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Malé, P.-J.G.; Bardon, L.; Besnard, G.; Coissac, E.; Delsuc, F.; Engel, J.; Lhuillier, E.; Scotti-Saintagne, C.; Tinaut, A.; Chave, J. |
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Genome skimming by shotgun sequencing helps resolve the phylogeny of a pantropical tree family |
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Journal Article |
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2014 |
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Molecular Ecology Resources |
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Mol. Ecol. Resour. |
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14 |
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5 |
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966-975 |
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Next-generation sequencing; Organellar genome; Phylogenomics; Tropical trees |
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Whole genome sequencing is helping generate robust phylogenetic hypotheses for a range of taxonomic groups that were previously recalcitrant to classical molecular phylogenetic approaches. As a case study, we performed a shallow shotgun sequencing of eight species in the tropical tree family Chrysobalanaceae to retrieve large fragments of high-copy number DNA regions and test the potential of these regions for phylogeny reconstruction. We were able to assemble the nuclear ribosomal cluster (nrDNA), the complete plastid genome (ptDNA) and a large fraction of the mitochondrial genome (mtDNA) with approximately 1000×, 450× and 120× sequencing depth respectively. The phylogenetic tree obtained with ptDNA resolved five of the seven internal nodes. In contrast, the tree obtained with mtDNA and nrDNA data were largely unresolved. This study demonstrates that genome skimming is a cost-effective approach and shows potential in plant molecular systematics within Chrysobalanaceae and other under-studied groups. © 2014 John Wiley & Sons Ltd. |
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GeT-PlaGe, Genotoul, INRA Auzeville, Castanet-Tolosan, F-31326, France |
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Blackwell Publishing Ltd |
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17550998 (Issn) |
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Export Date: 1 September 2014; Correspondence Address: Malé, P.-J.G.; UMR 5174 Laboratoire Évolution and Diversité Biologique, CNRS, Université Paul Sabatier, ENFA, 118 route de Narbonne, Toulouse, F-31062, France; email: pjg.male@gmail.com |
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EcoFoG @ webmaster @ |
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559 |
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Carrias, J.-F.; Céréghino, R.; Brouard, O.; Pélozuelo, L.; Dejean, A.; Couté, A.; Corbara, B.; Leroy, C. |
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Two coexisting tank bromeliads host distinct algal communities on a tropical inselberg |
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Journal Article |
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2014 |
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Plant Biology |
Abbreviated Journal |
Plant Biol. |
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16 |
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5 |
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997-1004 |
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Algae; Bromeliaceae; Inselberg; Neotropics; Phytotelmata; Aechmea; algae; Bromeliaceae; Bumilleriopsis; Catopsis berteroniana; Chlorella (unclassified Chlorophyceae); Chlorella (unclassified Trebouxiophyceae); Chlorella sp.; Cyanobacteria; Eukaryota; Invertebrata; Protozoa |
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The tank bromeliads Aechmea aquilega (Salisb.) and Catopsis berteroniana (Schultes f.) coexist on a sun-exposed Neotropical inselberg in French Guiana, where they permit conspicuous freshwater pools to form that differ in size, complexity and detritus content. We sampled the algal communities (both eukaryotic and cyanobacterial taxa, including colourless forms) inhabiting either A. aquilega (n = 31) or C. berteroniana (n = 30) and examined differences in community composition and biomass patterns in relation to several biotic and abiotic variables. Chlorella sp. and Bumilleriopsis sp. were the most common taxa and dominated the algal biomass in A. aquilega and C. berteroniana, respectively. Using a redundancy analysis, we found that water volume, habitat complexity and the density of phagotrophic protozoa and collector-gatherer invertebrates were the main factors explaining the distribution of the algal taxa among the samples. Hierarchical clustering procedures based on abundance and presence/absence data clearly segregated the samples according to bromeliad species, revealing that the algal communities in the smaller bromeliad species were not a subset of the communities found in the larger bromeliad species. We conclude that, even though two coexisting tank bromeliad populations create adjacent aquatic habitats, each population hosts a distinct algal community. Hence, bromeliad diversity is thought to promote the local diversity of freshwater algae in the Neotropics. © 2014 German Botanical Society and The Royal Botanical Society of the Netherlands. |
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IRD, UMR AMAP (botAnique et bioinforMatique de l'Architecture des Plantes), Montpellier, France |
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Blackwell Publishing Ltd |
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14388677 (Issn) |
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Export Date: 2 September 2014; Coden: Pbiof; Correspondence Address: Carrias, J.-F.; Clermont Université, Université Blaise Pascal, BP 10448, F-63000 Clermont-Ferrand, France; email: j-francois.carrias@univ-bpclermont.fr; Funding Details: LQ13C020005, NSFC, National Natural Science Foundation of China |
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EcoFoG @ webmaster @ |
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560 |
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Touchard, A.; Koh, J.M.S.; Aili, S.R.; Dejean, A.; Nicholson, G.M.; Orivel, J.; Escoubas, P. |
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The complexity and structural diversity of ant venom peptidomes is revealed by mass spectrometry profiling |
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2015 |
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Rapid Communications in Mass Spectrometry |
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Rapid Communications in Mass Spectrometry |
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29 |
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5 |
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385-396 |
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Rationale Compared with other animal venoms, ant venoms remain little explored. Ants have evolved complex venoms to rapidly immobilize arthropod prey and to protect their colonies from predators and pathogens. Many ants have retained peptide-rich venoms that are similar to those of other arthropod groups. Methods With the goal of conducting a broad and comprehensive survey of ant venom peptide diversity, we investigated the peptide composition of venoms from 82 stinging ant species from nine subfamilies using matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry (MALDI-TOFMS). We also conducted an in-depth investigation of eight venoms using reversed-phase high-performance liquid chromatography (RP-HPLC) separation coupled with offline MALDI-TOFMS. Results Our results reveal that the peptide compositions of ant venom peptidomes from both poneroid and formicoid ant clades comprise hundreds of small peptides (<4 kDa), while large peptides (>4 kDa) are also present in the venom of formicoids. Chemical reduction revealed the presence of disulfide-linked peptides in most ant subfamilies, including peptides structured by one, two or three disulfide bonds as well as dimeric peptides reticulated by three disulfide bonds. Conclusions The biochemical complexity of ant venoms, associated with an enormous ecological and taxonomic diversity, suggests that stinging ant venoms constitute a promising source of bioactive molecules that could be exploited in the search for novel drug and biopesticide leads. Copyright © 2015 John Wiley & Sons, Ltd. Copyright © 2015 John Wiley & Sons, Ltd. |
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VenomeTech, 473 Route des DolinesValbonne, France |
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Export Date: 24 April 2015 |
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599 |
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Young, E.F.; Belchier, M.; Hauser, L.; Horsburgh, G.J.; Meredith, M.P.; Murphy, E.J.; Pascoal, S.; Rock, J.; Tysklind, N.; Carvalho, G.R. |
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Oceanography and life history predict contrasting genetic population structure in two Antarctic fish species |
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2015 |
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Evolutionary Applications |
Abbreviated Journal |
Evolutionary Applications |
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8 |
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5 |
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486-509 |
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Notothenia rossii; Champsocephalus gunnari; Connectivity; Individual-based Modelling; Ocean circulation; Planktonic dispersal; Population genetics; Scotia Sea |
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Understanding the key drivers of population connectivity in the marine environment is essential for the effective management of natural resources. Although several different approaches to evaluating connectivity have been used, they are rarely integrated quantitatively. Here, we use a 'seascape genetics' approach, by combining oceanographic modelling and microsatellite analyses, to understand the dominant influences on the population genetic structure of two Antarctic fishes with contrasting life histories, Champsocephalus gunnari and Notothenia rossii. The close accord between the model projections and empirical genetic structure demonstrated that passive dispersal during the planktonic early life stages is the dominant influence on patterns and extent of genetic structuring in both species. The shorter planktonic phase of C. gunnari restricts direct transport of larvae between distant populations, leading to stronger regional differentiation. By contrast, geographic distance did not affect differentiation in N. rossii, whose longer larval period promotes long-distance dispersal. Interannual variability in oceanographic flows strongly influenced the projected genetic structure, suggesting that shifts in circulation patterns due to climate change are likely to impact future genetic connectivity and opportunities for local adaptation, resilience and recovery from perturbations. Further development of realistic climate models is required to fully assess such potential impacts. © 2015 The Authors. |
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Campus Agronomique, Kourou Cedex, France |
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Export Date: 28 May 2015 |
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604 |
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Leclerc, T.; Vimal, R.; Troispoux, V.; Périgon, S.; Scotti, I. |
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Life after disturbance (I): changes in the spatial genetic structure of Jacaranda copaia (Aubl.) D. Don (Bignonianceae) after logging in an intensively studied plot in French Guiana |
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2015 |
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Annals of Forest Science |
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Annals of Forest Science |
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72 |
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5 |
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509-516 |
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Amazon; Bayesian clustering; Demogenetics; Guiana shield; Parentage analysis; Regeneration; Spatial genetic structure; Tropical rainforest |
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Key message: Forest disturbance affects the within-population distribution of genetic diversity, but not its overall levels, in a tropical pioneer tree species. In particular, clumps of related saplings with impoverished diversity are found in canopy gaps but not under forest cover. Context: Forest disturbances can have long-term consequences on the genetic structure of tree populations, because they can alter the demographic properties of the regeneration process and favour some subpopulations/genotypes, both by stochastic processes and by selection. Intermediate disturbances tend to favour species diversity, at least in highly diverse communities, but their effect on intra-specific diversity is unknown. Aims: In this study, we have looked at the genetic consequences of forest disturbance in a stand of the long-lived Neotropical pioneer species, Jacaranda copaia. Methods: The study site was experimentally logged in 1984, and the canopy gaps generated by the logging were mapped. Seedlings of J. copaia colonised the gaps, as expected, at a higher density than in the surrounding forest. In 2006, we exhaustively sampled all saplings and adult trees available in a 25-ha area. The samples were genotyped at nine microsatellite loci, and the distribution of genetic diversity was inspected by analyses of spatial autocorrelation, automated Bayesian assignment and comparisons of diversity between cohorts by bootstrap (RaBoT). Results: Spatial autocorrelation was found to extend farther in post-disturbance saplings than in the undisturbed population (100 m and beyond versus less than 50 m), and divergent clumps (F<inf>ST</inf> = 0.05) of related genotypes were found; genetic diversity was found to be impoverished in each clump relative to the global population at about half of the loci. Conclusion: Overall, our results suggest that forest disturbance has changed the patterns of distribution of genetic diversity, with potential consequences on long-term population viability. © 2015, INRA and Springer-Verlag France. |
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INRA, URFM « Ecologie des Forêts Méditerranéennes », Domaine de Saint-Paul, Avignon, France |
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Export Date: 16 July 2015 |
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611 |
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Dezerald, O.; Céréghino, R.; Corbara, B.; Dejean, A.; Leroy, C. |
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Temperature: Diet Interactions Affect Survival through Foraging Behavior in a Bromeliad-Dwelling Predator |
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2015 |
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Biotropica |
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Biotropica |
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47 |
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5 |
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569-578 |
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Toxorhynchites haemorrhoidalis; Biocontrol agent; Development; French Guiana; Selective feeding behavior; Tank bromeliad |
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Temperature, food quantity and quality play important roles in insect growth and survival, influencing population dynamics as well as interactions with other community members. However, the interaction between temperature and diet and its ecological consequences have been poorly documented. Toxorhynchites are well-known biocontrol agents for container-inhabiting mosquito larvae. We found that Toxorhynchites haemorrhoidalis larvae (Diptera: Culicidae) inhabiting water-filled rosettes of tank bromeliads catch and eat prey of both aquatic (mosquito larvae) and terrestrial origin (ants), using distinct predatory methods. They carried out frontal attacks on ants, but ambushed mosquito larvae. In choice tests, T. haemorrhoidalis favored terrestrial prey. Temperature had a significant effect on predator development and survival through its interaction with diet, but did not alter the preference for ants. T. haemorrhoidalis larvae emerged quickly when fed only mosquito larvae, whereas all individuals died before pupation when fed only ants. We conclude that behavioral factors (i.e., attraction to ants that disturb the surface of the water) overtake physiological factors (i.e., the adverse outcome of elevated temperature and an ant-based diet) in determining a predator's response to temperature:diet interactions. Finally, because T. haemorrhoidalis larvae preferentially feed on terrestrial insects in tank bromeliads, mosquito larvae may indirectly benefit from predation release. © 2015 Association for Tropical Biology and Conservation Inc. |
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UMR AMAP (botAnique et Modelisation de l'Architecture des Plantes et des vegetations), IRD, Boulevard de la Lironde, TA A-51/PS2, Montpellier Cedex 5, France |
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Export Date: 17 September 2015 |
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624 |
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Guitet, S.; Pélissier, R.; Brunaux, O.; Jaouen, G.; Sabatier, D. |
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Geomorphological landscape features explain floristic patterns in French Guiana rainforest |
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2015 |
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Biodiversity and Conservation |
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Biodiversity and Conservation |
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24 |
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5 |
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1215-1237 |
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Geodiversity; Geomorphology; Landscapes; Species distribution; Tree community |
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Geomorphic landscape features have been suggested as indicators of forest diversity. However, their explanatory power has not yet been explicitly tested at a regional scale in tropical rainforest. We used forest inventories conducted according to a stratified sampling design (3,132 plots in 111 transects at 33 sites) and holistic multi-scale geomorphological mapping derived from a Shuttle Radar Topography Mission digital elevation model to describe and explain spatial patterns in floristic composition across French Guiana (80,000 km2). We measured and identified 123,906 trees with DBH ≥20 cm and used constrained and unconstrained ordinations to analyze variations in the abundance of 221 taxa and 51 families. Variance partitioning and variograms were used to detect spatial patterns in species composition, compare the explanatory power of spatial and environmental factors, and select the variables that best explain forest composition. Strong floristic patterns corresponded to a major latitudinal gradient and significant sub-regional floristic structure. Geomorphological landscapes shaped by historic climate fluctuations and major geological events successfully captured these patterns and explained the variation in abundance of 80 taxa, corresponding to 65 % of the inventoried trees. Our findings suggest that long-term forest dynamics are under substantial “geomorphographic control”. A geomorphological perspective on landscapes that incorporates current and past environmental filters and historical biogeographical processes could thus be used more systematically in tropical regions for regional planning and forest conservation. © 2014, Springer Science+Business Media Dordrecht. |
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UMR EcoFoG, AgroParisTech, Campus agronomique, Guyane Française, BP 316, Kourou, France |
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Export Date: 8 September 2015 |
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Talaga, S.; Dejean, A.; Carinci, R.; Gaborit, P.; Dusfour, I.; Girod, R. |
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Updated Checklist of the Mosquitoes (Diptera: Culicidae) of French Guiana |
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2015 |
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Journal of Medical Entomology |
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Journal of Medical Entomology |
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52 |
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5 |
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770-782 |
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culicid; Neotropics; South America; species checklist; vector |
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The incredible mosquito species diversity in the Neotropics can provoke major confusion during vector control programs when precise identification is needed. This is especially true in French Guiana where studies on mosquito diversity practically ceased 35 yr ago. In order to fill this gap, we propose here an updated and comprehensive checklist of the mosquitoes of French Guiana, reflecting the latest changes in classification and geographical distribution and the recognition of current or erroneous synonymies. This work was undertaken in order to help ongoing and future research on mosquitoes in a broad range of disciplines such as ecology, biogeography, and medical entomology. Thirty-two valid species cited in older lists have been removed, and 24 species have been added including 12 species (comprising two new genera and three new subgenera) reported from French Guiana for the first time. New records are from collections conducted on various phytotelmata in French Guiana and include the following species: Onirion sp. cf Harbach and Peyton (2000), Sabethes (Peytonulus) hadrognathus Harbach, Sabethes (Peytonulus) paradoxus Harbach, Sabethes (Peytonulus) soperi Lane and Cerqueira, Sabethes (Sabethinus) idiogenes Harbach, Sabethes (Sabethes) quasicyaneus Peryassú , Runchomyia (Ctenogoeldia) magna (Theobald), Wyeomyia (Caenomyiella) sp. cf Harbach and Peyton (1990), Wyeomyia (Dendromyia) ypsipola Dyar, Wyeomyia (Hystatomyia) lamellata (Bonne-Wepster and Bonne), Wyeomyia (Miamyia) oblita (Lutz), and Toxorhynchites (Lynchiella) guadeloupensis (Dyar and Knab). At this time, the mosquitoes of French Guiana are represented by 235 species distributed across 22 genera, nine tribes, and two subfamilies. |
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UnitÉ d'Entomologie Médicale, Institut Pasteur de la Guyane, 23 Avenue Pasteur, Cayenne Cedex, France |
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Export Date: 22 October 2015 |
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636 |
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Richard-Hansen, C.; Jaouen, G.; Denis, T.; Brunaux, O.; Marcon, E.; Guitet, S. |
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Landscape patterns influence communities of medium-to large-bodied vertebrates in undisturbed terra firme forests of French Guiana |
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2015 |
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Journal of Tropical Ecology |
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Journal of Tropical Ecology |
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31 |
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5 |
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423-436 |
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Animal communities; diversity; environmental heterogeneity; French Guiana; landscape ecology; species-habitat association |
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Whereas broad-scale Amazonian forest types have been shown to influence the structure of the communities of medium-to large-bodied vertebrates, their natural heterogeneity at smaller scale or within the terra firme forests remains poorly described and understood. Diversity indices of such communities and the relative abundance of the 21 most commonly observed species were compared from standardized line-transect data across 25 study sites distributed in undisturbed forests in French Guiana. We first assessed the relevance of a forest typology based on geomorphological landscapes to explain the observed heterogeneity. As previously found for tree beta-diversity patterns, this new typology proved to be a non-negligible factor underlying the beta diversity of the communities of medium-to large bodied vertebrates in French Guianan terra firme forests. Although the species studied are almost ubiquitous across the region, they exhibited habitat preferences through significant variation in abundance and in their association index with the different landscape types. As terra firme forests represent more than 90% of the Amazon basin, characterizing their heterogeneity-including faunal communities-is a major challenge in neotropical forest ecology. © 2015 Cambridge University Press. |
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ONCFS, EcoFoG, Kourou Cedex, France |
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Export Date: 16 November 2015 |
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Lenoir, A.; Devers, S.; Touchard, A.; Dejean, A. |
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The Guianese population of the fire ant Solenopsis saevissima is unicolonial |
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2016 |
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Insect Science |
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Insect Science |
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23 |
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5 |
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739-745 |
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biological invasions; cuticular hydrocarbons; fire ants; unicoloniality |
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Abstract |
In this study, conducted in French Guiana, a part of the native range of the fire ant Solenopsis saevissima, we compared the cuticular hydrocarbon profiles of media workers with previous results based on intraspecific aggressiveness tests. We noted a strong congruence between the two studies permitting us to delimit 2 supercolonies extending over large distances (up to 54 km), a phenomenon known as unicoloniality. Solenopsis geminata workers, taken as an out-group for cluster analyses, have a very different cuticular hydrocarbon profile. Because S. saevissima has been reported outside its native range, our conclusion is that this species has the potential to become invasive because unicoloniality (i.e., the main attribute for ants to become invasive) was shown at least for the Guianese population. © 2015 Institute of Zoology, Chinese Academy of Sciences |
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CNRS, Ecolab (UMR-CNRS 5245), Toulouse, France |
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Notes |
Export Date: 3 October 2016 |
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EcoFoG @ webmaster @ |
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696 |
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