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Author |
Vedel, V.; Scotti, I. |
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Title |
Promoting the promoter |
Type |
Journal Article |
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Year |
2011 |
Publication |
Plant Science |
Abbreviated Journal |
Plant Sci. |
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Volume |
180 |
Issue |
2 |
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182-189 |
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cis-Regulation; Evolutionary and developmental biology; Integrative evolution; Plant development; Population genetics; Transcription |
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Abstract |
Recent evolutionary studies clearly indicate that evolution is mainly driven by changes in the complex mechanisms of gene regulation and not solely by polymorphism in protein-encoding genes themselves. After a short description of the cis-regulatory mechanism, we intend in this review to argue that by applying newly available technologies and by merging research areas such as evolutionary and developmental biology, population genetics, ecology and molecular cell biology it is now possible to study evolution in an integrative way. We contend that, by analysing the effects of promoter sequence variation on phenotypic diversity in natural populations, we will soon be able to break the barrier between the study of extant genetic variability and the study of major developmental changes. This will lead to an integrative view of evolution at different scales. Because of their sessile nature and their continuous development, plants must permanently regulate their gene expression to react to their environment, and can, therefore, be considered as a remarkable model for these types of studies. (C) 2010 Elsevier Ireland Ltd. All rights reserved. |
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[Vedel, Vincent; Scotti, Ivan] INRA, UMR ECOFOG, Kourou 97387, French Guiana, Email: vincent.vedel@ecofog.gf |
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ELSEVIER IRELAND LTD |
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0168-9452 |
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ISI:000286562200002 |
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EcoFoG @ eric.marcon @ |
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291 |
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Corbara, B.; Servigne, P.; Dejean, A.; Carpenter, J.M.; Orivel, J. |
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Title |
A mimetic nesting association between a timid social wasp and an aggressive arboreal ant |
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Journal Article |
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Year |
2018 |
Publication |
Comptes Rendus Biologies |
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341 |
Issue |
3 |
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182-188 |
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Ant-wasp interactions; ; ; Mimicry; Nest site selection; Relations guêpes-fourmis; ; ; Mimétisme; Sélection du site de nidification |
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Abstract |
In French Guiana, the arboreal nests of the swarm-founding social wasp Protopolybia emortualis (Polistinae) are generally found near those of the arboreal dolichoderine ant Dolichoderus bidens. These wasp nests are typically protected by an envelope, which in turn is covered by an additional carton ‘shelter’ with structure resembling the D. bidens nests. A few wasps constantly guard their nest to keep D. bidens workers from approaching. When alarmed by a strong disturbance, the ants invade the host tree foliage whereas the wasps retreat into their nest. Notably, there is no chemical convergence in the cuticular profiles of the wasps and ants sharing a tree. The aggressiveness of D. bidens likely protects the wasps from army ant raids, but the ants do not benefit from the presence of the wasps; therefore, this relationship corresponds to a kind of commensalism. Résumé En Guyane française, les nids de la guêpe Protopolybia emortualis (Polistinae) se trouvent généralement à proximité de ceux de la fourmi arboricole Dolichoderus bidens (Dolichoderinae). Ces nids de guêpes sont typiquement protégés par une enveloppe de carton, elle-même recouverte d’une autre enveloppe formant un abri qui ressemble aux nids de carton de D. bidens. Quelques guêpes gardent leur nid en permanence afin de tenir à distance les ouvrières D. bidens. Alarmées par une forte perturbation, les fourmis envahissent tout le feuillage de leur arbre support alors que les guêpes se réfugient dans leur nid. Il n’y a pas de convergence chimique entre les profils cuticulaires des guêpes et ceux des fourmis associées. Il est très probable que les P. emortualis bénéficient d’une protection contre les fourmis légionnaires grâce à l’agressivité des D. bidens, mais il n’y a pas réciprocité, de sorte que cette relation correspond à une forme de commensalisme. |
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1631-0691 |
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EcoFoG @ webmaster @ |
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825 |
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Castro, H.; Fortunel, C.; Freitas, H. |
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Title |
Effects of land abandonment on plant litter decomposition in a Montado system: relation to litter chemistry and community functional parameters |
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Journal Article |
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Year |
2010 |
Publication |
Plant and Soil |
Abbreviated Journal |
Plant Soil |
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Volume |
333 |
Issue |
1-2 |
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181-190 |
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Ecosystem processes; Land use change; Leaf dry matter content; Life form; Litter quality; Mediterranean |
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Changes in land use and subsequent shifts in vegetation can influence decomposition through changes in litter quality (chemistry and structure) and alterations of soil temperature and moisture. Our aim was to study the effects of land abandonment on litter decomposition in a Mediterranean area of Montado, South Portugal. We tested the hypothesis that decomposition tends to slow down with abandonment, as woody species, richer in lignified structures, replace herbaceous species. We assessed the decomposition of community litter in situ using litterbag technique. To test the influence of local conditions, we simultaneously incubated a standard litter in situ. Our results showed that the shift from herbaceous to shrub-dominated communities lead to decreased decomposition rates. Changes in litter decomposition were primarily driven by changes in litter quality, even though the uneven pattern of litter mass loss over the experiment might reveal an effect from possible differences in microclimate. Shrub litter had higher nutrient content than herbaceous litter, which seemed to favour higher initial decomposition rates, but lower decomposition rate in the longer term. Shrubs also contribute to woody litter, richer in lignin, and secondary compounds that retard decomposition, and may play a role in increasing pools of slowly decomposing organic matter. |
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[Castro, Helena; Freitas, Helena] Univ Coimbra, Dept Life Sci, Ctr Funct Ecol, P-3001401 Coimbra, Portugal, Email: hecastro@ci.uc.pt |
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SPRINGER |
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0032-079X |
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ISI:000280089400015 |
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EcoFoG @ eric.marcon @ |
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49 |
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Latouche-Hallé, C.; Ramboer, A.; Bandou, E.; Caron, H.; Kremer, A. |
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Nuclear and chloroplast genetic structure indicate fine-scale spatial dynamics in a neotropical tree population |
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Journal Article |
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Year |
2003 |
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Heredity |
Abbreviated Journal |
Heredity |
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91 |
Issue |
2 |
Pages |
181-190 |
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Dicorynia guianensis; Gene flow; Genetic differentiation; Microsatellites; Spatial analysis; Tropical tree; gene flow; genetic structure; population genetics; spatial analysis; tree; tropical forest; Cell Nucleus; Chloroplasts; Cohort Studies; DNA, Plant; French Guiana; Genetic Markers; Pollen; Population Dynamics; Seeds; Trees; Variation (Genetics); French Guiana; Dicorynia guianensis; Embryophyta |
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Dicorynia guianensis is a canopy tree, endemic to the tropical rain forest of French Guiana. We compared generational and spatial genetic structure for maternally and biparentally inherited markers in two cohorts (adult and seedling) in order to infer processes shaping the distribution of genetic diversity. The study was conducted on a 40 ha study plot located at Paracou near Kourou, where 172 adults trees and 375 saplings were sampled. Aggregation of trees was therefore suggested at different distances, ranging from 100 to 400 m. There was a strong link between demographic and genetic spatial structures at small distances (less than 100 m) that is likely to be the consequence of restricted seed dispersal. Genetic differentiation was more pronounced between spatial aggregates than between cohorts. Despite the spatial differentiation, the species was able to maintain high levels of diversity for maternal genomes, suggesting rapid turnover of aggregates. Spatial autocorrelation was larger for chloroplast than nuclear markers indicating a strong asymmetry between pollen and seed flow. Fixation indices indicated a lower heterozygote deficiency for the adults, maybe because of gradual elimination of selfed trees. Genetic relatedness at lower distances was higher in adult trees than in saplings, as a result of generation overlapping in the adult cohort. Overall, our results confirm earlier biological knowledge about the dispersion mechanisms of the species, and lead to an enhanced role of spatial processes in the dynamics of genetic diversity of D. guianensis. |
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INRA Lab. Genet. Arbres Forestiers, BP45, 33611 Gazinet Cedex, France |
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0018067x (Issn) |
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Cited By (since 1996): 34; Export Date: 22 October 2011; Source: Scopus; Coden: Hdtya; doi: 10.1038/sj.hdy.6800296; PubMed ID: 12886285; Language of Original Document: English; Correspondence Address: Caron, H.; INRA Lab. Genet. Arbres Forestiers, BP45, 33611 Gazinet Cedex, France; email: caron@pierroton.inra.fr; Chemicals/CAS: DNA, Plant; Genetic Markers |
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EcoFoG @ webmaster @ |
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358 |
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Quilichini, A.; Macquart, D.; Barabe, D.; Albre, J.; Gibernau, M. |
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Title |
Reproduction of the West Mediterranean endemic Arum pictum (Araceae) on Corsica |
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Journal Article |
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Year |
2010 |
Publication |
Plant Systematics and Evolution |
Abbreviated Journal |
Plant Syst. Evol. |
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Volume |
287 |
Issue |
3-4 |
Pages |
179-187 |
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Floral volatiles; Ocimene; Insect pollination; Reproductive success; Sphaeroceridae; Thermogenesis |
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Pollination in the genus Arum appears to be in general a complex deceptive pollination process. The genus Arum is composed of 28 species, all belonging to the subgenus Arum, except A. pictum, the only species of the subgenus Gymnomesium, which is basal and sister to all other Arum species. The aim of this paper is to document the pollination ecology of the insular Arum pictum, the only Arum species to flower in autumn, on the island of Corsica (France). The anthesis cycle of A. pictum occurs during the day, attracting sphaerocerid flies and staphylinid beetles early in the morning and late in the afternoon of the first day. The pollen is released from the anthers early in the morning of the second day before the departure of the insects. Its thermogenic cycle matches the anthesis cycle with an original and unique, bimodal temperature pattern of the appendix (morning and afternoon), contrary to the unimodal pattern found in all other studied Arum species. Data from reproductive success and seed sets suggest that sexual reproduction in this species is limited by pollen (e.g. attracting lured insects) rather than by resources. The biology of this Western Mediterranean species appears to be different from other Western European Arum and close to some Eastern Mediterranean species. Further studies are needed to establish whether Arum pictum represents some ancestral stage or whether its peculiar biological traits are adapted to its insular distribution. |
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[Quilichini, Angelique; Gibernau, Marc] CNRS, UMR 8172, Ecole Forets Guyane, F-97387 Kourou, France, Email: marc.gibernau@ecofog.gf |
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SPRINGER WIEN |
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0378-2697 |
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ISI:000279479800008 |
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no |
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EcoFoG @ eric.marcon @ |
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51 |
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Sierra, J.; Daudin, D.; Domenach, A.M.; Nygren, P.; Desfontaines, L. |
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Nitrogen transfer from a legume tree to the associated grass estimated by the isotopic signature of tree root exudates: A comparison of the N-15 leaf feeding and natural N-15 abundance methods |
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Journal Article |
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2007 |
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European Journal of Agronomy |
Abbreviated Journal |
Eur. J. Agron. |
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27 |
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2-4 |
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178-186 |
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agroforestry; box model; gliricidia sepium; N-15 fractionation; root turnover; tree pruning |
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Nitrogen (N) transfer from legume trees to associated crops is a key factor for the N economy of low-input agroforestry systems. In this work, we presented a new approach to estimate N transfer based on the N-15 content of root exudates and N released by root turnover of the donor plant (Gliricidia sepium) and the temporal change of the N-15 content of the receiver plant (Dichanthium aristatum). The study was carried out in greenhouse using two isotopic methods: N-15 leaf feeding (LF) and the natural N-15 abundance (NA). Measurements of exudate N-15 were made at several dates before and after tree pruning. A time-dependent box model was devised to quantify N transfer in time and to make comparisons between the isotopic methods. In NA, although tree roots and exudates presented a similar N-15 signature before tree pruning, exudates were strongly depleted in N-15 after pruning. In LF, exudates were always depleted in N-15 in relation to tree roots. Hence, the current assumption used in N transfer studies concerning the equal N-15/N-14 distribution in tissues of the donor plant and in its excreted N was not confirmed in our study. Before pruning, N transfer functioned as a two-N-source system (soil N and exudates N) and both isotopic methods provided similar estimates: 11-12% for LF and 10-15% for NA. Calculations per-formed with the model indicated that N transfer occurred with small or nil fractionation of N-15 in exudates. After pruning, there was a third N source associated with N released from tree root turnover. During this period, the isotopic signature of the receiver plant showed a transient state due to the progressive decrease of N-15 content of that N source. The amount of N derived from the tree represented 65% of the total N content of the. grass at the end of the experiments. (c) 2007 Elsevier B.V. All rights reserved. |
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INRA, Unite Agropedioclimat, UR135, Petit Bourg 97170, Guadeloupe, Email: jorge.sierra@antilles.inra.fr |
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ELSEVIER SCIENCE BV |
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1161-0301 |
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ISI:000249798900003 |
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EcoFoG @ eric.marcon @ |
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157 |
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Tindo, M.; Mbenoun Masse, P.S.; Kenne, M.; Mony, R.; Orivel, J.; Doumtsop Fotio, A.; Fotso Kuaté, A.; Djiéto-Lordon, C.; Fomena, A.; Estoup, A.; Dejean, A.; Foucaud, J. |
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Current distribution and population dynamics of the little fire ant supercolony in cameroon |
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Journal Article |
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2012 |
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Insectes Sociaux |
Abbreviated Journal |
Insectes Sociaux |
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59 |
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2 |
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175-182 |
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Auropunctata; Dispersion; Invasive ants; Reproduction strategy; Unicoloniality; Wasmannia |
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The little fire ant, Wasmannia auropunctata, is native to Central America, but has been introduced into many parts of the world. We examined the current distribution of W. auropunctata in Cameroon, tested for aggression between workers from different parts of the country, and examined the genotypes of workers, queens, and males to evaluate the mating system. We found W. auropunctata at 36 sites in three provinces (Centre, East, and South). We found W. auropunctata only in human-disturbed habitats. Its spread appears to be primarily human mediated. Aggressive behaviour was almost non-existent between workers from different sites, indicating that there is only one supercolony in Cameroon. Our genetic analysis found that only one male/female pair of clones was introduced into Cameroon, probably from Gabon. No new male clonal lineage was identified, whereas new sexually derived female clonal lineages were noted. Apart from the genotype of the founding queen, which was well distributed but generally not dominant, a new clonal queen genotype emerged and was both omnipresent and dominant at most sites. These results may be useful in the development of management strategies. © International Union for the Study of Social Insects (IUSSI) 2011. |
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Laboratoire Evolution Genome Speciation, Centre National de la Recherche Scientifique, Avenue de la Terrasse, F 91198 Gif sur Yvette, France |
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00201812 (Issn) |
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Export Date: 24 April 2012; Source: Scopus; Coden: Insoa; doi: 10.1007/s00040-011-0202-x; Language of Original Document: English; Correspondence Address: Tindo, M.; Département de Biologie des Organismes Animaux, Faculté des Sciences, Université de Douala, BP 24157 Douala, Cameroon; email: tindodouala@yahoo.com |
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EcoFoG @ webmaster @ |
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392 |
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Molto, Q.; Rossi, V.; Blanc, L. |
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Error propagation in biomass estimation in tropical forests |
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Journal Article |
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2013 |
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Methods in Ecology and Evolution |
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4 |
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2 |
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175-183 |
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Bayesian framework; Modelling; Redd; Uncertainty propagation |
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Reliable above-ground biomass (AGB) estimates are required for studies of carbon fluxes and stocks. However, there is a huge lack of knowledge concerning the precision of AGB estimates and the sources of this uncertainty. At the tree level, the tree height is predicted using the tree diameter at breast height (DBH) and a height sub-model. The wood-specific gravity (WSG) is predicted with taxonomic information and a WSG sub-model. The tree mass is predicted using the predicted height, the predicted WSG and the biomass sub-model. Our models were inferred with Bayesian methods and the uncertainty propagated with a Monte Carlo scheme. The uncertainties in the predictions of tree height, tree WSG and tree mass were neglected sequentially to quantify their contributions to the uncertainty in AGB. The study was conducted in French Guiana where long-term research on forest ecosystems provided an outstanding data collection on tree height, tree dynamics, tree mass and species WSG. We found that the uncertainty in the AGB estimates was found to derive primarily from the biomass sub-model. The models used to predict the tree heights and WSG contributed negligible uncertainty to the final estimate. Considering our results, a poor knowledge of WSG and the height-diameter relationship does not increase the uncertainty in AGB estimates. However, it could lead to bias. Therefore, models and databases should be used with care. This study provides a methodological framework that can be broadly used by foresters and plant ecologist. It provides the accurate confidence intervals associated with forest AGB estimates made from inventory data. When estimating region-scale AGB values (through spatial interpolation, spatial modelling or satellite signal treatment), the uncertainty of the forest AGB value in the reference forest plots has to be taken in account. We believe that in the light of the Reducing Emissions from Deforestation and Degradation debate, our method is a crucial step in monitoring carbon stocks and their spatio-temporal evolution. © 2012 The Authors. Methods in Ecology and Evolution © 2012 British Ecological Society. |
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CIRAD, UMR 'Ecologie des Forêts de Guyane', Kourou Cedex, 97 379, France |
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Export Date: 21 February 2013; Source: Scopus |
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EcoFoG @ webmaster @ |
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470 |
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Van Langenhove, L.; Verryckt, L.T.; Bréchet, L.; Courtois, E.A.; Stahl, C.; Hofhansl, F.; Bauters, M.; Sardans, J.; Boeckx, P.; Fransen, E.; Peñuelas, J.; Janssens, I.A. |
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Title |
Atmospheric deposition of elements and its relevance for nutrient budgets of tropical forests |
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Journal Article |
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2020 |
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Biogeochemistry |
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Biogeochemistry |
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149 |
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2 |
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175-193 |
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Litterfall; Nitrogen; Nutrient cycling; Phosphorus; Potassium; Throughfall; atmospheric deposition; canopy exchange; field method; forest floor; leaching; litterfall; nutrient cycling; phosphorus; potassium; precipitation (climatology); rainforest; tropical forest; French Guiana |
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Atmospheric deposition is an important component of the nutrient cycles of terrestrial ecosystems, but field measurements are especially scarce in tropical regions. In this study we analysed 15 months of precipitation chemistry collected in an old growth tropical forest located in French Guiana. We measured nutrient inputs via bulk precipitation and throughfall and used the canopy budget model to estimate nutrient fluxes via canopy exchange and dry deposition. Based on this method we quantified net fluxes of macronutrients and compared their contribution to internal cycling rates via litterfall. Our results suggest that while atmospheric deposition of nitrogen was relatively high (13 kg ha−1 year−1), and mainly in organic forms, the N inputs via litterfall were an order of magnitude higher. In contrast to nitrogen, we found that atmospheric deposition of phosphorus (0.5 kg ha−1 year−1) supplied up to one third of the annual litterfall input to the forest floor. Most strikingly, combined annual inputs of potassium via atmospheric deposition (14 kg ha−1 year−1) and canopy leaching (22 kg ha−1 year−1) were three times larger than internal nutrient recycling via litterfall (11 kg ha−1 year−1). We conclude that atmospheric deposition of phosphorus and especially potassium may play an important role in sustaining the productivity of this old-growth tropical rainforest. © 2020, Springer Nature Switzerland AG. |
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StatUa Center for Statistics, University of Antwerp, Prinsstraat 13, Antwerp, 2000, Belgium |
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Springer |
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01682563 (Issn) |
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EcoFoG @ webmaster @ |
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964 |
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Author |
Sayer, E.J.; Rodtassana, C.; Sheldrake, M.; Bréchet, L.M.; Ashford, O.S.; Lopez-Sangil, L.; Kerdraon-Byrne, D.; Castro, B.; Turner, B.L.; Wright, S.J.; Tanner, E.V.J. |
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Title |
Revisiting nutrient cycling by litterfall—Insights from 15 years of litter manipulation in old-growth lowland tropical forest |
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Journal Article |
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Year |
2020 |
Publication |
Advances in Ecological Researc |
Abbreviated Journal |
Adv. Ecol. Res. |
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Volume |
62 |
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Pages |
173-223 |
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Keywords |
Forest floor; Litter addition; Litter removal; Litterfall; Nutrient cycling; Nutrient use efficiency; Soil fertility; Trace elements; Tropical lowland forest |
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Abstract |
The crucial role of tropical forests in the global carbon balance is underpinned by their extraordinarily high biomass and productivity, even though the majority of tropical forests grow on nutrient-poor soils. Nutrient cycling by litterfall has long been considered essential for maintaining high primary productivity in lowland tropical forests but few studies have tested this assumption experimentally. We review and synthesise findings from the Gigante Litter Manipulation Project (GLiMP), a long-term experiment in lowland tropical forest in Panama, Central America, in which litter has been removed from or added to large-scale plots for 15 years. We assessed changes in soil and litter nutrient concentrations in response to the experimental treatments and estimated nutrient return and nutrient use efficiency to indicate changes in nutrient cycling. The soil concentrations of most nutrients increased with litter addition and declined with litter removal. Litter removal altered nitrogen, potassium, manganese and zinc cycling, demonstrating the importance of litter inputs for maintaining the availability of these elements to plants. By contrast, litter addition only altered nitrogen cycling and, despite low concentrations of available soil phosphorus, the effects of litter manipulation on phosphorus cycling were inconsistent. We discuss potential mechanisms underlying the observed changes, and we emphasise the importance of decomposition processes in the forest floor for retaining nutrient elements, which partially decouples nutrient cycling from the mineral soil. Finally, by synthesising GLiMP studies conducted during 15 years of litter manipulation, we highlight key knowledge gaps and avenues for future research into tropical forest nutrient cycling. © 2020 Elsevier Ltd |
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Address |
Teagasc, Johnstown Castle, Wexford, Ireland |
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Publisher |
Academic Press Inc. |
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Editor |
Dumbrell A.J.; Turner E.C.; Fayle T.M. |
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Abbreviated Series Title |
Advances in Ecological Research |
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Series Volume |
62 |
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ISSN |
00652504 (Issn); 9780128211342 (Isbn) |
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EcoFoG @ webmaster @ |
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1001 |
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