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Author Zinger, L.; Donald, J.; Brosse, S.; Gonzalez, M.A.; Iribar, A.; Leroy, C.; Murienne, J.; Orivel, J.; Schimann, H.; Taberlet, P.; Lopes, C.M.
Title Advances and prospects of environmental DNA in neotropical rainforests Type Journal Article
Year 2020 Publication Advances in Ecological Research Abbreviated Journal Adv. Ecol. Res.
Volume 62 Issue Pages 331-373
Keywords Biomonitoring; Conservation biology; DNA metabarcoding; eDNA; Environmental genomics; Neotropics; Rainforests
Abstract The rainforests of the Neotropics shelter a vast diversity of plant, animal and microscopic species that provide critical ecosystem goods and services for both local and worldwide populations. These environments face a major crisis due to increased deforestation, pollution, and climate change, emphasizing the need for more effective conservation efforts. The adequate monitoring of these ecosystems has proven a complex and time consuming endeavour, which depends on ever dwindling taxonomic expertise. To date, many species remain undiscovered, let alone described, with otherwise limited information regarding known species population distributions and densities. Overcoming these knowledge shortfalls and practical limitations is becoming increasingly possible through techniques based on environmental DNA (eDNA), i.e., DNA that can be obtained from environmental samples (e.g. tissues, soil, sediment, water, etc.). When coupled with high-throughput sequencing, these techniques now enable realistic, cost-effective, and standardisable biodiversity assessments. This opens up enormous opportunities for advancing our understanding of complex and species-rich tropical communities, but also in facilitating large-scale biomonitoring programs in the neotropics. In this review, we provide a brief introduction to eDNA methods, and an overview of their current and potential uses in both terrestrial and aquatic ecosystems of neotropical rainforests. We also discuss the limits and challenges of these methods for our understanding and monitoring of biodiversity, as well as future research and applied perspectives of these techniques in neotropical rainforests, and beyond. © 2020 Elsevier Ltd
Address Departamento de Zoologia, Instituto de Biociências, Universidade Estadual Paulista (UNESP), Rio Claro, SP, Brazil
Corporate Author Thesis
Publisher Academic Press Inc. Place of Publication Editor Dumbrell A.J.; Turner E.C.; Fayle T.M.
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title Advances in Ecological Research
Series Volume 62 Series Issue Edition
ISSN (up) 00652504 (Issn); 9780128211342 (Isbn) ISBN Medium
Area Expedition Conference
Notes Approved no
Call Number EcoFoG @ webmaster @ Serial 995
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Author Sayer, E.J.; Rodtassana, C.; Sheldrake, M.; Bréchet, L.M.; Ashford, O.S.; Lopez-Sangil, L.; Kerdraon-Byrne, D.; Castro, B.; Turner, B.L.; Wright, S.J.; Tanner, E.V.J.
Title Revisiting nutrient cycling by litterfall—Insights from 15 years of litter manipulation in old-growth lowland tropical forest Type Journal Article
Year 2020 Publication Advances in Ecological Researc Abbreviated Journal Adv. Ecol. Res.
Volume 62 Issue Pages 173-223
Keywords Forest floor; Litter addition; Litter removal; Litterfall; Nutrient cycling; Nutrient use efficiency; Soil fertility; Trace elements; Tropical lowland forest
Abstract The crucial role of tropical forests in the global carbon balance is underpinned by their extraordinarily high biomass and productivity, even though the majority of tropical forests grow on nutrient-poor soils. Nutrient cycling by litterfall has long been considered essential for maintaining high primary productivity in lowland tropical forests but few studies have tested this assumption experimentally. We review and synthesise findings from the Gigante Litter Manipulation Project (GLiMP), a long-term experiment in lowland tropical forest in Panama, Central America, in which litter has been removed from or added to large-scale plots for 15 years. We assessed changes in soil and litter nutrient concentrations in response to the experimental treatments and estimated nutrient return and nutrient use efficiency to indicate changes in nutrient cycling. The soil concentrations of most nutrients increased with litter addition and declined with litter removal. Litter removal altered nitrogen, potassium, manganese and zinc cycling, demonstrating the importance of litter inputs for maintaining the availability of these elements to plants. By contrast, litter addition only altered nitrogen cycling and, despite low concentrations of available soil phosphorus, the effects of litter manipulation on phosphorus cycling were inconsistent. We discuss potential mechanisms underlying the observed changes, and we emphasise the importance of decomposition processes in the forest floor for retaining nutrient elements, which partially decouples nutrient cycling from the mineral soil. Finally, by synthesising GLiMP studies conducted during 15 years of litter manipulation, we highlight key knowledge gaps and avenues for future research into tropical forest nutrient cycling. © 2020 Elsevier Ltd
Address Teagasc, Johnstown Castle, Wexford, Ireland
Corporate Author Thesis
Publisher Academic Press Inc. Place of Publication Editor Dumbrell A.J.; Turner E.C.; Fayle T.M.
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title Advances in Ecological Research
Series Volume 62 Series Issue Edition
ISSN (up) 00652504 (Issn); 9780128211342 (Isbn) ISBN Medium
Area Expedition Conference
Notes Approved no
Call Number EcoFoG @ webmaster @ Serial 1001
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Author Cachet, N.; Hoakwie, F.; Bertani, S.; Bourdy, G.; Deharo, E.; Stien, D.; Houel, E.; Gornitzka, H.; Fillaux, J.; Chevalley, S.; Valentin, A.; Jullian, V.
Title Antimalarial Activity of Simalikalactone E, a New Quassinoid from Quassia amara L. (Simaroubaceae) Type Journal Article
Year 2009 Publication Antimicrobial Agents and Chemotherapy Abbreviated Journal Antimicrob. Agents Chemother.
Volume 53 Issue 10 Pages 4393-4398
Keywords
Abstract We report the isolation and identification of a new quassinoid named simalikalactone E (SkE), extracted from a widely used Amazonian antimalarial remedy made out of Quassia amara L. (Simaroubaceae) leaves. This new molecule inhibited the growth of Plasmodium falciparum cultured in vitro by 50%, in the concentration range from 24 to 68 nM, independently of the strain sensitivity to chloroquine. We also showed that this compound was able to decrease gametocytemia with a 50% inhibitory concentration sevenfold lower than that of primaquine. SkE was found to be less toxic than simalikalactone D (SkD), another antimalarial quassinoid from Q. amara, and its cytotoxicity on mammalian cells was dependent on the cell line, displaying a good selectivity index when tested on nontumorogenic cells. In vivo, SkE inhibited murine malaria growth of Plasmodium vinckei petteri by 50% at 1 and 0.5 mg/kg of body weight/day, by the oral or intraperitoneal routes, respectively. The contribution of quassinoids as a source of antimalarial molecules needs therefore to be reconsidered.
Address [Cachet, N.; Hoakwie, F.; Bourdy, G.; Deharo, E.; Chevalley, S.; Valentin, A.; Jullian, V.] Univ Toulouse, UPS, Lab Pharmacochim Subst Nat & Pharmacophores Redox, UMR 152, F-31062 Toulouse 9, France, Email: jullian@cict.fr
Corporate Author Thesis
Publisher AMER SOC MICROBIOLOGY Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN (up) 0066-4804 ISBN Medium
Area Expedition Conference
Notes ISI:000270020600047 Approved no
Call Number EcoFoG @ eric.marcon @ Serial 103
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Author Malé, P.-J.G.; Ferdy, J.-B.; Leroy, C.; Roux, O.; Lauth, J.; Avilez, A.; Dejean, A.; Quilichini, A.; Orivel, J.
Title Retaliation in Response to Castration Promotes a Low Level of Virulence in an Ant-Plant Mutualism Type Journal Article
Year 2014 Publication Evolutionary Biology Abbreviated Journal Evol. Biol.
Volume 41 Issue 1 Pages 22-28
Keywords Allomerus decemarticulatus; Cheater; Evolutionary conflict; Hirtella physophora; Mutualism breakdown; Overexploitation
Abstract The diversion of a host's energy by a symbiont for its own benefit is a major source of instability in horizontally-transmitted mutualisms. This instability can be counter-balanced by the host's retaliation against exploiters. Such responses are crucial to the maintenance of the relationship. We focus on this issue in an obligate ant-plant mutualism in which the ants are known to partially castrate their host plant. We studied plant responses to various levels of castration in terms of (1) global vegetative investment and (2) investment in myrmecophytic traits. Castration led to a higher plant growth rate, signalling a novel case of gigantism induced by parasitic castration. On the other hand, completely castrated plants produced smaller nesting and food resources (i.e. leaf pouches and extra floral nectaries). Since the number of worker larvae is correlated to the volume of the leaf pouches, such a decrease in the investment in myrmecophytic traits demonstrates for the first time the existence of inducible retaliation mechanisms against too virulent castrating ants. Over time, this mechanism promotes an intermediate level of castration and enhances the stability of the mutualistic relationship by providing the ants with more living space while allowing the plant to reproduce. © 2013 Springer Science+Business Media New York.
Address Laboratoire Evolution and Diversité Biologique, Université Paul Sabatier, 118 route de Narbonne, 31062 Toulouse Cedex 9, France
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN (up) 00713260 (Issn) ISBN Medium
Area Expedition Conference
Notes Export Date: 10 March 2014; Source: Scopus; Language of Original Document: English; Correspondence Address: Malé, P.-J. G.; Laboratoire Evolution and Diversité Biologique, Université Paul Sabatier, 118 route de Narbonne, 31062 Toulouse Cedex 9, France; email: pjg.male@gmail.com Approved no
Call Number EcoFoG @ webmaster @ Serial 533
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Author Courtois, E.A.; Paine, C.E.T.; Blandinieres, P.A.; Stien, D.; Bessiere, J.M.; Houel, E.; Baraloto, C.; Chave, J.
Title Diversity of the Volatile Organic Compounds Emitted by 55 Species of Tropical Trees: a Survey in French Guiana Type Journal Article
Year 2009 Publication Journal of Chemical Ecology Abbreviated Journal J. Chem. Ecol.
Volume 35 Issue 11 Pages 1349-1362
Keywords VOCs; Chemical diversity; Sesquiterpenes; Tropical; French Guiana
Abstract Volatile organic compounds (VOCs) are produced by a broad range of organisms, from bacteria to mammals, and they represent a vast chemical diversity. In plants, one of the preeminent roles of VOCs is their repellent or cytotoxic activity, which helps the plant deter its predators. Most studies on VOCs emitted by vegetative parts have been conducted in model plant species, and little is known about patterns of VOC emissions in diverse plant communities. We conducted a survey of the VOCs released immediately after mechanical damage of the bark and the leaves of 195 individual trees belonging to 55 tropical tree species in a lowland rainforest of French Guiana. We discovered a remarkably high chemical diversity, with 264 distinct VOCs and a mean of 37 compounds per species. Two monoterpenes (alpha-pinene and limonene) and two sesquiterpenes (beta-caryophyllene and alpha-copaene), which are known to have cytotoxic and deterrent effects, were the most frequent compounds in the sampled species. As has been established for floral scents, the blend of VOCs is largely species-specific and could be used to discriminate among 43 of the 55 sampled species. The species with the most diverse blends were found in the Sapindales, Laurales, and Magnoliales, indicating that VOC diversity is not uniformly distributed among tropical species. Interspecific variation in chemical diversity was caused mostly by variation in sesquiterpenes. This study emphasizes three aspects of VOC emission by tropical tree species: the species-specificity of the mixtures, the importance of sesquiterpenes, and the wide-ranging complexity of the mixtures.
Address [Courtois, Elodie A.; Blandinieres, Pierre-Alain; Stien, Didier; Houel, Emeline] CNRS, UMR Ecofog, F-97337 Cayenne, France, Email: courtois@cict.fr
Corporate Author Thesis
Publisher SPRINGER Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN (up) 0098-0331 ISBN Medium
Area Expedition Conference
Notes ISI:000273086100009 Approved no
Call Number EcoFoG @ eric.marcon @ Serial 73
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Author Roux, O.; Martin, J.M.; Ghomsi, N.T.; Dejean, A.
Title A Non-lethal Water-based Removal-reapplication Technique for Behavioral Analysis of Cuticular Compounds of Ants Type Journal Article
Year 2009 Publication Journal of Chemical Ecology Abbreviated Journal J. Chem. Ecol.
Volume 35 Issue 8 Pages 904-912
Keywords Ants; Behavioral assay; Behavioral ecology; Camponotus blandus; Chemical composition; Chemical ecology; Cuticular hydrocarbons; Gas chromatography-mass spectrometry; Live dummies; Solenopsis saevissima; Methods
Abstract Interspecific relationships among insects are often mediated by chemical cues, including non-volatile cuticular compounds. Most of these compounds are hydrocarbons that necessitate the use of solvents for their extraction, identification, and manipulation during behavioral assays. The toxicity of these solvents often precludes the removal and reapplication of hydrocarbons from and to live insects. As a consequence, dummies often are used in behavioral assays, but their passivity can bias the behavior of the responding insects. To overcome these limitations, we propose a method where cuticular compounds are extracted from live ants by placing them into glass vials half-filled with tepid water (ca. 34A degrees C) and vigorously shaking the vials to form an emulsion whose supernatant can be analyzed and/or reapplied to other ants. We demonstrate that cuticular compounds can be extracted from workers of the red fire ant, Solenopsis saevissima, and reapplied to the cuticle of workers from a sympatric species, Camponotus blandus (both Hymenoptera: Formicidae), while keeping the ants alive. Gas chromatographic-mass spectrometric analysis and behavioral assays were used to confirm the successful transfer of the behaviorally active compounds.
Address [Roux, Olivier; Martin, Jean-Michel; Dejean, Alain] Ecol Forets Guyane, CNRS, UMR 8172, F-97379 Kourou, France, Email: oroux@cict.fr
Corporate Author Thesis
Publisher SPRINGER Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN (up) 0098-0331 ISBN Medium
Area Expedition Conference
Notes ISI:000269954400006 Approved no
Call Number EcoFoG @ eric.marcon @ Serial 104
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Author Maia, A.C.D.; Dötterl, S.; Kaiser, R.; Silberbauer-Gottsberger, I.; Teichert, H.; Gibernau, M.; do Amaral Ferraz Navarro, D.M.; Schlindwein, C.; Gottsberger, G.
Title The Key Role of 4-methyl-5-vinylthiazole in the Attraction of Scarab Beetle Pollinators: A Unique Olfactory Floral Signal Shared by Annonaceae and Araceae Type Journal Article
Year 2012 Publication Journal of Chemical Ecology Abbreviated Journal J. Chem. Ecol.
Volume 38 Issue 9 Pages 1072-1080
Keywords Beetle pollination; Floral scent; Gas chromatography-mass spectrometry (GC-MS); Olfactory-mediated attraction
Abstract Cyclocephaline scarabs are specialised scent-driven pollinators, implicated with the reproductive success of several Neotropical plant taxa. Night-blooming flowers pollinated by these beetles are thermogenic and release intense fragrances synchronized to pollinator activity. However, data on floral scent composition within such mutualistic interactions are scarce, and the identity of behaviorally active compounds involved is largely unknown. We performed GC-MS analyses of floral scents of four species of Annona (magnoliids, Annonaceae) and Caladium bicolor (monocots, Araceae), and demonstrated the chemical basis for the attraction of their effective pollinators. 4-Methyl-5-vinylthiazole, a nitrogen and sulphur-containing heterocyclic compound previously unreported in flowers, was found as a prominent constituent in all studied species. Field biotests confirmed that it is highly attractive to both male and female beetles of three species of the genus Cyclocephala, pollinators of the studied plant taxa. The origin of 4-methyl-5-vinylthiazole in plants might be associated with the metabolism of thiamine (vitamin B1), and we hypothesize that the presence of this compound in unrelated lineages of angiosperms is either linked to selective expression of a plesiomorphic biosynthetic pathway or to parallel evolution. © 2012 Springer Science+Business Media, LLC.
Address Departamento de Botânica, Universidade Federal de Minas Gerais, Belo Horizonte 31270-901, Brazil
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN (up) 00980331 (Issn) ISBN Medium
Area Expedition Conference
Notes Export Date: 2 November 2012; Source: Scopus; Coden: Jcecd; doi: 10.1007/s10886-012-0173-z; Language of Original Document: English; Correspondence Address: Maia, A. C. D.; Departamento de Química Fundamental, Universidade Federal de Pernambuco, Recife 50740-560, Brazil; email: arturcamposmaia@yahoo.com.br Approved no
Call Number EcoFoG @ webmaster @ Serial 444
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Author Leroy, C.; Gril, E.; Si Ouali, L.; Coste, S.; Gérard, B.; Maillard, P.; Mercier, H.; Stahl, C.
Title Water and nutrient uptake capacity of leaf-absorbing trichomes vs. roots in epiphytic tank bromeliads Type Journal Article
Year 2019 Publication Environmental and Experimental Botany Abbreviated Journal Environ. Exp. Bot.
Volume 163 Issue Pages 112-123
Keywords 15 N labelling; Carbon metabolism; Nutrient uptake; Plant performance; Tank bromeliad; Water status; Aechmea
Abstract The water and nutrient uptake mechanisms used by vascular epiphytes have been the subject of a few studies. While leaf absorbing trichomes (LATs) are the main organ involved in resource uptake by bromeliads, little attention has been paid to the absorbing role of epiphytic bromeliad roots. This study investigates the water and nutrient uptake capacity of LATs vs. roots in two epiphytic tank bromeliads Aechmea aquilega and Lutheria splendens. The tank and/or the roots of bromeliads were watered, or not watered at all, in different treatments. We show that LATs and roots have different functions in resource uptake in the two species, which we mainly attributed to dissimilarities in carbon acquisition and growth traits (e.g., photosynthesis, relative growth rate, non-structural carbohydrates, malate), to water relation traits (e.g., water and osmotic potentials, relative water content, hydrenchyma thickness) and nutrient uptake (e.g., 15 N-labelling). While the roots of A. aquilega did contribute to water and nutrient uptake, the roots of L. splendens were less important than the role played by the LATs in resource uptake. We also provide evidenced for a synergistic effect of combined watering of tank and root in the Bromelioideae species. These results call for a more complex interpretation of LATs vs. roots in resource uptake in bromeliads. © 2019 Elsevier B.V.
Address INRA, UMR EcoFoG, CNRS, CIRAD, AgroParisTech, Université des Antilles, Université de Guyane, Kourou, 97310, France
Corporate Author Thesis
Publisher Elsevier B.V. Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN (up) 00988472 (Issn) ISBN Medium
Area Expedition Conference
Notes Approved no
Call Number EcoFoG @ webmaster @ Serial 871
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Author Sardans, J.; Urbina, I.; Grau, O.; Asensio, D.; Ogaya, R.; Peñuelas, J.
Title Long-term drought decreases ecosystem C and nutrient storage in a Mediterranean holm oak forest Type Journal Article
Year 2020 Publication Environmental and Experimental Botany Abbreviated Journal Environ. Exp. Bot.
Volume 177 Issue 104135 Pages
Keywords Aridity; Carbon stocks; Climate change; Nitrogen; Phosphorus; Potassium; Stoichiometry; carbon sequestration; deciduous forest; drought; experimental study; forest soil; long-term change; Mediterranean environment; net ecosystem exchange; nutrient cycling; shrub; stoichiometry; Mediterranean Sea; Phillyrea latifolia
Abstract Aridity has increased in recent decades in the Mediterranean Basin and is projected to continue to increase in the coming decades. We studied the consequences of drought on the concentrations, stoichiometries and stocks of carbon (C), nitrogen (N), phosphorus (P) and potassium (K) in leaves, foliar litter of a three dominant woody species and soil of a Mediterranean montane holm oak forest where soil-water content was experimentally reduced (15 % lower than the control plots) for 15 years. Nitrogen stocks were lower in the drought plots than in the control plots (8.81 ± 1.01 kg ha−1 in the forest canopy and 856 ± 120 kg ha−1 in the 0−15 cm soil layer), thus representing 7 and 18 % lower N stocks in the canopy and soil respectively. δ15N was consistently higher under drought conditions in all samples, indicating a general loss of N. Foliar C and K stocks were also lower but to a lesser extent than N. Decreases in biomass and C and N stocks due to drought were smallest for the most dominant tall shrub, Phillyrea latifolia, so our results suggest a lower capacity of this forest to store C and nutrients but also substantial resulting changes in forest structure with increasing drought. © 2020 Elsevier B.V.
Address Cirad, UMR EcoFoG (AgroParisTech, CNRS, Inra, Univ Antilles, Univ Guyane), Campus Agronomique, Kourou, 97310, French Guiana
Corporate Author Thesis
Publisher Elsevier B.V. Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN (up) 00988472 (Issn) ISBN Medium
Area Expedition Conference
Notes Approved no
Call Number EcoFoG @ webmaster @ Serial 954
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Author Millet, J.; Pascal, J.P.; Kiet, L.C.
Title Effects of Disturbance Over 60 Years on a Lowland Forest in Southern Vietnam Type Journal Article
Year 2010 Publication Journal of Tropical Forest Science Abbreviated Journal J. Trop. For. Sci.
Volume 22 Issue 3 Pages 237-246
Keywords Lowland tropical forest; disturbance impact; floristic composition; forest structure; Tan Phu forest
Abstract MILLET J, PASCAL JP & MET LC. 2010. Effects of disturbance over 60 years on a lowland forest in southern Vietnam. Tropical lowland forests are some of the most threatened in the world and this is particularly the case in Vietnam. This study aimed to identify changes in species composition and forest structure in the Tan Phu lowland forest resulting from disturbance over a 60 year period. Analysis of forest composition and structure rely on data from 25 plots of 0.5-ha size established in a lowland secondary forest. The five forest stands described differed greatly from the three forest stand types described in 1943. Some long-lived shade-tolerant species had been replaced by pioneer species, such as Cratoxylon formosum and Shorea roxburghii. In addition to altering composition, forest disturbances had resulted in large changes in forest structure. While in the past, forest stands had a large number of exploitable trees, current forest stands have few trees in the diameter class > 50 cm and sometimes no trees in the diameter class > 80 cm. This paper provides notable results on forest tree ecology, forest dynamics and on the state of secondary forests in Vietnam. This is particularly important as future goods and services will increasingly have to come from such forests.
Address [Millet, J.] Univ Lyon 1, F-69622 Villeurbanne, France, Email: jerome.millet@ird.if
Corporate Author Thesis
Publisher FOREST RESEARCH INST MALAYSIA Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN (up) 0128-1283 ISBN Medium
Area Expedition Conference
Notes ISI:000280653200003 Approved no
Call Number EcoFoG @ webmaster @ Serial 283
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