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| Author | Kattge, J.; Bönisch, G.; Díaz, S.; Lavorel, S.; Prentice, I.C.; Leadley, P.; Tautenhahn, S.; Werner, G.D.A.; Aakala, T.; Abedi, M.; Acosta, A.T.R.; Adamidis, G.C.; Adamson, K.; Aiba, M.; Albert, C.H.; Alcántara, J.M.; Alcázar C, C.; Aleixo, I.; Ali, H.; Amiaud, B.; Ammer, C.; Amoroso, M.M.; Anand, M.; Anderson, C.; Anten, N.; Antos, J.; Apgaua, D.M.G.; Ashman, T.-L.; Asmara, D.H.; Asner, G.P.; Aspinwall, M.; Atkin, O.; Aubin, I.; Baastrup-Spohr, L.; Bahalkeh, K.; Bahn, M.; Baker, T.; Baker, W.J.; Bakker, J.P.; Baldocchi, D.; Baltzer, J.; Banerjee, A.; Baranger, A.; Barlow, J.; Barneche, D.R.; Baruch, Z.; Bastianelli, D.; Battles, J.; Bauerle, W.; Bauters, M.; Bazzato, E.; Beckmann, M.; Beeckman, H.; Beierkuhnlein, C.; Bekker, R.; Belfry, G.; Belluau, M.; Beloiu, M.; Benavides, R.; Benomar, L.; Berdugo-Lattke, M.L.; Berenguer, E.; Bergamin, R.; Bergmann, J.; Bergmann Carlucci, M.; Berner, L.; Bernhardt-Römermann, M.; Bigler, C.; Bjorkman, A.D.; Blackman, C.; Blanco, C.; Blonder, B.; Blumenthal, D.; Bocanegra-González, K.T.; Boeckx, P.; Bohlman, S.; Böhning-Gaese, K.; Boisvert-Marsh, L.; Bond, W.; Bond-Lamberty, B.; Boom, A.; Boonman, C.C.F.; Bordin, K.; Boughton, E.H.; Boukili, V.; Bowman, D.M.J.S.; Bravo, S.; Brendel, M.R.; Broadley, M.R.; Brown, K.A.; Bruelheide, H.; Brumnich, F.; Bruun, H.H.; Bruy, D.; Buchanan, S.W.; Bucher, S.F.; Buchmann, N.; Buitenwerf, R.; Bunker, D.E.; Bürger, J.; Burrascano, S.; Burslem, D.F.R.P.; Butterfield, B.J.; Byun, C.; Marques, M.; Scalon, M.C.; Caccianiga, M.; Cadotte, M.; Cailleret, M.; Camac, J.; Camarero, J.J.; Campany, C.; Campetella, G.; Campos, J.A.; Cano-Arboleda, L.; Canullo, R.; Carbognani, M.; Carvalho, F.; Casanoves, F.; Castagneyrol, B.; Catford, J.A.; Cavender-Bares, J.; Cerabolini, B.E.L.; Cervellini, M.; Chacón-Madrigal, E.; Chapin, K.; Chapin, F.S.; Chelli, S.; Chen, S.-C.; Chen, A.; Cherubini, P.; Chianucci, F.; Choat, B.; Chung, K.-S.; Chytrý, M.; Ciccarelli, D.; Coll, L.; Collins, C.G.; Conti, L.; Coomes, D.; Cornelissen, J.H.C.; Cornwell, W.K.; Corona, P.; Coyea, M.; Craine, J.; Craven, D.; Cromsigt, J.P.G.M.; Csecserits, A.; Cufar, K.; Cuntz, M.; da Silva, A.C.; Dahlin, K.M.; Dainese, M.; Dalke, I.; Dalle Fratte, M.; Dang-Le, A.T.; Danihelka, J.; Dannoura, M.; Dawson, S.; de Beer, A.J.; De Frutos, A.; De Long, J.R.; Dechant, B.; Delagrange, S.; Delpierre, N.; Derroire, G.; Dias, A.S.; Diaz-Toribio, M.H.; Dimitrakopoulos, P.G.; Dobrowolski, M.; Doktor, D.; Dřevojan, P.; Dong, N.; Dransfield, J.; Dressler, S.; Duarte, L.; Ducouret, E.; Dullinger, S.; Durka, W.; Duursma, R.; Dymova, O.; E-Vojtkó, A.; Eckstein, R.L.; Ejtehadi, H.; Elser, J.; Emilio, T.; Engemann, K.; Erfanian, M.B.; Erfmeier, A.; Esquivel-Muelbert, A.; Esser, G.; Estiarte, M.; Domingues, T.F.; Fagan, W.F.; Fagúndez, J.; Falster, D.S.; Fan, Y.; Fang, J.; Farris, E.; Fazlioglu, F.; Feng, Y.; Fernandez-Mendez, F.; Ferrara, C.; Ferreira, J.; Fidelis, A.; Finegan, B.; Firn, J.; Flowers, T.J.; Flynn, D.F.B.; Fontana, V.; Forey, E.; Forgiarini, C.; François, L.; Frangipani, M.; Frank, D.; Frenette-Dussault, C.; Freschet, G.T.; Fry, E.L.; Fyllas, N.M.; Mazzochini, G.G.; Gachet, S.; Gallagher, R.; Ganade, G.; Ganga, F.; García-Palacios, P.; Gargaglione, V.; Garnier, E.; Garrido, J.L.; de Gasper, A.L.; Gea-Izquierdo, G.; Gibson, D.; Gillison, A.N.; Giroldo, A.; Glasenhardt, M.-C.; Gleason, S.; Gliesch, M.; Goldberg, E.; Göldel, B.; Gonzalez-Akre, E.; Gonzalez-Andujar, J.L.; González-Melo, A.; González-Robles, A.; Graae, B.J.; Granda, E.; Graves, S.; Green, W.A.; Gregor, T.; Gross, N.; Guerin, G.R.; Günther, A.; Gutiérrez, A.G.; Haddock, L.; Haines, A.; Hall, J.; Hambuckers, A.; Han, W.; Harrison, S.P.; Hattingh, W.; Hawes, J.E.; He, T.; He, P.; Heberling, J.M.; Helm, A.; Hempel, S.; Hentschel, J.; Hérault, B.; Hereş, A.-M.; Herz, K.; Heuertz, M.; Hickler, T.; Hietz, P.; Higuchi, P.; Hipp, A.L.; Hirons, A.; Hock, M.; Hogan, J.A.; Holl, K.; Honnay, O.; Hornstein, D.; Hou, E.; Hough-Snee, N.; Hovstad, K.A.; Ichie, T.; Igić, B.; Illa, E.; Isaac, M.; Ishihara, M.; Ivanov, L.; Ivanova, L.; Iversen, C.M.; Izquierdo, J.; Jackson, R.B.; Jackson, B.; Jactel, H.; Jagodzinski, A.M.; Jandt, U.; Jansen, S.; Jenkins, T.; Jentsch, A.; Jespersen, J.R.P.; Jiang, G.-F.; Johansen, J.L.; Johnson, D.; Jokela, E.J.; Joly, C.A.; Jordan, G.J.; Joseph, G.S.; Junaedi, D.; Junker, R.R.; Justes, E.; Kabzems, R.; Kane, J.; Kaplan, Z.; Kattenborn, T.; Kavelenova, L.; Kearsley, E.; Kempel, A.; Kenzo, T.; Kerkhoff, A.; Khalil, M.I.; Kinlock, N.L.; Kissling, W.D.; Kitajima, K.; Kitzberger, T.; Kjøller, R.; Klein, T.; Kleyer, M.; Klimešová, J.; Klipel, J.; Kloeppel, B.; Klotz, S.; Knops, J.M.H.; Kohyama, T.; Koike, F.; Kollmann, J.; Komac, B.; Komatsu, K.; König, C.; Kraft, N.J.B.; Kramer, K.; Kreft, H.; Kühn, I.; Kumarathunge, D.; Kuppler, J.; Kurokawa, H.; Kurosawa, Y.; Kuyah, S.; Laclau, J.-P.; Lafleur, B.; Lallai, E.; Lamb, E.; Lamprecht, A.; Larkin, D.J.; Laughlin, D.; Le Bagousse-Pinguet, Y.; le Maire, G.; le Roux, P.C.; le Roux, E.; Lee, T.; Lens, F.; Lewis, S.L.; Lhotsky, B.; Li, Y.; Li, X.; Lichstein, J.W.; Liebergesell, M.; Lim, J.Y.; Lin, Y.-S.; Linares, J.C.; Liu, C.; Liu, D.; Liu, U.; Livingstone, S.; Llusià, J.; Lohbeck, M.; López-García, Á.; Lopez-Gonzalez, G.; Lososová, Z.; Louault, F.; Lukács, B.A.; Lukeš, P.; Luo, Y.; Lussu, M.; Ma, S.; Maciel Rabelo Pereira, C.; Mack, M.; Maire, V.; Mäkelä, A.; Mäkinen, H.; Malhado, A.C.M.; Mallik, A.; Manning, P.; Manzoni, S.; Marchetti, Z.; Marchino, L.; Marcilio-Silva, V.; Marcon, E.; Marignani, M.; Markesteijn, L.; Martin, A.; Martínez-Garza, C.; Martínez-Vilalta, J.; Mašková, T.; Mason, K.; Mason, N.; Massad, T.J.; Masse, J.; Mayrose, I.; McCarthy, J.; McCormack, M.L.; McCulloh, K.; McFadden, I.R.; McGill, B.J.; McPartland, M.Y.; Medeiros, J.S.; Medlyn, B.; Meerts, P.; Mehrabi, Z.; Meir, P.; Melo, F.P.L.; Mencuccini, M.; Meredieu, C.; Messier, J.; Mészáros, I.; Metsaranta, J.; Michaletz, S.T.; Michelaki, C.; Migalina, S.; Milla, R.; Miller, J.E.D.; Minden, V.; Ming, R.; Mokany, K.; Moles, A.T.; Molnár, A., V; Molofsky, J.; Molz, M.; Montgomery, R.A.; Monty, A.; Moravcová, L.; Moreno-Martínez, A.; Moretti, M.; Mori, A.S.; Mori, S.; Morris, D.; Morrison, J.; Mucina, L.; Mueller, S.; Muir, C.D.; Müller, S.C.; Munoz, F.; Myers-Smith, I.H.; Myster, R.W.; Nagano, M.; Naidu, S.; Narayanan, A.; Natesan, B.; Negoita, L.; Nelson, A.S.; Neuschulz, E.L.; Ni, J.; Niedrist, G.; Nieto, J.; Niinemets, Ü.; Nolan, R.; Nottebrock, H.; Nouvellon, Y.; Novakovskiy, A.; Nystuen, K.O.; O'Grady, A.; O'Hara, K.; O'Reilly-Nugent, A.; Oakley, S.; Oberhuber, W.; Ohtsuka, T.; Oliveira, R.; Öllerer, K.; Olson, M.E.; Onipchenko, V.; Onoda, Y.; Onstein, R.E.; Ordonez, J.C.; Osada, N.; Ostonen, I.; Ottaviani, G.; Otto, S.; Overbeck, G.E.; Ozinga, W.A.; Pahl, A.T.; Paine, C.E.T.; Pakeman, R.J.; Papageorgiou, A.C.; Parfionova, E.; Pärtel, M.; Patacca, M.; Paula, S.; Paule, J.; Pauli, H.; Pausas, J.G.; Peco, B.; Penuelas, J.; Perea, A.; Peri, P.L.; Petisco-Souza, A.C.; Petraglia, A.; Petritan, A.M.; Phillips, O.L.; Pierce, S.; Pillar, V.D.; Pisek, J.; Pomogaybin, A.; Poorter, H.; Portsmuth, A.; Poschlod, P.; Potvin, C.; Pounds, D.; Powell, A.S.; Power, S.A.; Prinzing, A.; Puglielli, G.; Pyšek, P.; Raevel, V.; Rammig, A.; Ransijn, J.; Ray, C.A.; Reich, P.B.; Reichstein, M.; Reid, D.E.B.; Réjou-Méchain, M.; de Dios, V.R.; Ribeiro, S.; Richardson, S.; Riibak, K.; Rillig, M.C.; Riviera, F.; Robert, E.M.R.; Roberts, S.; Robroek, B.; Roddy, A.; Rodrigues, A.V.; Rogers, A.; Rollinson, E.; Rolo, V.; Römermann, C.; Ronzhina, D.; Roscher, C.; Rosell, J.A.; Rosenfield, M.F.; Rossi, C.; Roy, D.B.; Royer-Tardif, S.; Rüger, N.; Ruiz-Peinado, R.; Rumpf, S.B.; Rusch, G.M.; Ryo, M.; Sack, L.; Saldaña, A.; Salgado-Negret, B.; Salguero-Gomez, R.; Santa-Regina, I.; Santacruz-García, A.C.; Santos, J.; Sardans, J.; Schamp, B.; Scherer-Lorenzen, M.; Schleuning, M.; Schmid, B.; Schmidt, M.; Schmitt, S.; Schneider, J.V.; Schowanek, S.D.; Schrader, J.; Schrodt, F.; Schuldt, B.; Schurr, F.; Selaya Garvizu, G.; Semchenko, M.; Seymour, C.; Sfair, J.C.; Sharpe, J.M.; Sheppard, C.S.; Sheremetiev, S.; Shiodera, S.; Shipley, B.; Shovon, T.A.; Siebenkäs, A.; Sierra, C.; Silva, V.; Silva, M.; Sitzia, T.; Sjöman, H.; Slot, M.; Smith, N.G.; Sodhi, D.; Soltis, P.; Soltis, D.; Somers, B.; Sonnier, G.; Sørensen, M.V.; Sosinski, E.E., Jr.; Soudzilovskaia, N.A.; Souza, A.F.; Spasojevic, M.; Sperandii, M.G.; Stan, A.B.; Stegen, J.; Steinbauer, K.; Stephan, J.G.; Sterck, F.; Stojanovic, D.B.; Strydom, T.; Suarez, M.L.; Svenning, J.-C.; Svitková, I.; Svitok, M.; Svoboda, M.; Swaine, E.; Swenson, N.; Tabarelli, M.; Takagi, K.; Tappeiner, U.; Tarifa, R.; Tauugourdeau, S.; Tavsanoglu, C.; te Beest, M.; Tedersoo, L.; Thiffault, N.; Thom, D.; Thomas, E.; Thompson, K.; Thornton, P.E.; Thuiller, W.; Tichý, L.; Tissue, D.; Tjoelker, M.G.; Tng, D.Y.P.; Tobias, J.; Török, P.; Tarin, T.; Torres-Ruiz, J.M.; Tóthmérész, B.; Treurnicht, M.; Trivellone, V.; Trolliet, F.; Trotsiuk, V.; Tsakalos, J.L.; Tsiripidis, I.; Tysklind, N.; Umehara, T.; Usoltsev, V.; Vadeboncoeur, M.; Vaezi, J.; Valladares, F.; Vamosi, J.; van Bodegom, P.M.; van Breugel, M.; Van Cleemput, E.; van de Weg, M.; van der Merwe, S.; van der Plas, F.; van der Sande, M.T.; van Kleunen, M.; Van Meerbeek, K.; Vanderwel, M.; Vanselow, K.A.; Vårhammar, A.; Varone, L.; Vasquez Valderrama, M.Y.; Vassilev, K.; Vellend, M.; Veneklaas, E.J.; Verbeeck, H.; Verheyen, K.; Vibrans, A.; Vieira, I.; Villacís, J.; Violle, C.; Vivek, P.; Wagner, K.; Waldram, M.; Waldron, A.; Walker, A.P.; Waller, M.; Walther, G.; Wang, H.; Wang, F.; Wang, W.; Watkins, H.; Watkins, J.; Weber, U.; Weedon, J.T.; Wei, L.; Weigelt, P.; Weiher, E.; Wells, A.W.; Wellstein, C.; Wenk, E.; Westoby, M.; Westwood, A.; White, P.J.; Whitten, M.; Williams, M.; Winkler, D.E.; Winter, K.; Womack, C.; Wright, I.J.; Wright, S.J.; Wright, J.; Pinho, B.X.; Ximenes, F.; Yamada, T.; Yamaji, K.; Yanai, R.; Yankov, N.; Yguel, B.; Zanini, K.J.; Zanne, A.E.; Zelený, D.; Zhao, Y.-P.; Zheng, J.; Zheng, J.; Ziemińska, K.; Zirbel, C.R.; Zizka, G.; Zo-Bi, I.C.; Zotz, G.; Wirth, C.; The Nutrient Network | ||||
| Title | TRY plant trait database – enhanced coverage and open access | Type | Journal Article | ||
| Year | 2020 | Publication | Global Change Biol. | Abbreviated Journal | Global Change Biol. |
| Volume | 26 | Issue  |
1 | Pages | 119-188 |
| Keywords | data coverage; data integration; data representativeness; functional diversity; plant traits; TRY plant trait database; biodiversity; data processing; database; ecological modeling; environmental factor; growth; intraspecific competition; access to information; biodiversity; ecology; ecosystem; plant; Access to Information; Biodiversity; Ecology; Ecosystem; Plants | ||||
| Abstract | Plant traits—the morphological, anatomical, physiological, biochemical and phenological characteristics of plants—determine how plants respond to environmental factors, affect other trophic levels, and influence ecosystem properties and their benefits and detriments to people. Plant trait data thus represent the basis for a vast area of research spanning from evolutionary biology, community and functional ecology, to biodiversity conservation, ecosystem and landscape management, restoration, biogeography and earth system modelling. Since its foundation in 2007, the TRY database of plant traits has grown continuously. It now provides unprecedented data coverage under an open access data policy and is the main plant trait database used by the research community worldwide. Increasingly, the TRY database also supports new frontiers of trait-based plant research, including the identification of data gaps and the subsequent mobilization or measurement of new data. To support this development, in this article we evaluate the extent of the trait data compiled in TRY and analyse emerging patterns of data coverage and representativeness. Best species coverage is achieved for categorical traits—almost complete coverage for ‘plant growth form’. However, most traits relevant for ecology and vegetation modelling are characterized by continuous intraspecific variation and trait–environmental relationships. These traits have to be measured on individual plants in their respective environment. Despite unprecedented data coverage, we observe a humbling lack of completeness and representativeness of these continuous traits in many aspects. We, therefore, conclude that reducing data gaps and biases in the TRY database remains a key challenge and requires a coordinated approach to data mobilization and trait measurements. This can only be achieved in collaboration with other initiatives. | ||||
| Address | Institute for Biology and Environmental Sciences, University Oldenburg, Oldenburg, Germany | ||||
| Corporate Author | Thesis | ||||
| Publisher | Blackwell Publishing Ltd | Place of Publication | Editor | ||
| Language | Summary Language | Original Title | |||
| Series Editor | Series Title | Abbreviated Series Title | |||
| Series Volume | Series Issue | Edition | |||
| ISSN | 13541013 (Issn) | ISBN | Medium | ||
| Area | Expedition | Conference | |||
| Notes | Approved | no | |||
| Call Number | EcoFoG @ webmaster @ | Serial | 918 | ||
| Permanent link to this record | |||||
| Author | Heuertz, M.; Caron, H.; Scotti-Saintagne, C.; Pétronelli, P.; Engel, J.; Tysklind, N.; Miloudi, S.; Gaiotto, F.A.; Chave, J.; Molino, J.-F.; Sabatier, D.; Loureiro, J.; Budde, K.B. | ||||
| Title | The hyperdominant tropical tree Eschweilera coriacea (Lecythidaceae) shows higher genetic heterogeneity than sympatric Eschweilera species in French Guiana | Type | Journal Article | ||
| Year | 2020 | Publication | Plant Ecology and Evolution | Abbreviated Journal | Plant Ecol. Evol. |
| Volume | 153 | Issue |
1 | Pages | 67-81 |
| Keywords | Cryptic species; Eschweilera; Hyperdominant tropical trees; Microsatellites; Species complex; Species delimitation | ||||
| Abstract | Background and aims – The evolutionary history of Amazonia’s hyperabundant tropical tree species, also known as “hyperdominant” species, remains poorly investigated. We assessed whether the hyperdominant Eschweilera coriacea (DC.) S.A.Mori (Lecythidaceae) represents a single genetically cohesive species, and how its genetic constitution relates to other species from the same clade with which it occurs sympatrically in French Guiana. Methods – We sampled 152 individuals in nine forest sites in French Guiana, representing 11 species of the genus Eschweilera all belonging to the Parvifolia clade, with emphasis on E. coriacea. Samples were genotyped at four simple sequence repeat (SSR) markers. We delimited gene pools, i.e., genetically coherent putative taxa, using STRUCTURE software and principal component analysis. We compared the genetic assignment of individuals with their morphological species determination and estimated genetic diversity and differentiation for gene pools and species. We also estimated genome size using flow cytometry. Key results – SSR profiles commonly displayed up to four alleles per genotype, suggesting that the investigated Eschweilera species bear a paleopolyploid signature. Flow cytometry suggested that the studied species are diploid with haploid genome sizes of 871–1046 Mbp. We detected five gene pools and observed a good correspondence between morphological and genetic delimitation for Eschweilera sagotiana Miers and the undescribed morphospecies E. sp. 3 (which resembles E. grandiflora (Aubl.) Sandwith), and to a lesser extent for E. decolorans Sandwith and E. micrantha (O.Berg) Miers. Eschweilera coriacea was the most genetically diverse species and included individuals assigned to each gene pool. Conclusions – We found no conclusive evidence for cryptic species within E. coriacea in French Guiana. SSRs detected fewer gene pools than expected based on morphology in the Parvifolia clade but discriminated evolutionary relationships better than available plastid markers. A positive trend between demographic abundance of species and allelic richness illustrates that hyperdominants may have a high evolutionary potential. This hypothesis can be tested using more powerful genomic data in combination with tree phenotypic trait variation and characterization of niche breadth, to enhance our understanding of the causes of hyperdominance in Amazonian trees. | ||||
| Address | University of Copenhagen, Forest, Nature and Biomass, Rolighedsvej 23, Frederiksberg C, DK-1958, Denmark | ||||
| Corporate Author | Thesis | ||||
| Publisher | Societe Royale de Botanique de Belgique | Place of Publication | Editor | ||
| Language | Summary Language | Original Title | |||
| Series Editor | Series Title | Abbreviated Series Title | |||
| Series Volume | Series Issue | Edition | |||
| ISSN | 20323913 (Issn) | ISBN | Medium | ||
| Area | Expedition | Conference | |||
| Notes | Approved | no | |||
| Call Number | EcoFoG @ webmaster @ | Serial | 928 | ||
| Permanent link to this record | |||||
| Author | Ramalho, M.O.; Duplais, C.; Orivel, J.; Dejean, A.; Gibson, J.C.; Suarez, A.V.; Moreau, C.S. | ||||
| Title | Development but not diet alters microbial communities in the Neotropical arboreal trap jaw ant Daceton armigerum: an exploratory study | Type | Journal Article | ||
| Year | 2020 | Publication | Scientific Reports | Abbreviated Journal | |
| Volume | 10 | Issue |
1 | Pages | 7350 |
| Keywords | |||||
| Abstract | To better understand the evolutionary significance of symbiotic interactions in nature, microbiome studies can help to identify the ecological factors that may shape host-associated microbial communities. In this study we explored both 16S and 18S rRNA microbial communities of D. armigerum from both wild caught individuals collected in the Amazon and individuals kept in the laboratory and fed on controlled diets. We also investigated the role of colony, sample type, development and caste on structuring microbial communities. Our bacterial results (16S rRNA) reveal that (1) there are colony level differences between bacterial communities; (2) castes do not structure communities; (3) immature stages (brood) have different bacterial communities than adults; and 4) individuals kept in the laboratory with a restricted diet showed no differences in their bacterial communities from their wild caught nest mates, which could indicate the presence of a stable and persistent resident bacterial community in this host species. The same categories were also tested for microbial eukaryote communities (18S rRNA), and (5) developmental stage has an influence on the diversity recovered; (6) the diversity of taxa recovered has shown this can be an important tool to understand additional aspects of host biology and species interactions. | ||||
| Address | |||||
| Corporate Author | Thesis | ||||
| Publisher | Place of Publication | Editor | |||
| Language | Summary Language | Original Title | |||
| Series Editor | Series Title | Abbreviated Series Title | |||
| Series Volume | Series Issue | Edition | |||
| ISSN | 2045-2322 | ISBN | Medium | ||
| Area | Expedition | Conference | |||
| Notes | Approved | no | |||
| Call Number | EcoFoG @ webmaster @ Ramalho2020 | Serial | 929 | ||
| Permanent link to this record | |||||
| Author | Pastorello, G.; Trotta, C.; Canfora, E.; Chu, H.; Christianson, D.; Cheah, Y.-W.; Poindexter, C.; Chen, J.; Elbashandy, A.; Humphrey, M.; Isaac, P.; Polidori, D.; Ribeca, A.; van Ingen, C.; Zhang, L.; Amiro, B.; Ammann, C.; Arain, M.A.; Ardö, J.; Arkebauer, T.; Arndt, S.K.; Arriga, N.; Aubinet, M.; Aurela, M.; Baldocchi, D.; Barr, A.; Beamesderfer, E.; Marchesini, L.B.; Bergeron, O.; Beringer, J.; Bernhofer, C.; Berveiller, D.; Billesbach, D.; Black, T.A.; Blanken, P.D.; Bohrer, G.; Boike, J.; Bolstad, P.V.; Bonal, D.; Bonnefond, J.-M.; Bowling, D.R.; Bracho, R.; Brodeur, J.; Brümmer, C.; Buchmann, N.; Burban, B.; Burns, S.P.; Buysse, P.; Cale, P.; Cavagna, M.; Cellier, P.; Chen, S.; Chini, I.; Christensen, T.R.; Cleverly, J.; Collalti, A.; Consalvo, C.; Cook, B.D.; Cook, D.; Coursolle, C.; Cremonese, E.; Curtis, P.S.; D'Andrea, E.; da Rocha, H.; Dai, X.; Davis, K.J.; De Cinti, B.; de Grandcourt, A.; De Ligne, A.; De Oliveira, R.C.; Delpierre, N.; Desai, A.R.; Di Bella, C.M.; di Tommasi, P.; Dolman, H.; Domingo, F.; Dong, G.; Dore, S.; Duce, P.; Dufrêne, E.; Dunn, A.; Dušek, J.; Eamus, D.; Eichelmann, U.; ElKhidir, H.A.M.; Eugster, W.; Ewenz, C.M.; Ewers, B.; Famulari, D.; Fares, S.; Feigenwinter, I.; Feitz, A.; Fensholt, R.; Filippa, G.; Fischer, M.; Frank, J.; Galvagno, M.; Gharun, M.; Gianelle, D.; Gielen, B.; Gioli, B.; Gitelson, A.; Goded, I.; Goeckede, M.; Goldstein, A.H.; Gough, C.M.; Goulden, M.L.; Graf, A.; Griebel, A.; Gruening, C.; Grünwald, T.; Hammerle, A.; Han, S.; Han, X.; Hansen, B.U.; Hanson, C.; Hatakka, J.; He, Y.; Hehn, M.; Heinesch, B.; Hinko-Najera, N.; Hörtnagl, L.; Hutley, L.; Ibrom, A.; Ikawa, H.; Jackowicz-Korczynski, M.; Janouš, D.; Jans, W.; Jassal, R.; Jiang, S.; Kato, T.; Khomik, M.; Klatt, J.; Knohl, A.; Knox, S.; Kobayashi, H.; Koerber, G.; Kolle, O.; Kosugi, Y.; Kotani, A.; Kowalski, A.; Kruijt, B.; Kurbatova, J.; Kutsch, W.L.; Kwon, H.; Launiainen, S.; Laurila, T.; Law, B.; Leuning, R.; Li, Y.; Liddell, M.; Limousin, J.-M.; Lion, M.; Liska, A.J.; Lohila, A.; López-Ballesteros, A.; López-Blanco, E.; Loubet, B.; Loustau, D.; Lucas-Moffat, A.; Lüers, J.; Ma, S.; Macfarlane, C.; Magliulo, V.; Maier, R.; Mammarella, I.; Manca, G.; Marcolla, B.; Margolis, H.A.; Marras, S.; Massman, W.; Mastepanov, M.; Matamala, R.; Matthes, J.H.; Mazzenga, F.; McCaughey, H.; McHugh, I.; McMillan, A.M.S.; Merbold, L.; Meyer, W.; Meyers, T.; Miller, S.D.; Minerbi, S.; Moderow, U.; Monson, R.K.; Montagnani, L.; Moore, C.E.; Moors, E.; Moreaux, V.; Moureaux, C.; Munger, J.W.; Nakai, T.; Neirynck, J.; Nesic, Z.; Nicolini, G.; Noormets, A.; Northwood, M.; Nosetto, M.; Nouvellon, Y.; Novick, K.; Oechel, W.; Olesen, J.E.; Ourcival, J.-M.; Papuga, S.A.; Parmentier, F.-J.; Paul-Limoges, E.; Pavelka, M.; Peichl, M.; Pendall, E.; Phillips, R.P.; Pilegaard, K.; Pirk, N.; Posse, G.; Powell, T.; Prasse, H.; Prober, S.M.; Rambal, S.; Rannik, Ü.; Raz-Yaseef, N.; Reed, D.; de Dios, V.R.; Restrepo-Coupe, N.; Reverter, B.R.; Roland, M.; Sabbatini, S.; Sachs, T.; Saleska, S.R.; Sánchez-Cañete, E.P.; Sanchez-Mejia, Z.M.; Schmid, H.P.; Schmidt, M.; Schneider, K.; Schrader, F.; Schroder, I.; Scott, R.L.; Sedlák, P.; Serrano-Ortíz, P.; Shao, C.; Shi, P.; Shironya, I.; Siebicke, L.; Šigut, L.; Silberstein, R.; Sirca, C.; Spano, D.; Steinbrecher, R.; Stevens, R.M.; Sturtevant, C.; Suyker, A.; Tagesson, T.; Takanashi, S.; Tang, Y.; Tapper, N.; Thom, J.; Tiedemann, F.; Tomassucci, M.; Tuovinen, J.-P.; Urbanski, S.; Valentini, R.; van der Molen, M.; van Gorsel, E.; van Huissteden, K.; Varlagin, A.; Verfaillie, J.; Vesala, T.; Vincke, C.; Vitale, D.; Vygodskaya, N.; Walker, J.P.; Walter-Shea, E.; Wang, H.; Weber, R.; Westermann, S.; Wille, C.; Wofsy, S.; Wohlfahrt, G.; Wolf, S.; Woodgate, W.; Li, Y.; Zampedri, R.; Zhang, J.; Zhou, G.; Zona, D.; Agarwal, D.; Biraud, S.; Torn, M.; Papale, D. | ||||
| Title | The FLUXNET2015 dataset and the ONEFlux processing pipeline for eddy covariance data | Type | Journal Article | ||
| Year | 2020 | Publication | Scientific data | Abbreviated Journal | Sci Data |
| Volume | 7 | Issue |
1 | Pages | 225 |
| Keywords | article; breathing; ecophysiology; ecosystem; Eddy covariance; licence; metadata; photosynthesis; pipeline; remote sensing; time series analysis; uncertainty | ||||
| Abstract | The FLUXNET2015 dataset provides ecosystem-scale data on CO2, water, and energy exchange between the biosphere and the atmosphere, and other meteorological and biological measurements, from 212 sites around the globe (over 1500 site-years, up to and including year 2014). These sites, independently managed and operated, voluntarily contributed their data to create global datasets. Data were quality controlled and processed using uniform methods, to improve consistency and intercomparability across sites. The dataset is already being used in a number of applications, including ecophysiology studies, remote sensing studies, and development of ecosystem and Earth system models. FLUXNET2015 includes derived-data products, such as gap-filled time series, ecosystem respiration and photosynthetic uptake estimates, estimation of uncertainties, and metadata about the measurements, presented for the first time in this paper. In addition, 206 of these sites are for the first time distributed under a Creative Commons (CC-BY 4.0) license. This paper details this enhanced dataset and the processing methods, now made available as open-source codes, making the dataset more accessible, transparent, and reproducible. | ||||
| Address | Euro-Mediterranean Centre on Climate Change Foundation (CMCC), Lecce, 73100, Italy | ||||
| Corporate Author | Thesis | ||||
| Publisher | NLM (Medline) | Place of Publication | Editor | ||
| Language | Summary Language | Original Title | |||
| Series Editor | Series Title | Abbreviated Series Title | |||
| Series Volume | Series Issue | Edition | |||
| ISSN | 20524463 (Issn) | ISBN | Medium | ||
| Area | Expedition | Conference | |||
| Notes | Approved | no | |||
| Call Number | EcoFoG @ webmaster @ | Serial | 958 | ||
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| Author | Nixon, S.; Agwa, A.; Robinson, S.; Walker, A.; Touchard, A.; Schroeder, C.; Vetter, I.; Kotze, A.C.; Herzig, V.; King, G.F. | ||||
| Title | Discovery and characterisation of novel peptides from Amazonian stinging ant venoms with antiparasitic activity | Type | Journal Article | ||
| Year | 2020 | Publication | Toxicon | Abbreviated Journal | Toxicon |
| Volume | 177 | Issue |
1 | Pages | S60 |
| Keywords | |||||
| Abstract | |||||
| Address | The Institute for Molecular Bioscience, The University of Queensland, Australia; CSIRO Agriculture and Food, Australia; CNRS, UMR Ecologie des forêts de Guyane, France | ||||
| Corporate Author | Thesis | ||||
| Publisher | NLM (Medline) | Place of Publication | Editor | ||
| Language | Summary Language | Original Title | |||
| Series Editor | Series Title | Abbreviated Series Title | |||
| Series Volume | Series Issue | Edition | |||
| ISSN | 18793150 (Issn) | ISBN | Medium | ||
| Area | Expedition | Conference | |||
| Notes | Approved | no | |||
| Call Number | EcoFoG @ webmaster @ | Serial | 973 | ||
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| Author | Garcia-Davila, C.; Aldana Gomero, D.; Renno, J.-F.; Diaz Soria, R.; Hidalgo Pizango, G.; Flores Llampazo, G.; Castro-Ruiz, D.; Mejia de Loayza, E.; Angulo Chavez, C.; Mader, M.; Tysklind, N.; Paredes-Villanueva, K.; del Castillo Torres, D.; Degen, B.; Honorio Coronado, E.N. | ||||
| Title | Molecular evidence for three genetic species of Dipteryx in the Peruvian Amazon | Type | Journal Article | ||
| Year | 2020 | Publication | Genetica | Abbreviated Journal | Genetica |
| Volume | 148 | Issue |
1 | Pages | 1-11 |
| Keywords | D. micrantha; Dipteryx charapilla; Genetic diversity; Microsatellites; Sequencing; Shihuahuaco; microsatellite DNA; plant DNA; allele; Dipteryx; DNA sequence; genetic variation; genetics; genotype; haplotype; Peru; phylogeny; plastid; river; species difference; Alleles; Dipteryx; DNA, Plant; Genetic Variation; Genotype; Haplotypes; Microsatellite Repeats; Peru; Phylogeny; Plastids; Rivers; Sequence Analysis, DNA; Species Specificity | ||||
| Abstract | There is a high international demand for timber from the genus Dipteryx, or “shihuahuaco” as it is known in Peru. Developing tools that allow the identification and discrimination of Dipteryx species is therefore important for supporting management of natural populations and to underpin legal trade of its timber. The objective of this study was the molecular characterization of Dipteryx species in the Peruvian Amazonia. Two plastid regions (cpDNA: trnH–psbA and matK) were sequenced and 11 microsatellite markers (nDNA) were genotyped for 32 individuals identified as Dipteryx charapilla, D. micrantha morphotype 1 and D. micrantha morphotype 2. Using the concatenated sequences of the plastid genes, we identified ten haplotypes that were not shared between the species or between the D. micrantha morphotypes. Haplotypic diversity was greater in D. micrantha morphotype 2 and D. charapilla than in D. micrantha morphotype 1, which presented only one haplotype with a wide distribution in Peru. The microsatellites allowed the discrimination of the same three clades and identified diagnostic alleles for each clade. These results allowed us to demonstrate that the two morphotypes of D. micrantha are different at both the plastid and nuclear markers, which supports the existence of three genetically distinct species in Peru. This study provides information for the genetic discrimination of Dipteryx species and emphasises the importance of conserving the genetic variability of this genus in the Peruvian Amazonia. © 2019, Springer Nature Switzerland AG. | ||||
| Address | Carrera de Ingeniería Foresta, Laboratorio de Dendrocronología, Facultad de Ciencias Agrícolas, Universidad Autónoma Gabriel René Moreno, Km 9 carretera al Norte, El Vallecito, Santa Cruz, Bolivia | ||||
| Corporate Author | Thesis | ||||
| Publisher | Springer | Place of Publication | Editor | ||
| Language | Summary Language | Original Title | |||
| Series Editor | Series Title | Abbreviated Series Title | |||
| Series Volume | Series Issue | Edition | |||
| ISSN | 00166707 (Issn) | ISBN | Medium | ||
| Area | Expedition | Conference | |||
| Notes | Approved | no | |||
| Call Number | EcoFoG @ webmaster @ | Serial | 990 | ||
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| Author | Van Langenhove, L.; Depaepe, T.; Vicca, S.; van den Berge, J.; Stahl, C.; Courtois, E.; Weedon, J.; Urbina, I.; Grau, O.; Asensio, D.; Peñuelas, J.; Boeckx, P.; Richter, A.; Van Der Straeten, D.; Janssens, I.A. | ||||
| Title | Regulation of nitrogen fixation from free-living organisms in soil and leaf litter of two tropical forests of the Guiana shield | Type | Journal Article | ||
| Year | 2020 | Publication | Plant and Soil | Abbreviated Journal | Plant Soil |
| Volume | 450 | Issue |
1-2 | Pages | 93-110 |
| Keywords | Free-living nitrogen fixation; French Guiana; Molybdenum; Nutrients; Phosphorus; Tropical forest; acetylene; leaf litter; molybdenum; nitrogen fixation; nutrient cycling; phosphorus; rainforest; reduction; soil biota; soil carbon; soil nitrogen; soil water; topographic effect; tropical forest; French Guiana | ||||
| Abstract | Background and aims: Biological fixation of atmospheric nitrogen (N2) is the main pathway for introducing N into unmanaged ecosystems. While recent estimates suggest that free-living N fixation (FLNF) accounts for the majority of N fixed in mature tropical forests, the controls governing this process are not completely understood. The aim of this study was to quantify FLNF rates and determine its drivers in two tropical pristine forests of French Guiana. Methods: We used the acetylene reduction assay to measure FLNF rates at two sites, in two seasons and along three topographical positions, and used regression analyses to identify which edaphic explanatory variables, including carbon (C), nitrogen (N), phosphorus (P) and molybdenum (Mo) content, pH, water and available N and P, explained most of the variation in FLNF rates. Results: Overall, FLNF rates were lower than measured in tropical systems elsewhere. In soils seasonal variability was small and FLNF rates differed among topographies at only one site. Water, P and pH explained 24% of the variation. In leaf litter, FLNF rates differed seasonally, without site or topographical differences. Water, C, N and P explained 46% of the observed variation. We found no regulatory role of Mo at our sites. Conclusions: Rates of FLNF were low in primary rainforest on poor soils on the Guiana shield. Water was the most important rate-regulating factor and FLNF increased with increasing P, but decreased with increasing N. Our results support the general assumption that N fixation in tropical lowland forests is limited by P availability. © 2019, The Author(s). | ||||
| Address | Department of Microbiology and Ecosystem Science, University of Vienna, Althanstr. 14, Vienna, 1090, Austria | ||||
| Corporate Author | Thesis | ||||
| Publisher | Springer | Place of Publication | Editor | ||
| Language | Summary Language | Original Title | |||
| Series Editor | Series Title | Abbreviated Series Title | |||
| Series Volume | Series Issue | Edition | |||
| ISSN | 0032079x (Issn) | ISBN | Medium | ||
| Area | Expedition | Conference | |||
| Notes | Approved | no | |||
| Call Number | EcoFoG @ webmaster @ | Serial | 971 | ||
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| Author | Urbina, I.; Grau, O.; Sardans, J.; Ninot, J.M.; Peñuelas, J. | ||||
| Title | Encroachment of shrubs into subalpine grasslands in the Pyrenees changes the plant-soil stoichiometry spectrum | Type | Journal Article | ||
| Year | 2020 | Publication | Plant and Soil | Abbreviated Journal | Plant Soil |
| Volume | 448 | Issue |
1-2 | Pages | 37-53 |
| Keywords | Nutrient stocks; Plant strategy; Plant-soil stoichiometry; Shrub encroachment; Subalpine grassland succession; aboveground biomass; biogeochemical cycle; carbon sequestration; ectomycorrhiza; fungus; grass; nitrogen; nutrient uptake; shrub; soil-vegetation interaction; stoichiometry; subalpine environment; succession; Europe; Pyrenees; Fungi | ||||
| Abstract | Aims: Shrub encroachment has been reported over a large proportion of the subalpine grasslands across Europe and is expected to have an important impact on the biogeochemical cycle of these ecosystems. We investigated the stoichiometric changes in the plant-soil system along the succession (e.g. increase in encroachment from unencroached grassland to mature shrubland) at two contrasting sites in the Pyrenees. Methods: We analyzed the chemical composition (C, N,15N, P, K, Ca, Mg and Fe) in the soil and in the aboveground plant compartments (leaves, leaf-litter and stems) of the main herbaceous species and shrubs at three contrasting stages of the succession: unencroached grassland, young shrubland and mature shrubland. Results: The plant-soil stoichiometry spectrum differed between the successional stages. Shrub encroachment generally increased the concentration of C and Ca and the C:N ratio and often reduced to concentrations of N, P and K in the leaves and leaf-litter, while several soil nutrient concentrations (N, P, K Ca and Mg) decreased. The stocks of C, N, P, Ca, and Mg in the total aboveground biomass increased with encroachment. Conclusions: Shrub encroachment favored the dominance of long-lived species with low concentrations of N and P in the plant-soil compartments, high C:nutrient ratios in the aboveground biomass and increase the uptake of N through ericoid or ectomycorrhizal fungi. We highlight the role of shrubs in the sequestration of C and nutrients through the allocation to the aboveground biomass. The changes in plant-soil elemental composition and stocks suggest a slowdown of the biogeochemical cycles in the subalpine mountain areas where shrub encroachment occurred. © 2020, Springer Nature Switzerland AG. | ||||
| Address | Biodiversity Research Institute (IRBio) and Department of Evolutionary Biology, Ecology and Environmental Sciences, University of Barcelona, Barcelona, Catalonia, Spain | ||||
| Corporate Author | Thesis | ||||
| Publisher | Springer | Place of Publication | Editor | ||
| Language | Summary Language | Original Title | |||
| Series Editor | Series Title | Abbreviated Series Title | |||
| Series Volume | Series Issue | Edition | |||
| ISSN | 0032079x (Issn) | ISBN | Medium | ||
| Area | Expedition | Conference | |||
| Notes | Approved | no | |||
| Call Number | EcoFoG @ webmaster @ | Serial | 983 | ||
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| Author | Schmitt, S.; Hérault, B.; Ducouret, É.; Baranger, A.; Tysklind, N.; Heuertz, M.; Marcon, É.; Cazal, S.O.; Derroire, G. | ||||
| Title | Topography consistently drives intra- and inter-specific leaf trait variation within tree species complexes in a Neotropical forest | Type | Journal Article | ||
| Year | 2020 | Publication | Oikos | Abbreviated Journal | Oikos |
| Volume | 129 | Issue |
10 | Pages | 1521-1530 |
| Keywords | intraspecific variability; leaf traits; Paracou; species complex; syngameon; tropical forests; Bayesian analysis; coexistence; divergence; genetic variation; hierarchical system; leaf area; local adaptation; niche overlap; species diversity; topography; tropical forest; Guyana Shield | ||||
| Abstract | Tropical forests shelter the highest species diversity worldwide, although genus diversity is lower than expected. In the species-rich genera, species complexes are composed of closely-related species that share large amounts of genetic variation. Despite the key role of species complexes in diversification, evolution and functioning of ecological communities, little is known on why species complexes arise and how they are maintained in Neotropical forests. Examining how individual phenotypes vary along environmental gradients, within and among closely-related species within species complexes, can reveal processes allowing species coexistence within species complexes. We examined leaf functional trait variation with topography in a hyperdiverse tropical forest of the Guiana Shield. We collected leaf functional traits from 766 trees belonging to five species in two species complexes in permanent plots encompassing a diversity of topographic positions. We tested the role of topography on leaf functional trait variation with a hierarchical Bayesian model, controlling for individual tree diameter effect. We show that, mirroring what has been previously observed among species and communities, individual leaf traits covary from acquisitive to conservative strategy within species. Moreover, decreasing wetness from bottomlands to plateaus was associated with a shift of leaf traits from an acquisitive to a conservative strategy both across and within closely-related species. Our results suggest that intraspecific trait variability widens species’ niches and converges at species’ margins where niches overlap, potentially implying local neutral processes. Intraspecific trait variability favors local adaptation and divergence of closely-related species within species complexes. It is potentially maintained through interspecific sharing of genetic variation through hybridization. © 2020 Nordic Society Oikos. Published by John Wiley & Sons Ltd | ||||
| Address | INRAE, UMR EcoFoG (Agroparistech, CNRS, Cirad, Université des Antilles, Univ. de la Guyane), Kourou, French Guiana | ||||
| Corporate Author | Thesis | ||||
| Publisher | Blackwell Publishing Ltd | Place of Publication | Editor | ||
| Language | Summary Language | Original Title | |||
| Series Editor | Series Title | Abbreviated Series Title | |||
| Series Volume | Series Issue | Edition | |||
| ISSN | 00301299 (Issn) | ISBN | Medium | ||
| Area | Expedition | Conference | |||
| Notes | Approved | no | |||
| Call Number | EcoFoG @ webmaster @ | Serial | 950 | ||
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| Author | Laybros, A.; Aubry-Kientz, M.; Féret, J.-B.; Bedeau, C.; Brunaux, O.; Derroire, G.; Vincent, G. | ||||
| Title | Quantitative airborne inventories in dense tropical forest using imaging spectroscopy | Type | Journal Article | ||
| Year | 2020 | Publication | Remote Sensing | Abbreviated Journal | Remote Sens. |
| Volume | 12 | Issue |
10 | Pages | 1577 |
| Keywords | Hyperspectral; LiDAR; Species diversity; Tropical forest; Cost effectiveness; Discriminant analysis; Infrared devices; Infrared radiation; Logistic regression; Remote sensing; Tropics; Classification accuracy; Classification performance; Linear discriminant analysis; Operational applications; Regularized discriminant analysis; Remote sensing technology; Short wave infrared bands; Visible and near infrared; Forestry | ||||
| Abstract | Tropical forests have exceptional floristic diversity, but their characterization remains incomplete, in part due to the resource intensity of in-situ assessments. Remote sensing technologies can provide valuable, cost-effective, large-scale insights. This study investigates the combined use of airborne LiDAR and imaging spectroscopy to map tree species at landscape scale in French Guiana. Binary classifiers were developed for each of 20 species using linear discriminant analysis (LDA), regularized discriminant analysis (RDA) and logistic regression (LR). Complementing visible and near infrared (VNIR) spectral bands with short wave infrared (SWIR) bands improved the mean average classification accuracy of the target species from 56.1% to 79.6%. Increasing the number of non-focal species decreased the success rate of target species identification. Classification performance was not significantly affected by impurity rates (confusion between assigned classes) in the non-focal class (up to 5% of bias), provided that an adequate criterion was used for adjusting threshold probability assignment. A limited number of crowns (30 crowns) in each species class was sufficient to retrieve correct labels effectively. Overall canopy area of target species was strongly correlated to their basal area over 118 ha at 1.5 ha resolution, indicating that operational application of the method is a realistic prospect (R2 = 0.75 for six major commercial tree species). © 2020 by the authors. | ||||
| Address | Cirad, UMR EcoFoG (AgroParistech, CNRS, INRAE, Université des Antilles, Université de la Guyane), Kourou, French Guiana, 97379, France | ||||
| Corporate Author | Thesis | ||||
| Publisher | Mdpi Ag | Place of Publication | Editor | ||
| Language | Summary Language | Original Title | |||
| Series Editor | Series Title | Abbreviated Series Title | |||
| Series Volume | Series Issue | Edition | |||
| ISSN | 20724292 (Issn) | ISBN | Medium | ||
| Area | Expedition | Conference | |||
| Notes | Approved | no | |||
| Call Number | EcoFoG @ webmaster @ | Serial | 969 | ||
| Permanent link to this record | |||||