae) individuals frequently live in association with tank bromeliads, including Aechmea bracteata, in Quintana Roo (Mexico). Whereas C. salei females without egg sacs hunt over their entire host plant, females carrying egg sacs settle above the A. bracteata reservoirs they have partially sealed with silk. There they avoid predators that use sight to detect their prey, as is known for many bird species. Furthermore, if a danger is more acute, these females dive with their egg sacs into the bromeliad reservoir. An experiment showed that this is not the case for males or females without egg sacs. In addition to the likely abundance of prey found therein, the potential of diving into the tank to protect offspring may explain the close association of this spider with bromeliads. These results show that, although arboreal, C. salei evolved a protective behavior using the water of tank bromeliads to protect offspring. Résumé L’araignée Cupiennius salei (Ctenidae) vit souvent en association avec la broméliacée à réservoir Aechmea bracteata. Dans le Quintana Roo (Mexique), les femelles qui transportent un cocon s’installent au-dessus d’un réservoir d’A. bracteata qu’elles obstruent partiellement de voiles de soie pour se camoufler des prédateurs. En présence de vibrations importantes et répétées, ces femelles plongent avec leur cocon dans l’eau du réservoir. Notre étude montre que les autres adultes (mâles et femelles sans cocon) n’utilisent pas les réservoirs d’eau. Ainsi, en plus de l’abondance de proies, la possibilité de pouvoir plonger pour protéger la descendance pourrait expliquer l’association entre cette espèce d’araignée et les broméliacées. Nos expériences montrent que les femelles porteuses d’un cocon manifestent une stratégie de protection vis-à-vis des cocons et d’elles-mêmes en s’immergeant durant 30, voire 90minutes.
Keywords: Water used in protective behavior; Egg sacs; ; ; Cocons; Eau utilisée dans un comportement protecteur
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Corbara, B., Servigne, P., Dejean, A., Carpenter, J. M., & Orivel, J. (2018). A mimetic nesting association between a timid social wasp and an aggressive arboreal ant. Comptes Rendus Biologies, 341(3), 182–188.
Abstract: In French Guiana, the arboreal nests of the swarm-founding social wasp Protopolybia emortualis (Polistinae) are generally found near those of the arboreal dolichoderine ant Dolichoderus bidens. These wasp nests are typically protected by an envelope, which in turn is covered by an additional carton ‘shelter’ with structure resembling the D. bidens nests. A few wasps constantly guard their nest to keep D. bidens workers from approaching. When alarmed by a strong disturbance, the ants invade the host tree foliage whereas the wasps retreat into their nest. Notably, there is no chemical convergence in the cuticular profiles of the wasps and ants sharing a tree. The aggressiveness of D. bidens likely protects the wasps from army ant raids, but the ants do not benefit from the presence of the wasps; therefore, this relationship corresponds to a kind of commensalism. Résumé En Guyane française, les nids de la guêpe Protopolybia emortualis (Polistinae) se trouvent généralement à proximité de ceux de la fourmi arboricole Dolichoderus bidens (Dolichoderinae). Ces nids de guêpes sont typiquement protégés par une enveloppe de carton, elle-même recouverte d’une autre enveloppe formant un abri qui ressemble aux nids de carton de D. bidens. Quelques guêpes gardent leur nid en permanence afin de tenir à distance les ouvrières D. bidens. Alarmées par une forte perturbation, les fourmis envahissent tout le feuillage de leur arbre support alors que les guêpes se réfugient dans leur nid. Il n’y a pas de convergence chimique entre les profils cuticulaires des guêpes et ceux des fourmis associées. Il est très probable que les P. emortualis bénéficient d’une protection contre les fourmis légionnaires grâce à l’agressivité des D. bidens, mais il n’y a pas réciprocité, de sorte que cette relation correspond à une forme de commensalisme.
Keywords: Ant-wasp interactions; ; ; Mimicry; Nest site selection; Relations guêpes-fourmis; ; ; Mimétisme; Sélection du site de nidification
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Santiago, L. S., De Guzman, M. E., Baraloto, C., Vogenberg, J. E., Brodie, M., Hérault, B., et al. (2018). Coordination and trade-offs among hydraulic safety, efficiency and drought avoidance traits in Amazonian rainforest canopy tree species. New Phytol., 218(3), 1015–1024.
Abstract: Predicting responses of tropical forests to climate change-type drought is challenging because of high species diversity. Detailed characterization of tropical tree hydraulic physiology is necessary to evaluate community drought vulnerability and improve model parameterization. Here, we measured xylem hydraulic conductivity (hydraulic efficiency), xylem vulnerability curves (hydraulic safety), sapwood pressure–volume curves (drought avoidance) and wood density on emergent branches of 14 common species of Eastern Amazonian canopy trees in Paracou, French Guiana across species with the densest and lightest wood in the plot. Our objectives were to evaluate relationships among hydraulic traits to identify strategies and test the ability of easy-to-measure traits as proxies for hard-to-measure hydraulic traits. Xylem efficiency was related to capacitance, sapwood water content and turgor loss point, and other drought avoidance traits, but not to xylem safety (P50). Wood density was correlated (r = −0.57 to −0.97) with sapwood pressure–volume traits, forming an axis of hydraulic strategy variation. In contrast to drier sites where hydraulic safety plays a greater role, tropical trees in this humid tropical site varied along an axis with low wood density, high xylem efficiency and high capacitance at one end of the spectrum, and high wood density and low turgor loss point at the other.
Keywords: Amazonian forest; cavitation; drought; hydraulic conductivity; sapwood capacitance; turgor loss point; wood density; xylem; cavitation; climate change; drought; forest canopy; forest ecosystem; hydraulic conductivity; rainforest; species diversity; tree; tropical forest; vulnerability; wood; Amazonia; French Guiana; Paracou
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Zaremski, A., Malandain, C., Sibourg, O., Andary, C., Michaloud, G., Ducousso, M., et al. (2018). NGS Identification of Fungi Potentially Implicated in the Production of Agarwood From Aquilaria Spp. Tree. Pro Ligno, 14(3), 9–18.
Abstract: Aquilaria is a tree species belonging to the Thymeleaceae family. When Aquilaria sp. is injured, it can produce agarwood. Agarwood is characterized by a darker wood colour than the healthy one and by a strong perfume that is much esteemed by perfumers and some oriental religious communities. The production of agarwood is presumed to depend on environmental factors, among them fungi. The aim of this work is to obtain an overview of fungi present in Aquilaria sp. from different countries. Aquilaria sp. is endemic to South East Asia including notably Cambodia, Laos and Thailand, where it is cultivated to produce agarwood. In French Guiana, farmers would like to locally produce agarwood in their field. That's why we wonder if fungal communities naturally present in French Guiana present characteristics making it compatible with the induction of agarwood. In this study, NGS was used to characterize fungal communities associated with agarwood: 693,961 sequences that cover ITS2 estimated about 250bp have been obtained. These sequences have been grouped into 535 OTUs, displaying 100% identity. In this study, 87% were Ascomycetes and 10.5% were Basidiomycetes. These results show also differences in fungal communities between aboveground and belowground parts of the tree. Likewise, differences between countries within fungal communities were also observed.
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Zinger, L., Taberlet, P., Schimann, H., Bonin, A., Boyer, F., De Barba, M., et al. (2019). Body size determines soil community assembly in a tropical forest. Mol Ecol, 28(3), 528–543.
Abstract: Tropical forests shelter an unparalleled biological diversity. The relative influence of environmental selection (i.e., abiotic conditions, biotic interactions) and stochastic?distance-dependent neutral processes (i.e., demography, dispersal) in shaping communities has been extensively studied for various organisms, but has rarely been explored across a large range of body sizes, in particular in soil environments. We built a detailed census of the whole soil biota in a 12-ha tropical forest plot using soil DNA metabarcoding. We show that the distribution of 19 taxonomic groups (ranging from microbes to mesofauna) is primarily stochastic, suggesting that neutral processes are prominent drivers of the assembly of these communities at this scale. We also identify aluminium, topography and plant species identity as weak, yet significant drivers of soil richness and community composition of bacteria, protists and to a lesser extent fungi. Finally, we show that body size, which determines the scale at which an organism perceives its environment, predicted the community assembly across taxonomic groups, with soil mesofauna assemblages being more stochastic than microbial ones. These results suggest that the relative contribution of neutral processes and environmental selection to community assembly directly depends on body size. Body size is hence an important determinant of community assembly rules at the scale of the ecological community in tropical soils and should be accounted for in spatial models of tropical soil food webs.
Keywords: DNA metabarcoding; eDNA; French Guiana; multitaxa; neutral assembly; niche determinism; propagule size; soil diversity
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Courtois, E. A., Stahl, C., Burban, B., Van Den Berge, J., Berveiller, D., Bréchet, L., et al. (2019). Automatic high-frequency measurements of full soil greenhouse gas fluxes in a tropical forest. Biogeosciences, 16(3), 785–796.
Abstract: Measuring in situ soil fluxes of carbon dioxide (CO 2 ), methane (CH 4 ), and nitrous oxide (N 2 O) continuously at high frequency requires appropriate technology. We tested the combination of a commercial automated soil CO 2 flux chamber system (LI-8100A) with a CH 4 and N 2 O analyzer (Picarro G2308) in a tropical rainforest for 4 months. A chamber closure time of 2 min was sufficient for a reliable estimation of CO 2 and CH 4 fluxes (100% and 98.5% of fluxes were above minimum detectable flux – MDF, respectively). This closure time was generally not suitable for a reliable estimation of the low N 2 O fluxes in this ecosystem but was sufficient for detecting rare major peak events. A closure time of 25 min was more appropriate for reliable estimation of most N 2 O fluxes (85.6% of measured fluxes are above MDF±0.002 nmolm -2 s -1 ). Our study highlights the importance of adjusted closure time for each gas. © Author(s) 2019.
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Taureau, F., Robin, M., Proisy, C., Fromard, F., Imbert, D., & Debaine, F. (2019). Mapping the mangrove forest canopy using spectral unmixing of very high spatial resolution satellite images. Remote Sens., 11(3), 367.
Abstract: Despite the lowtree diversity and scarcity of the understory vegetation, the high morphological plasticity of mangrove trees induces, at the stand level, a very large variability of forest structures that need to be mapped for assessing the functioning of such complex ecosystems. Fully constrained linear spectral unmixing (FCLSU) of very high spatial resolution (VHSR) multispectral images was tested to fine-scale map mangrove zonations in terms of horizontal variation of forest structure. The study was carried out on three Pleiades-1A satellite images covering French island territories located in the Atlantic, Indian, and Pacific Oceans, namely Guadeloupe, Mayotte, and New Caledonia archipelagos. In each image, FCLSU was trained from the delineation of areas exclusively related to four components including either pure vegetation, soil (ferns included), water, or shadows. It was then applied to the whole mangrove cover imaged for each island and yielded the respective contributions of those four components for each image pixel. On the forest stand scale, the results interestingly indicated a close correlation between FCLSU-derived vegetation fractions and canopy closure estimated from hemispherical photographs R 2 = 0.95) and a weak relation with the Normalized Difference Vegetation Index (R 2 = 0.29). Classification of these fractions also offered the opportunity to detect and map horizontal patterns of mangrove structure in a given site. K-means classifications of fraction indeed showed a global view of mangrove structure organization in the three sites, complementary to the outputs obtained from spectral data analysis. Our findings suggest that the pixel intensity decomposition applied to VHSR multispectral satellite images can be a simple but valuable approach for (i) mangrove canopy monitoring and (ii) mangrove forest structure analysis in the perspective of assessing mangrove dynamics and productivity. As with Lidar-based surveys, these potential new mapping capabilities deserve further physically based interpretation of sunlight scattering mechanisms within forest canopy. © 2019 by the authors.
Keywords: Forest structure; Guadeloupe; Hemispherical photographs; Mangrove; Mayotte; New Caledonia; Remote sensing; Image resolution; Photography; Photomapping; Pixels; Remote sensing; Satellites; Vegetation; Forest structure; Guadeloupe; Hemispherical photographs; Mangrove; Mayotte; New Caledonia; Forestry
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Grossiord, C., Christoffersen, B., Alonso-Rodríguez, A. M., Anderson-Teixeira, K., Asbjornsen, H., Aparecido, L. M. T., et al. (2019). Precipitation mediates sap flux sensitivity to evaporative demand in the neotropics. Oecologia, 191(3), 519–530.
Abstract: Transpiration in humid tropical forests modulates the global water cycle and is a key driver of climate regulation. Yet, our understanding of how tropical trees regulate sap flux in response to climate variability remains elusive. With a progressively warming climate, atmospheric evaporative demand [i.e., vapor pressure deficit (VPD)] will be increasingly important for plant functioning, becoming the major control of plant water use in the twenty-first century. Using measurements in 34 tree species at seven sites across a precipitation gradient in the neotropics, we determined how the maximum sap flux velocity (vmax) and the VPD threshold at which vmax is reached (VPDmax) vary with precipitation regime [mean annual precipitation (MAP); seasonal drought intensity (PDRY)] and two functional traits related to foliar and wood economics spectra [leaf mass per area (LMA); wood specific gravity (WSG)]. We show that, even though vmax is highly variable within sites, it follows a negative trend in response to increasing MAP and PDRY across sites. LMA and WSG exerted little effect on vmax and VPDmax, suggesting that these widely used functional traits provide limited explanatory power of dynamic plant responses to environmental variation within hyper-diverse forests. This study demonstrates that long-term precipitation plays an important role in the sap flux response of humid tropical forests to VPD. Our findings suggest that under higher evaporative demand, trees growing in wetter environments in humid tropical regions may be subjected to reduced water exchange with the atmosphere relative to trees growing in drier climates. © 2019, Springer-Verlag GmbH Germany, part of Springer Nature.
Keywords: Evapotranspiration; Plant functional traits; Transpiration; Vapor pressure deficit; drought; evapotranspiration; flux measurement; hydrological cycle; Neotropical Region; precipitation (chemistry); precipitation (climatology); tree; tropical forest; tropical region; vapor pressure; water; drought; evapotranspiration; forest; tree; vapor pressure; Droughts; Forests; Plant Transpiration; Trees; Vapor Pressure; Water
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Honorio Coronado, E. N., Blanc-Jolivet, C., Mader, M., García-Dávila, C. R., Sebbenn, A. M., Meyer-Sand, B. R. V., et al. (2019). Development of nuclear and plastid SNP markers for genetic studies of Dipteryx tree species in Amazonia. Conserv. Genet. Res., 11(3), 333–336.
Abstract: We developed nuclear and plastid single nucleotide polymorphism (SNP) and insertion/deletion (INDEL) markers for Dipteryx species using a combination of restriction associated DNA sequencing (RADSeq) and low coverage MiSeq genome sequencing. Of the total 315 loci genotyped using a MassARRAY platform, 292 loci were variable and polymorphic among the 73 sampled individuals from French Guiana, Brasil, Peru, and Bolivia. A final set of 56 nuclear SNPs, 26 chloroplast SNPs, 2 chloroplast INDELs, and 32 mitochondrial SNPs identifying significant population structure was developed. This set of loci will be useful for studies on population genetics of Dipteryx species in Amazonia.
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