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Kattge, J., Bönisch, G., Díaz, S., Lavorel, S., Prentice, I. C., Leadley, P., et al. (2020). TRY plant trait database – enhanced coverage and open access. Global Change Biol., 26(1), 119–188.
Abstract: Plant traits—the morphological, anatomical, physiological, biochemical and phenological characteristics of plants—determine how plants respond to environmental factors, affect other trophic levels, and influence ecosystem properties and their benefits and detriments to people. Plant trait data thus represent the basis for a vast area of research spanning from evolutionary biology, community and functional ecology, to biodiversity conservation, ecosystem and landscape management, restoration, biogeography and earth system modelling. Since its foundation in 2007, the TRY database of plant traits has grown continuously. It now provides unprecedented data coverage under an open access data policy and is the main plant trait database used by the research community worldwide. Increasingly, the TRY database also supports new frontiers of trait-based plant research, including the identification of data gaps and the subsequent mobilization or measurement of new data. To support this development, in this article we evaluate the extent of the trait data compiled in TRY and analyse emerging patterns of data coverage and representativeness. Best species coverage is achieved for categorical traits—almost complete coverage for ‘plant growth form’. However, most traits relevant for ecology and vegetation modelling are characterized by continuous intraspecific variation and trait–environmental relationships. These traits have to be measured on individual plants in their respective environment. Despite unprecedented data coverage, we observe a humbling lack of completeness and representativeness of these continuous traits in many aspects. We, therefore, conclude that reducing data gaps and biases in the TRY database remains a key challenge and requires a coordinated approach to data mobilization and trait measurements. This can only be achieved in collaboration with other initiatives.
Keywords: data coverage; data integration; data representativeness; functional diversity; plant traits; TRY plant trait database; biodiversity; data processing; database; ecological modeling; environmental factor; growth; intraspecific competition; access to information; biodiversity; ecology; ecosystem; plant; Access to Information; Biodiversity; Ecology; Ecosystem; Plants
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Duplais, C., Papon, N., & Courdavault, V. (2020). Tracking the Origin and Evolution of Plant Metabolites. Trends Plant Sci., 25(12), 1182–1184.
Abstract: Iridoids are monoterpenes that are produced by various plants as chemical defense molecules. Lichman et al. recently described the timeline of molecular events that underpin the re-emergence of iridoid biosynthesis in an independent lineage of aromatic plants (catnip). This study represents a benchmark for studying enzyme and metabolite evolution in different clades across the tree of life. © 2020 Elsevier Ltd
Keywords: enzyme evolution; iridoids; Lamiaceae; nepetalactone; plant metabolites
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Houel, E., Rodrigues, A. M. S., Jahn-Oyac, A., Bessière, J. - M., Eparvier, V., Deharo, E., et al. (2014). In vitro antidermatophytic activity of Otacanthus azureus (Linden) Ronse essential oil alone and in combination with azoles. J. Appl. Microbiol., 116(2), 288–294.
Abstract: Aims: We determined the chemical composition and investigated the antifungal activity of Otacanthus azureus (Linden) Ronse essential oil (EO) against a range of dermatophytes alone or in combination with azole antifungals. Methods and Results: Aerial parts of the plant were steam-distilled and the obtained oil was analysed by gas chromatography/mass spectrometry and 1H-NMR. It was shown to be largely composed of sesquiterpenes, with the main component being β-copaen-4-α-ol. Using broth microdilution techniques, this oil was found to have remarkable in vitro antifungal activities. Minimum inhibitory concentrations as low as 4 μg ml-1 were recorded. The analysis of the combined effect of the O. azureus EO with azoles using chequerboard assays revealed a synergism between the EO and ketoconazole, fluconazole or itraconazole against Trichophyton mentagrophytes. Notably, the O. azureus essential oil showed low cytotoxicity to VERO cells. Conclusions: The O. azureus essential oil alone or in combination with azoles is a promising antifungal agent in the treatment for human dermatomycoses caused by filamentous fungi. Significance and Impact of the Study: There is much interest in the study of essential oils for the discovery of new antimicrobial drugs. This study has highlighted the antidermatophytic activity of the O. azureus EO. © 2013 The Society for Applied Microbiology.
Keywords: Antifungal activity; Azoles; Dermatophytes; Essential oil; Otacanthus azureus; Synergy
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Dezerald, O., Leroy, C., Corbara, B., Dejean, A., Talaga, S., & Céréghino, R. (2017). Environmental drivers of invertebrate population dynamics in Neotropical tank bromeliads. Freshw Biol, 62(2), 229–242.
Abstract: Tank bromeliads form a conspicuous, yet neglected freshwater habitat in Neotropical forests. Recent studies driven by interests in medical entomology, fundamental aspects of bromeliad ecology and experimental research on food webs have, however, prompted increasing interest in bromeliad aquatic ecosystems. As yet, there is nothing in the literature about the life histories and environmental drivers of invertebrate population dynamics in tank bromeliads.
Based on fortnightly samples taken over one year, size frequency plots and individual dry masses allowed us to establish the life cycles and growth rates of the dominant aquatic invertebrates in a common bromeliad species of French Guiana. Linear mixed-effect models and Mantel tests were used to predict changes in density, biomass, and growth rates in relation to temperature, rainfall, humidity and detrital resources. Annual variations in invertebrate densities and biomasses could be described according to three types of distribution: unimodal, bimodal or almost constant. Despite seasonal variations, precipitation, temperature, relative humidity and detritus concentration accounted significantly for changes in density and biomass, but we found no significant responses in growth rates of most invertebrate species. Species rather displayed non-seasonal life cycles with overlapping cohorts throughout the year. There was also a trend for delayed abundance peaks among congeneric species sharing similar functional traits, suggesting temporal partitioning of available resources. Beyond novel knowledge, quantitative information on life histories is important to predict food-web dynamics under the influence of external forcing and self-organisation. Our results suggest that changes in species distribution that will affect population dynamics through biotic interactions in space and/or time could have greater effects on food webs and ecosystem functioning than changes in environmental factors per se. Keywords: food webs; freshwater invertebrates; growth rate; life history; rainforest
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Stahl, C., Fontaine, S., Klumpp, K., Picon-Cochard, C., Grise, M. M., Dezecache, C., et al. (2017). Continuous soil carbon storage of old permanent pastures in Amazonia. Glob Change Biol, 23(8), 3382–3392.
Abstract: Amazonian forests continuously accumulate carbon (C) in biomass and in soil, representing a carbon sink of 0.42–0.65 GtC yr−1. In recent decades, more than 15% of Amazonian forests have been converted into pastures, resulting in net C emissions (~200 tC ha−1) due to biomass burning and litter mineralization in the first years after deforestation. However, little is known about the capacity of tropical pastures to restore a C sink. Our study shows in French Amazonia that the C storage observed in native forest can be partly restored in old (≥24 year) tropical pastures managed with a low stocking rate (±1 LSU ha−1) and without the use of fire since their establishment. A unique combination of a large chronosequence study and eddy covariance measurements showed that pastures stored between −1.27 ± 0.37 and −5.31 ± 2.08 tC ha−1 yr−1 while the nearby native forest stored −3.31 ± 0.44 tC ha−1 yr−1. This carbon is mainly sequestered in the humus of deep soil layers (20–100 cm), whereas no C storage was observed in the 0- to 20-cm layer. C storage in C4 tropical pasture is associated with the installation and development of C3 species, which increase either the input of N to the ecosystem or the C:N ratio of soil organic matter. Efforts to curb deforestation remain an obvious priority to preserve forest C stocks and biodiversity. However, our results show that if sustainable management is applied in tropical pastures coming from deforestation (avoiding fires and overgrazing, using a grazing rotation plan and a mixture of C3 and C4 species), they can ensure a continuous C storage, thereby adding to the current C sink of Amazonian forests.
Keywords: carbon storage; CN coupling; deep soil; mixed-grass pasture; native forest
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Denis, T., Hérault, B., Brunaux, O., Guitet, S., & Richard-Hansen, C. (2018). Weak environmental controls on the composition and diversity of medium and large-sized vertebrate assemblages in neotropical rain forests of the Guiana Shield. Diversity Distrib., 24(11), 1545–1559.
Abstract: Aim: Despite their often high-trophic position and their contribution to many ecosystem functions, little is known about the factors affecting assemblage structure of medium- and large-sized neotropical vertebrates. We examined the relative roles played by the physical and biological environment, and by purely spatial processes, in shaping the composition and diversities of these vertebrate assemblages. Then, based on the theory that the Guianan forest cover shrank to isolated pockets during the late Pleistocene–Holocene, we tested if the past forest refugia may have shaped current vertebrate assemblages. Location: French Guiana, Guiana Shield, South America. Methods: Abundances of 19 medium- and large-sized vertebrates were estimated at 21 locations in undisturbed Guianan rain forests. Using taxonomic, functional and phylogenetic metrics, we partitioned the effects of a range of physical and biological environmental conditions and purely spatial predictors in shaping both assemblage composition and (alpha and beta) diversities. Results: We identified a significant, but weak relationship between taxonomic, functional and phylogenetic assemblage composition and environmental conditions. Assemblage diversity patterns were mainly explained by spatial predictors irrespective of the metrics. Current assemblage diversities are correlated with Pleistocene–Holocene forest history, with the highest alpha diversities outside of putative forest refugia, and the highest beta diversities inside these areas. Main conclusions: Current vertebrate assemblage composition is not strongly marked by common environmental factors. Our main conclusion is that assemblage composition results from individual species responses to the environment. Our findings also suggest that dispersal-related processes or more probably historical processes shape (alpha and beta) diversity patterns. In fact, forest fragmentation during Pleistocene–Holocene climate changes could have led to isolated vertebrate assemblages evolving into unique species assemblages creating the current high beta diversity inside refugia, whereas the lower habitat stability outside of refugia could have led to mixed assemblages in areas recolonized by forest vertebrates (current high alpha diversity outside of refugia).
Keywords: biodiversity; birds; functional traits; mammals; refugia hypothesis; spatial patterns; Aves; Mammalia; Vertebrata
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Lamarre, G. P. A., Mendoza, I., Fine, P. V. A., & Baraloto, C. (2014). Leaf synchrony and insect herbivory among tropical tree habitat specialists. Plant Ecol., 215(2), 209–220.
Abstract: Growth defense tradeoff theory predicts that plants in low-resource habitats invest more energy in defense mechanisms against natural enemies than growth, whereas plants in high-resource habitats can afford higher leaf loss rates. A less-studied defense against herbivores involves the synchrony of leaf production, which can be an effective defense strategy if leaf biomass production exceeds the capacity of consumption by insects. The aim of this study was to determine whether leaf synchrony varied across habitats with different available resources and whether insects were able to track young leaf production among tree habitat specialists in a tropical forest of French Guiana. We predicted that high-resource habitats would exhibit more synchrony in leaf production due to the low cost and investment to replace leaf tissue. We also expected closer patterns of leaf synchrony and herbivory within related species, assuming that they shared herbivores. We simultaneously monitored leaf production and herbivory rates of five pairs of tree species, each composed of a specialist of terra firme or white-sand forests within the same lineage. Our prediction was not supported by the strong interaction of habitat and lineage for leaf synchrony within individuals of the same species; although habitat specialists differed in leaf synchrony within four of five lineages, the direction of the effect was variable. All species showed short time lags for the correlation between leaf production and herbivory, suggesting that insects are tightly tracking leaf production, especially for the most synchronous species. Leaf synchrony may provide an important escape defense against herbivores, and its expression appears to be constrained by both evolutionary history and environmental factors. © 2014 Springer Science+Business Media Dordrecht.
Keywords: Escape; French Guiana; Herbivorous insects; Phenology; Resource availability; Time lag
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Herault, B., Bornet, A., & Tremolieres, M. (2008). Redundancy and niche differentiation among the European invasive Elodea species. Biol. Invasions, 10(7), 1099–1107.
Abstract: Community ecologists implicitly assume redundancy when they aggregate species into functional groups. But there have been remarkably few empirical efforts to investigate the accuracy of this concept in situ. The concept of redundancy could be roughly split into two components: the ecological redundancy (similar response to environmental variations involving similar ecological processes) and the functional redundancy (similar biological trait combinations shaping similar functional processes). Both types of redundancy are tested among the 3 invasive European Elodeas. In 11 sites and during two successive years 2004-2005, the cover growth rate of each Elodea species was monthly recorded. To test ecological redundancy, cover growth rates were related to a large suite of environmental variables. To test functional redundancy, 13 biological traits involved in competitive relationships were measured each month. Firstly, the redundancy hypothesis looks problematic for Elodea ernstiae. Indeed, the later possess numerous biological traits involved in light competition and niche overlap with the other Elodeas is very low. Secondly, ecological and functional redundancy can be successfully applied to Elodea canadensis and Elodea nuttallii. They share a large suite of biological traits leading to wide niche overlaps through the growing season. And the measured environmental variables do not differentially influence their growth rates, which are, in turn, controlled by a similar group of biological traits. In this way, the different invasiveness patterns of E. canadensis and E. nuttallii could be solely due to the ecological drift and their ecological dynamic could follow neutral rules.
Keywords: biological traits; functional equivalence; invasivness; niche overlapping; waterweeds
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Petillon, J., Lambeets, K., Montaigne, W., Maelfait, J. P., & Bonte, D. (2010). Habitat structure modified by an invasive grass enhances inundation withstanding in a salt-marsh wolf spider. Biological Invasions, 12(9), 3219–3226. |
Delnatte, C., & Meyer, J. - Y. (2012). Plant introduction, naturalization, and invasion in French Guiana (South America). Biol. Invasions, 14(5), 915–927.
Abstract: Continental tropical ecosystems are generally viewed as less vulnerable to biological invasions than island ones. Their apparent resistance to invasive alien species is often attributed to their higher native biota diversity and complexity. However, with the increase of human activities and disturbances and the accelerate rate of introductions of plant species, these apparently resilient continental ecosystems are now experiencing alien plant naturalization and invasion events. In order to illustrate this emergent phenomenon, we compiled a list of all known introduced and naturalized plant species in French Guiana (Guiana Shield, South America). A total of 490 alien plants were recorded, about 34% of which are currently naturalized, mainly species belonging to the Acanthaceae and Fabaceae (Faboideae) in the Eudicotyledons, and Poaceae (grasses) and Arecaceae (palms) in the Monocotyledons. The coastal dry and wet savannas appears to be vulnerable to plant invasion (with 165 naturalized species, about 34% of the alien flora), especially by Acacia mangium (Mimosaceae) and Melaleuca quinquenervia (Myrtaceae) which are forming localized but dense monotypic stands. Both tree species, intentionnally introduced for reforestation, rehabilitation, and as garden ornamentals and have the potential to spread with increasing human disturbances The number and abundance of naturalized alien plants in the relatively undisturbed tropical lowland rainforests and savannas remains still very low. Therefore, surveillance, early detection, and eradication of potential plant invaders are crucial; moreover collaboration with neighbouring countries of the Guiana Shield is essential to prevent the introduction of potentially invasive species which are still not present in French Guiana. © 2011 Springer Science+Business Media B.V.
Keywords: Acacia mangium; French Guiana; Invasive plant; Melaleuca quinquenervia; Naturalization; Savanna
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