| Records |
| Author |
Vedel, V.; Cerdan, A.; Martinez, Q.; Baraloto, C.; Petitclerc, F.; Orivel, J.; Fortunel, C. |
| Title |
Day-time vs. Night-time sampling does not affect estimates of spider diversity across a land use gradient in the Neotropics |
Type |
Journal Article |
| Year |
2015 |
Publication |
Journal of Arachnology |
Abbreviated Journal |
Journal of Arachnology |
| Volume |
43 |
Issue |
3 |
Pages  |
413-416 |
| Keywords |
Araneae; community; day; night; sampling protocol |
| Abstract |
To obtain a reliable description of spider communities, robust sampling protocols are crucial. However, it remains unclear if descriptions of spider communities in tropical habitats require both day and night sampling. Here we tested whether sampling both day and night in high and low vegetation strata would lead to better diversity estimates of spider communities than sampling at only one period of the day. We determined spider taxonomic diversity in a network of 12 plots in French Guiana along a vegetation gradient. We found high alpha diversity of spiders as expected for a tropical area at every site. We showed strong differences in spider alpha and beta diversity between high and low vegetation strata, while they were similar between day and night sampling. Our results suggest that collecting spiders at only one period is sufficient to describe the diversity of spider communities across land use types in the neotropics. © The American Arachnological Society. |
| Address |
Department of Biology, University of Maryland, College Park, MD, United States |
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Export Date: 10 December 2015 |
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no |
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EcoFoG @ webmaster @ |
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641 |
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Vanbellingen, Q.P.; Fu, T.; Bich, C.; Amusant, N.; Stien, D.; Della-Negra, S.; Touboul, D.; Brunelle, A. |
| Title |
Mapping Dicorynia guianensis Amsh. wood constituents by submicron resolution cluster-TOF-SIMS imaging |
Type |
Journal Article |
| Year |
2016 |
Publication |
Journal of Mass Spectrometry |
Abbreviated Journal |
Journal of Mass Spectrometry |
| Volume |
51 |
Issue |
6 |
Pages |
412-423 |
| Keywords |
Dicorynia guianensis; heartwood formation; mass spectrometry imaging; Tof-Sims; tropical wood; tryptamine |
| Abstract |
The preparation of tropical wood surface sections for time-of-flight secondary ion mass spectrometry imaging is described, and the use of delayed extraction of secondary ions and its interest for the analysis of vegetal surface are shown. The method has been applied to the study by time-of-flight secondary ion mass spectrometry imaging with a resolution of less than one micron of a tropical wood species, Dicorynia guianensis, which is one of the most exploited wood in French Guiana for its durable heartwood. The heartwood of this species exhibits an economical importance, but its production is not controlled in forestry. Results show an increase of tryptamine from the transition zone and a concomitant decrease of inorganic ions and starch fragment ions. These experiments lead to a better understanding of the heartwood formation and the origin of the natural durability of D. guianensis. Copyright © 2016 John Wiley & Sons, Ltd. Copyright © 2016 John Wiley & Sons, Ltd. |
| Address |
Department of Chemistry and Biochemistry, Florida International University, Miami, FL, United States |
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Export Date: 28 June 2016 |
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no |
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EcoFoG @ webmaster @ |
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684 |
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Öpik, M.; Zobel, M.; Cantero, J.J.; Davison, J.; Facelli, J.M.; Hiiesalu, I.; Jairus, T.; Kalwij, J.M.; Koorem, K.; Leal, M.E.; Liira, J.; Metsis, M.; Neshataeva, V.; Paal, J.; Phosri, C.; Põlme, S.; Reier, Ü.; Saks, Ü.; Schimann, H.; Thiéry, O.; Vasar, M.; Moora, M. |
| Title |
Global sampling of plant roots expands the described molecular diversity of arbuscular mycorrhizal fungi |
Type |
Journal Article |
| Year |
2013 |
Publication |
Mycorrhiza |
Abbreviated Journal |
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| Volume |
23 |
Issue |
5 |
Pages |
411-430 |
| Keywords |
454-sequencing; Biogeography; Database; Diversity; Fungal macroecology; Glomeromycota |
| Abstract |
We aimed to enhance understanding of the molecular diversity of arbuscular mycorrhizal fungi (AMF) by building a new global dataset targeting previously unstudied geographical areas. In total, we sampled 96 plant species from 25 sites that encompassed all continents except Antarctica. AMF in plant roots were detected by sequencing the nuclear SSU rRNA gene fragment using either cloning followed by Sanger sequencing or 454-sequencing. A total of 204 AMF phylogroups (virtual taxa, VT) were recorded, increasing the described number of Glomeromycota VT from 308 to 341 globally. Novel VT were detected from 21 sites; three novel but nevertheless widespread VT (Glomus spp. MO-G52, MO-G53, MO-G57) were recorded from six continents. The largest increases in regional VT number were recorded in previously little-studied Oceania and in the boreal and polar climatic zones – this study providing the first molecular data from the latter. Ordination revealed differences in AM fungal communities between different continents and climatic zones, suggesting that both biogeographic history and environmental conditions underlie the global variation of those communities. Our results show that a considerable proportion of Glomeromycota diversity has been recorded in many regions, though further large increases in richness can be expected in remaining unstudied areas. © 2013 Springer-Verlag Berlin Heidelberg. |
| Address |
INRA-Joint Research Unit Ecology of Guiana Forests (Ecofog), campus agronomique, BP 709, 97387 Kourou cedex, French Guiana |
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Export Date: 25 June 2013; Source: Scopus |
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no |
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EcoFoG @ webmaster @ |
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493 |
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Marcon, E.; Puech, F. |
| Title |
Evaluating the geographic concentration of industries using distance-based methods |
Type |
Journal Article |
| Year |
2003 |
Publication |
Journal of Economic Geography |
Abbreviated Journal |
J. Econ. Geogr. |
| Volume |
3 |
Issue |
4 |
Pages |
409-428 |
| Keywords |
agglomeration; clustering; geographic concentration; location of firms |
| Abstract |
We propose new methods for evaluating the spatial distribution of firms. To assess whether firms are concentrated or dispersed, economists have traditionally used indices that analyse the heterogeneity of a spatial structure at a single geographic level. We introduce distance-based methods, Besag's L function (derived from Ripley's K function) and Diggle and Chetwynd's D function to describe simultaneously spatial distribution at different geographical scales. Our empirical applications consider the distribution of French manufacturing firms in the Paris area and in France generally. For some geographic levels, results show significant concentration or dispersion of firms according to their sector of activity. |
| Address |
ENGREF, Kourou 97310, French Guiana |
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OXFORD UNIV PRESS |
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1468-2702 |
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ISI:000185742500004 |
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no |
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EcoFoG @ eric.marcon @ |
Serial |
269 |
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Siebicke, L.; Steinfeld, G.; Foken, T. |
| Title |
CO2-gradient measurements using a parallel multi-analyzer setup |
Type |
Journal Article |
| Year |
2011 |
Publication |
Atmospheric Measurement Techniques |
Abbreviated Journal |
Atmos. Meas. Tech. |
| Volume |
4 |
Issue |
3 |
Pages |
409-423 |
| Keywords |
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| Abstract |
Accurate CO2 concentration gradient measurements are needed for the computation of advective flux terms, which are part of the full Net Ecosystem Exchange (NEE) budget equation. A typical draw back of current gradient measurement designs in advection research is the inadequate sampling of complex flow phenomena using too few observation points in space and time. To overcome this draw back, a new measurement design is presented which allows the parallel measurement of several sampling points at a high frequency. Due to the multi-analyzer nature of the design, inter-instrument bias becomes more of a concern compared to conventional setups. Therefore a statistical approach is presented which allows for accurate observations of concentration gradients, which are typically small in relation to analyzer accuracy, to be obtained. This bias correction approach applies a conditional, time dependent signal correction. The correction depends on a mixing index based on cross correlation analysis, which characterizes the degree of mixing of the atmosphere between individual sample points. The approach assumes statistical properties of probability density functions (pdf) of concentration differences between a sample point and the field average which are common to the pdf's from several sample points. The applicability of the assumptions made was tested by Large Eddy Simulation (LES) using the model PALM and could be verified for a test case of well mixed conditions. The study presents concentration time series before and after correction, measured at a 2 m height in the sub-canopy at the FLUXNET spruce forest site Waldstein-Weidenbrunnen (DE-Bay), analyzes the dependence of statistical parameters of pdf's from atmospheric parameters such as stratification, quantifies the errors and evaluates the performance of the bias correction approach. The improvements that are achieved by applying the bias correction approach are one order of magnitude larger than possible errors associated with it, which is a strong incentive to use the correction approach. In conclusion, the presented bias correction approach is well suited for – but not limited to – horizontal gradient measurements in a multi-analyzer setup, which would not have been reliable without this approach. Finally, possible future improvements of the bias correction approach are outlined and further fields of application indicated. |
| Address |
[Siebicke, L.; Foken, T.] Univ Bayreuth, Dept Micrometeorol, Bayreuth, Germany, Email: lukas.siebicke@ecofog.gf |
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Copernicus Gesellschaft Mbh |
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1867-1381 |
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ISI:000288911000002 |
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no |
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EcoFoG @ webmaster @ |
Serial |
303 |
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Kiaer, L.P.; Felber, F.; Flavell, A.; Guadagnuolo, R.; Guiatti, D.; Hauser, T.P.; Olivieri, A.M.; Scotti, I.; Syed, N.; Vischi, M.; van de Wiel, C.; Jorgensen, R.B. |
| Title |
Spontaneous gene flow and population structure in wild and cultivated chicory, Cichorium intybus L |
Type |
Journal Article |
| Year |
2009 |
Publication |
Genetic Resources and Crop Evolution |
Abbreviated Journal |
Genet. Resour. Crop Evol. |
| Volume |
56 |
Issue |
3 |
Pages |
405-419 |
| Keywords |
AFLP; GM co-existence; Gene dispersal; Introgression; Risk assessment; SSAP |
| Abstract |
Spontaneous gene flow between wild and cultivated chicory, Cichorium intybus L., may have implications for the genetic structure and evolution of populations and varieties. One aspect of this crop-wild gene flow is the dispersal of transgenes from genetically modified varieties, e.g. gene flow from GM chicory to natural chicory could have unwanted consequences. With the purpose to identify and quantify crop-wild gene flow in chicory, we analysed introgression in 19 wild chicory populations and 16 accessions of chicory varieties and landraces distributed across Northern, Central and Mediterranean Europe. The analysis used 281 AFLP markers and 75 SSAP markers giving a total of 356 polymorphic markers. Results from model based assignments with the program STRUCTURE indicated many incidents of recent gene flow. Gene flow was observed both between cultivars and wild populations, between landraces and wild populations, between different wild populations as well as between cultivars. Population structure visualized by distance-based clustering showed a North-South geographical structuring of the wild populations, and a general grouping of the cultivars corresponding to known origin. The results indicated, however, that the structuring between the two groups of wild and cultivated types was weak. As crop and wild recipients are genetically close and genes are transferred between the two types rather frequently, focus on mitigating crop-wild gene flow should be increased, before transgenic varieties are cultivated openly. |
| Address |
[Kiaer, L. P.; Jorgensen, R. B.] DTU, Riso Natl Lab, Biosyst Dept, DK-4000 Roskilde, Denmark, Email: rikke.bagger.jorgensen@risoe.dk |
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SPRINGER |
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Edition |
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0925-9864 |
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ISI:000264835300011 |
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no |
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EcoFoG @ eric.marcon @ |
Serial |
204 |
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Steidinger, B.S.; Crowther, T.W.; Liang, J.; Van Nuland, M.E.; Werner, G.D.A.; Reich, P.B.; Nabuurs, G.; de-Miguel, S.; Zhou, M.; Picard, N.; Herault, B.; Zhao, X.; Zhang, C.; Routh, D.; Peay, K.G.; Abegg, M.; Adou Yao, C.Y.; Alberti, G.; Almeyda Zambrano, A.; Alvarez-Davila, E.; Alvarez-Loayza, P.; Alves, L.F.; Ammer, C.; Antón-Fernández, C.; Araujo-Murakami, A.; Arroyo, L.; Avitabile, V.; Aymard, G.; Baker, T.; Bałazy, R.; Banki, O.; Barroso, J.; Bastian, M.; Bastin, J.-F.; Birigazzi, L.; Birnbaum, P.; Bitariho, R.; Boeckx, P.; Bongers, F.; Bouriaud, O.; Brancalion, P.H.S.; Brandl, S.; Brearley, F.Q.; Brienen, R.; Broadbent, E.; Bruelheide, H.; Bussotti, F.; Cazzolla Gatti, R.; Cesar, R.; Cesljar, G.; Chazdon, R.; Chen, H.Y.H.; Chisholm, C.; Cienciala, E.; Clark, C.J.; Clark, D.; Colletta, G.; Condit, R.; Coomes, D.; Cornejo Valverde, F.; Corral-Rivas, J.J.; Crim, P.; Cumming, J.; Dayanandan, S.; de Gasper, A.L.; Decuyper, M.; Derroire, G.; DeVries, B.; Djordjevic, I.; Iêda, A.; Dourdain, A.; Obiang, N.L.E.; Enquist, B.; Eyre, T.; Fandohan, A.B.; Fayle, T.M.; Feldpausch, T.R.; Finér, L.; Fischer, M.; Fletcher, C.; Fridman, J.; Frizzera, L.; Gamarra, J.G.P.; Gianelle, D.; Glick, H.B.; Harris, D.; Hector, A.; Hemp, A.; Hengeveld, G.; Herbohn, J.; Herold, M.; Hillers, A.; Honorio Coronado, E.N.; Huber, M.; Hui, C.; Cho, H.; Ibanez, T.; Jung, I.; Imai, N.; Jagodzinski, A.M.; Jaroszewicz, B.; Johannsen, V.; Joly, C.A.; Jucker, T.; Karminov, V.; Kartawinata, K.; Kearsley, E.; Kenfack, D.; Kennard, D.; Kepfer-Rojas, S.; Keppel, G.; Khan, M.L.; Killeen, T.; Kim, H.S.; Kitayama, K.; Köhl, M.; Korjus, H.; Kraxner, F.; Laarmann, D.; Lang, M.; Lewis, S.; Lu, H.; Lukina, N.; Maitner, B.; Malhi, Y.; Marcon, E.; Marimon, B.S.; Marimon-Junior, B.H.; Marshall, A.R.; Martin, E.; Martynenko, O.; Meave, J.A.; Melo-Cruz, O.; Mendoza, C.; Merow, C.; Monteagudo Mendoza, A.; Moreno, V.; Mukul, S.A.; Mundhenk, P.; Nava-Miranda, M.G.; Neill, D.; Neldner, V.; Nevenic, R.; Ngugi, M.; Niklaus, P.; Oleksyn, J.; Ontikov, P.; Ortiz-Malavasi, E.; Pan, Y.; Paquette, A.; Parada-Gutierrez, A.; Parfenova, E.; Park, M.; Parren, M.; Parthasarathy, N.; Peri, P.L.; Pfautsch, S.; Phillips, O.; Piedade, M.T.; Piotto, D.; Pitman, N.C.A.; Polo, I.; Poorter, L.; Poulsen, A.D.; Poulsen, J.R.; Pretzsch, H.; Ramirez Arevalo, F.; Restrepo-Correa, Z.; Rodeghiero, M.; Rolim, S.; Roopsind, A.; Rovero, F.; Rutishauser, E.; Saikia, P.; Saner, P.; Schall, P.; Schelhaas, M.-J.; Schepaschenko, D.; Scherer-Lorenzen, M.; Schmid, B.; Schöngart, J.; Searle, E.; Seben, V.; Serra-Diaz, J.M.; Salas-Eljatib, C.; Sheil, D.; Shvidenko, A.; Silva-Espejo, J.; Silveira, M.; Singh, J.; Sist, P.; Slik, F.; Sonké, B.; Souza, A.F.; Stereńczak, K.; Svenning, J.-C.; Svoboda, M.; Targhetta, N.; Tchebakova, N.; Steege, H.; Thomas, R.; Tikhonova, E.; Umunay, P.; Usoltsev, V.; Valladares, F.; van der Plas, F.; Van Do, T.; Vasquez Martinez, R.; Verbeeck, H.; Viana, H.; Vieira, S.; von Gadow, K.; Wang, H.-F.; Watson, J.; Westerlund, B.; Wiser, S.; Wittmann, F.; Wortel, V.; Zagt, R.; Zawila-Niedzwiecki, T.; Zhu, Z.-X.; Zo-Bi, I.C.; GFBI consortium |
| Title |
Climatic controls of decomposition drive the global biogeography of forest-tree symbioses |
Type |
Journal Article |
| Year |
2019 |
Publication |
Nature |
Abbreviated Journal |
Nature |
| Volume |
569 |
Issue |
7756 |
Pages |
404-408 |
| Keywords |
Fungi |
| Abstract |
The identity of the dominant root-associated microbial symbionts in a forest determines the ability of trees to access limiting nutrients from atmospheric or soil pools 1,2 , sequester carbon 3,4 and withstand the effects of climate change 5,6 . Characterizing the global distribution of these symbioses and identifying the factors that control this distribution are thus integral to understanding the present and future functioning of forest ecosystems. Here we generate a spatially explicit global map of the symbiotic status of forests, using a database of over 1.1 million forest inventory plots that collectively contain over 28,000 tree species. Our analyses indicate that climate variables—in particular, climatically controlled variation in the rate of decomposition—are the primary drivers of the global distribution of major symbioses. We estimate that ectomycorrhizal trees, which represent only 2% of all plant species 7 , constitute approximately 60% of tree stems on Earth. Ectomycorrhizal symbiosis dominates forests in which seasonally cold and dry climates inhibit decomposition, and is the predominant form of symbiosis at high latitudes and elevation. By contrast, arbuscular mycorrhizal trees dominate in aseasonal, warm tropical forests, and occur with ectomycorrhizal trees in temperate biomes in which seasonally warm-and-wet climates enhance decomposition. Continental transitions between forests dominated by ectomycorrhizal or arbuscular mycorrhizal trees occur relatively abruptly along climate-driven decomposition gradients; these transitions are probably caused by positive feedback effects between plants and microorganisms. Symbiotic nitrogen fixers—which are insensitive to climatic controls on decomposition (compared with mycorrhizal fungi)—are most abundant in arid biomes with alkaline soils and high maximum temperatures. The climatically driven global symbiosis gradient that we document provides a spatially explicit quantitative understanding of microbial symbioses at the global scale, and demonstrates the critical role of microbial mutualisms in shaping the distribution of plant species. © 2019, The Author(s), under exclusive licence to Springer Nature Limited. |
| Address |
Faculty of Environmental Sciences and Natural Resource Management, Norwegian University of Life Sciences, Ås, Norway |
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Nature Publishing Group |
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00280836 (Issn) |
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no |
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EcoFoG @ webmaster @ |
Serial |
872 |
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| Author |
Ruiz-Gonzalez, M.X.; Corbara, B.; Leroy, C.; Dejean, A.; Orivel, J. |
| Title |
The Weaver Wasp: Spinning Fungus into a Nest |
Type |
Journal Article |
| Year |
2010 |
Publication |
Biotropica |
Abbreviated Journal |
Biotropica |
| Volume |
42 |
Issue |
4 |
Pages |
402-404 |
| Keywords |
Allomerus decemarticulatus; French Guiana; Hirtella physophora; nest architecture; Nitela constructor; wasp biology |
| Abstract |
Wasp nests range from simple to complex structures made of paper or mud. Here, we show that a Neotropical wasp of the genus Nitela builds its nest entirely by weaving endophytic fungal hyphae and spider silk harvested from the leaves growing in the understory of the rain forest in French Guiana. |
| Address |
[Ruiz-Gonzalez, Mario X.; Orivel, Jerome] Univ Toulouse, UPS, EDB, Lab Evolut & Divers Biol, F-31062 Toulouse, France, Email: orivel@cict.fr |
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WILEY-BLACKWELL PUBLISHING, INC |
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0006-3606 |
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| Notes |
ISI:000279438900002 |
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no |
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EcoFoG @ eric.marcon @ |
Serial |
54 |
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| Author |
Derory, J.; Scotti-Saintagne, C.; Bertocchi, E.; Le Dantec, L.; Graignic, N.; Jauffres, A.; Casasoli, M.; Chancerel, E.; Bodenes, C.; Alberto, F.; Kremer, A. |
| Title |
Contrasting relations between diversity of candidate genes and variation of bud burst in natural and segregating populations of European oaks |
Type |
Journal Article |
| Year |
2010 |
Publication |
Heredity |
Abbreviated Journal |
Heredity |
| Volume |
105 |
Issue |
4 |
Pages |
401-411 |
| Keywords |
nucleotide diversity; candidate gene; QTL; Quercus petraea |
| Abstract |
Nucleotide diversity was assessed within nine candidate genes (in total 4.6 kb) for the time of bud burst in nine sessile oak (Quercus petraea) populations distributed in central and northern Europe. The sampled populations were selected on the basis of their contrasting time of bud burst observed in common garden experiments (provenance tests). The candidate genes were selected according to their expression profiles during the transition from quiescent to developing buds and/or their functional role in model plants. The overall nucleotide diversity was large (pi(tot) – 6.15 x 10(-3); pi(silent) – 11.2 x 10(-3)), but population differentiation was not larger than for microsatellites. No outlier single-nucleotide polymorphism (SNP), departing from neutral expectation, was found among the total of 125 SNPs. These results contrasted markedly with the significant associations that were observed between the candidate genes and bud burst in segregating populations. Quantitative trait loci (QTLs) for bud burst were identified for 13 year*site seasonal observations in a cloned mapping pedigree. Nineteen QTLs were detected, and QTLs located on linkage groups 2, 5 and 9 contributed repeatedly to more than 12% of the phenotypic variation of the trait. Eight genes were polymorphic in the two parents of the pedigree and could be mapped on the existing genetic map. Five of them located within the confidence intervals of QTLs for bud burst. Interestingly, four of them located within the three QTLs exhibiting the largest contributions to bud burst. Heredity (2010) 105, 401-411; doi:10.1038/hdy.2009.170; published online 9 December 2009 |
| Address |
[Derory, J.; Scotti-Saintagne, C.; Bertocchi, E.; Graignic, N.; Jauffres, A.; Casasoli, M.; Chancerel, E.; Bodenes, C.; Alberto, F.; Kremer, A.] INRA, BIOGECO UMR1202, F-33610 Cestas, France, Email: antoine.kremer@pierroton.inra.fr |
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NATURE PUBLISHING GROUP |
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0018-067X |
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ISI:000282059900010 |
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no |
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EcoFoG @ eric.marcon @ |
Serial |
41 |
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Nasr, H.; Domenach, A.M.; Ghorbel, M.H.; Benson, D.R. |
| Title |
Divergence in symbiotic interactions between same genotypic PCR-RFLP Frankia strains and different Casuarinaceae species under natural conditions |
Type |
Journal Article |
| Year |
2007 |
Publication |
Physiologia Plantarum |
Abbreviated Journal |
Physiol. Plant. |
| Volume |
130 |
Issue |
3 |
Pages |
400-408 |
| Keywords |
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| Abstract |
The symbiotic interactions between Frankia strains and their associated plants from the Casuarinaceae under controlled conditions are well documented but little is known about these interactions under natural conditions. We explored the symbiotic interactions between eight genotypically characterized Frankia strains and five Casuarinaceae species in long-term field trials. Characterization of strains was performed using the polymerase chain reaction (PCR) and restriction fragment length polymorphism (RFLP) for the nifD-nifK intergenic transcribed spacer (ITS) and 16S-23S ITS. Assessments of the symbiotic interactions were based on nodulation patterns using nodule dry weight and viability, and on actual N-2 fixation using the delta N-15 method. The PCR-RFLP patterns showed that the analyzed strains belonged to the same genotypic group (CeD group), regardless of the host species and environment of origin. The nodule viability index is introduced as a new tool to measure the viability of perennial nodules and to predict their effectiveness. The host Casuarinaceae species was a key factor influencing both the actual N-2-fixing activity of the associated Frankia strain and the viability of nodules within a location. This is the first study providing information on the symbiotic interactions between genotypically characterized Frankia strains and actinorhizal plants under natural conditions. The results revealed a way to improve a long-term management of the Casuarinaceae symbiosis. |
| Address |
Univ Connecticut, Dept Mol & Cell Biol, Storrs, CT 06279 USA, Email: david.benson@uconn.edu |
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Thesis |
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| Publisher |
BLACKWELL PUBLISHING |
Place of Publication |
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Editor |
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Summary Language |
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Original Title |
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Series Title |
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Abbreviated Series Title |
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| Series Volume |
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Series Issue |
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Edition |
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| ISSN |
0031-9317 |
ISBN |
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Medium |
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Expedition |
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Conference |
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| Notes |
ISI:000247206100010 |
Approved |
no |
| Call Number |
EcoFoG @ eric.marcon @ |
Serial |
161 |
| Permanent link to this record |
