| Records |
| Author |
Siebicke, L.; Steinfeld, G.; Foken, T. |
| Title |
CO2-gradient measurements using a parallel multi-analyzer setup |
Type |
Journal Article |
| Year |
2011 |
Publication |
Atmospheric Measurement Techniques |
Abbreviated Journal |
Atmos. Meas. Tech. |
| Volume |
4 |
Issue |
3 |
Pages  |
409-423 |
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| Abstract |
Accurate CO2 concentration gradient measurements are needed for the computation of advective flux terms, which are part of the full Net Ecosystem Exchange (NEE) budget equation. A typical draw back of current gradient measurement designs in advection research is the inadequate sampling of complex flow phenomena using too few observation points in space and time. To overcome this draw back, a new measurement design is presented which allows the parallel measurement of several sampling points at a high frequency. Due to the multi-analyzer nature of the design, inter-instrument bias becomes more of a concern compared to conventional setups. Therefore a statistical approach is presented which allows for accurate observations of concentration gradients, which are typically small in relation to analyzer accuracy, to be obtained. This bias correction approach applies a conditional, time dependent signal correction. The correction depends on a mixing index based on cross correlation analysis, which characterizes the degree of mixing of the atmosphere between individual sample points. The approach assumes statistical properties of probability density functions (pdf) of concentration differences between a sample point and the field average which are common to the pdf's from several sample points. The applicability of the assumptions made was tested by Large Eddy Simulation (LES) using the model PALM and could be verified for a test case of well mixed conditions. The study presents concentration time series before and after correction, measured at a 2 m height in the sub-canopy at the FLUXNET spruce forest site Waldstein-Weidenbrunnen (DE-Bay), analyzes the dependence of statistical parameters of pdf's from atmospheric parameters such as stratification, quantifies the errors and evaluates the performance of the bias correction approach. The improvements that are achieved by applying the bias correction approach are one order of magnitude larger than possible errors associated with it, which is a strong incentive to use the correction approach. In conclusion, the presented bias correction approach is well suited for – but not limited to – horizontal gradient measurements in a multi-analyzer setup, which would not have been reliable without this approach. Finally, possible future improvements of the bias correction approach are outlined and further fields of application indicated. |
| Address |
[Siebicke, L.; Foken, T.] Univ Bayreuth, Dept Micrometeorol, Bayreuth, Germany, Email: lukas.siebicke@ecofog.gf |
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Copernicus Gesellschaft Mbh |
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1867-1381 |
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ISI:000288911000002 |
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EcoFoG @ webmaster @ |
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303 |
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| Author |
Öpik, M.; Zobel, M.; Cantero, J.J.; Davison, J.; Facelli, J.M.; Hiiesalu, I.; Jairus, T.; Kalwij, J.M.; Koorem, K.; Leal, M.E.; Liira, J.; Metsis, M.; Neshataeva, V.; Paal, J.; Phosri, C.; Põlme, S.; Reier, Ü.; Saks, Ü.; Schimann, H.; Thiéry, O.; Vasar, M.; Moora, M. |
| Title |
Global sampling of plant roots expands the described molecular diversity of arbuscular mycorrhizal fungi |
Type |
Journal Article |
| Year |
2013 |
Publication |
Mycorrhiza |
Abbreviated Journal |
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| Volume |
23 |
Issue |
5 |
Pages |
411-430 |
| Keywords |
454-sequencing; Biogeography; Database; Diversity; Fungal macroecology; Glomeromycota |
| Abstract |
We aimed to enhance understanding of the molecular diversity of arbuscular mycorrhizal fungi (AMF) by building a new global dataset targeting previously unstudied geographical areas. In total, we sampled 96 plant species from 25 sites that encompassed all continents except Antarctica. AMF in plant roots were detected by sequencing the nuclear SSU rRNA gene fragment using either cloning followed by Sanger sequencing or 454-sequencing. A total of 204 AMF phylogroups (virtual taxa, VT) were recorded, increasing the described number of Glomeromycota VT from 308 to 341 globally. Novel VT were detected from 21 sites; three novel but nevertheless widespread VT (Glomus spp. MO-G52, MO-G53, MO-G57) were recorded from six continents. The largest increases in regional VT number were recorded in previously little-studied Oceania and in the boreal and polar climatic zones – this study providing the first molecular data from the latter. Ordination revealed differences in AM fungal communities between different continents and climatic zones, suggesting that both biogeographic history and environmental conditions underlie the global variation of those communities. Our results show that a considerable proportion of Glomeromycota diversity has been recorded in many regions, though further large increases in richness can be expected in remaining unstudied areas. © 2013 Springer-Verlag Berlin Heidelberg. |
| Address |
INRA-Joint Research Unit Ecology of Guiana Forests (Ecofog), campus agronomique, BP 709, 97387 Kourou cedex, French Guiana |
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Export Date: 25 June 2013; Source: Scopus |
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no |
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EcoFoG @ webmaster @ |
Serial |
493 |
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Vanbellingen, Q.P.; Fu, T.; Bich, C.; Amusant, N.; Stien, D.; Della-Negra, S.; Touboul, D.; Brunelle, A. |
| Title |
Mapping Dicorynia guianensis Amsh. wood constituents by submicron resolution cluster-TOF-SIMS imaging |
Type |
Journal Article |
| Year |
2016 |
Publication |
Journal of Mass Spectrometry |
Abbreviated Journal |
Journal of Mass Spectrometry |
| Volume |
51 |
Issue |
6 |
Pages |
412-423 |
| Keywords |
Dicorynia guianensis; heartwood formation; mass spectrometry imaging; Tof-Sims; tropical wood; tryptamine |
| Abstract |
The preparation of tropical wood surface sections for time-of-flight secondary ion mass spectrometry imaging is described, and the use of delayed extraction of secondary ions and its interest for the analysis of vegetal surface are shown. The method has been applied to the study by time-of-flight secondary ion mass spectrometry imaging with a resolution of less than one micron of a tropical wood species, Dicorynia guianensis, which is one of the most exploited wood in French Guiana for its durable heartwood. The heartwood of this species exhibits an economical importance, but its production is not controlled in forestry. Results show an increase of tryptamine from the transition zone and a concomitant decrease of inorganic ions and starch fragment ions. These experiments lead to a better understanding of the heartwood formation and the origin of the natural durability of D. guianensis. Copyright © 2016 John Wiley & Sons, Ltd. Copyright © 2016 John Wiley & Sons, Ltd. |
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Department of Chemistry and Biochemistry, Florida International University, Miami, FL, United States |
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Export Date: 28 June 2016 |
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no |
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EcoFoG @ webmaster @ |
Serial |
684 |
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Vedel, V.; Cerdan, A.; Martinez, Q.; Baraloto, C.; Petitclerc, F.; Orivel, J.; Fortunel, C. |
| Title |
Day-time vs. Night-time sampling does not affect estimates of spider diversity across a land use gradient in the Neotropics |
Type |
Journal Article |
| Year |
2015 |
Publication |
Journal of Arachnology |
Abbreviated Journal |
Journal of Arachnology |
| Volume |
43 |
Issue |
3 |
Pages |
413-416 |
| Keywords |
Araneae; community; day; night; sampling protocol |
| Abstract |
To obtain a reliable description of spider communities, robust sampling protocols are crucial. However, it remains unclear if descriptions of spider communities in tropical habitats require both day and night sampling. Here we tested whether sampling both day and night in high and low vegetation strata would lead to better diversity estimates of spider communities than sampling at only one period of the day. We determined spider taxonomic diversity in a network of 12 plots in French Guiana along a vegetation gradient. We found high alpha diversity of spiders as expected for a tropical area at every site. We showed strong differences in spider alpha and beta diversity between high and low vegetation strata, while they were similar between day and night sampling. Our results suggest that collecting spiders at only one period is sufficient to describe the diversity of spider communities across land use types in the neotropics. © The American Arachnological Society. |
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Department of Biology, University of Maryland, College Park, MD, United States |
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Export Date: 10 December 2015 |
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no |
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EcoFoG @ webmaster @ |
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641 |
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Lebrini, M.; Suedile, F.;Roos, C. |
| Title |
Corrosion inhibitory action of ethanol extract from Bagassa guianensis on the corrosion of zinc in ASTM medium |
Type |
Journal Article |
| Year |
2018 |
Publication |
Journal of Materials and Environmental Sciences |
Abbreviated Journal |
Journal of Materials and Environmental Sciences |
| Volume |
9 |
Issue |
2 |
Pages |
414-423 |
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| Abstract |
Ethanol extract of Bagassa guianensis was tested as corrosion inhibitor for zinc in ASTM medium using polarization and electrochemical impedance spectroscopy (EIS). The results obtained show that this plant extract could serve as an effective inhibitor for the corrosion of zinc in sodium chloride media. The extract obtained give inhibition around 85%. Polarization curves show that Bagassa guianensis extract affects the anodic and cathodic reactions and the corrosion potential values were shifted to the positive potentials in the presence of the crude extract in the ASTM medium. The experimental data obtained from EIS method show a frequency distribution and therefore a modelling element with frequency dispersion behavior, a constant phase element (CPE alpha,Q ) has been used. Graphical methods are illustrated by synthetic data to determine the parameter of CPE (alpha, Q). Studies on the phytochemical constituents of thetotal extract were also established. Electrochemical studies, on the chemical families present in the crude extract, were also carried out to find the main constituents responsible for corrosion inhibition properties of the plant extract. |
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no |
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EcoFoG @ webmaster @ |
Serial |
797 |
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Sist, P.; Sheil, D.; Kartawinata, K.; Priyadi, H. |
| Title |
Reduced-impact logging in Indonesian Borneo: some results confirming the need for new silvicultural prescriptions |
Type |
Journal Article |
| Year |
2003 |
Publication |
Forest Ecology and Management |
Abbreviated Journal |
For. Ecol. Manage. |
| Volume |
179 |
Issue |
1-3 |
Pages |
415-427 |
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| Abstract |
Reduced-impact logging (RIL) and conventional techniques (CNV) were compared in a mixed dipterocarp hill forest in East Kalimantan in three blocks of about 100 ha each. Damage was evaluated using pre- and post-harvesting assessments in 24 one-hectare sample plots. RIL techniques nearly halved the number of trees destroyed (36 vs 60 trees/ha). RIL's main benefit was in the reduction of skidding damage (9.5% of the original tree population in RIL vs 25% in CNV). Before logging, mean canopy openness in CNV (three plots only) and RIL (9 plots) was similar (3.6 and 3.1%) and not significantly different (x(2) = 2.73, P = 0.254). After logging, the mean canopy openness was 19.2% in CNV (n = 9 plots) and 13.3% in RIL (n = 8 plots), and the distributions of the canopy class in RIL and CNV significantly different x(2) = 43.56, P < 0.001). CNV plots showed a higher proportion of measurements in the most open class greater than or equal to30% than in RIL. At a larger scale, the area of skidtrail per unit timber volume extracted was halved in the RIL compartment (15 m(2) vs 27 m(2) m(-3) for CNV). However, under high felling intensity (>8 trees/ha), both stand damage and canopy disturbance in RIL approached those recorded in CNV under low or moderate felling regime. Over this felling intensity threshold the effectiveness of RIL in reducing tree damage is limited. In mixed dipterocarp forest where harvestable timber density generally exceeds 10 trees/ha, a minimum diameter felling limit is clearly insufficient to keep extraction rates below 8 trees/ha. Based on these new results and previous studies in Borneo, we suggest three silvicultural rules: (1) to keep a minimum distance between stumps of ca. 40 m, (2) to ensure only single tree gaps using directional felling, (3) to harvest only stems with 60-100 cm dbh. Foresters, policy makers and certifiers should consider these as criteria for sustainable forest management. We emphasise the need to expand harvesting studies to look at impacts and trade-offs across larger forest landscapes, to expand RIL beyond silvicultural concepts and to include the maintenance of other forest goods and services. (C) 2002 Elsevier Science B.V. All rights reserved. |
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0378-1127 |
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| Notes |
WOS:000183836300033 |
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no |
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EcoFoG @ webmaster @ |
Serial |
311 |
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Leroy, C.; Jauneau, A.; Martinez, Y.; Cabin-Flaman, A.; Gibouin, D.; Orivel, J.; Séjalon-Delmas, N. |
| Title |
Exploring fungus-plant N transfer in a tripartite ant-plant-fungus mutualism |
Type |
Journal Article |
| Year |
2017 |
Publication |
Annals of Botany |
Abbreviated Journal |
Annals of Botany |
| Volume |
120 |
Issue |
3 |
Pages |
417-426 |
| Keywords |
Ascomycetes; endophytic fungi; Hirtella physophora; microscopy; mutualism; myrmecophyte; NanoSIMS; stable isotope |
| Abstract |
Background and Aims The plant Hirtella physophora, the ant Allomerus decemarticulatus and a fungus, Trimmatostroma sp., form a tripartite association. The ants manipulate both the plant trichomes and the fungus to build galleries under the stems of their host plant used to capture prey. In addition to its structural role, the fungus also improves nutrient uptake by the host plant. But it still remains unclear whether the fungus plays an indirect or a direct role in transferring nutrients to the plant. This study aimed to trace the transfer of N from the fungus to the plant's stem tissue. • Methods Optical microscopy and transmission electron microscopy (TEM) were used to investigate the presence of fungal hyphae in the stem tissues. Then, a 15N-labelling experiment was combined with a nanoscale secondary-ion mass spectrometry (NanoSIMS 50) isotopic imaging approach to trace the movement of added 15N from the fungus to plant tissues. • Key Results The TEM images clearly showed hyphae inside the stem tissue in the cellular compartment. Also, fungal hyphae were seen perforating the wall of the parenchyma cell. The 15N provisioning of the fungus in the galleries resulted in significant enrichment of the 15N signature of the plant's leaves 1 d after the 15N-labelling solution was deposited on the fungus-bearing trap. Finally, NanoSIMS imaging proved that nitrogen was transferred biotrophically from the fungus to the stem tissue. • Conclusions This study provides evidence that the fungi are connected endophytically to an ant-plant system and actively transfer nitrogen from 15N-labelling solution to the plant's stem tissues. Overall, this study underlines how complex the trophic structure of ant-plant interactions is due to the presence of the fungus and provides insight into the possibly important nutritional aspects and tradeoffs involved in myrmecophyte-ant mutualisms. © The Author 2017. |
| Address |
Laboratoire de Recherches en Sciences Végétales, Université de Toulouse, CNRS, UPS, France |
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Export Date: 2 October 2017 |
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no |
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EcoFoG @ webmaster @ |
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767 |
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Phillips, P.D.; Thompson, I.S.; Silva, J.N.M.; van Gardingen, P.R.; Degen, B. |
| Title |
Scaling up models of tree competition for tropical forest population genetics simulation |
Type |
Journal Article |
| Year |
2004 |
Publication |
Ecological Modelling |
Abbreviated Journal |
Ecol. Model. |
| Volume |
180 |
Issue |
2-3 |
Pages |
419-434 |
| Keywords |
tropical rain; forest; population genetics; model SYMFOR; eco-gene; scaling up; competition |
| Abstract |
Understanding the effects of logging activity on genetic diversity is an important aspect of establishing the sustainability of selective logging management operations in tropical forests. Genetic variation is affected by selective logging directly, through the removal of and damage to trees within the population, and indirectly, through a change in the forest structure and environment in which the remaining population lives. Eco-Gene is a population genetics model applied to tropical forests over a scale of hundreds of hectares. SYMFOR is a modelling framework for individual-based spatially explicit ecological and management models applied to tropical forests over a scale of 0.25 4 ha. We have linked the models to enable simulations using processes involved in both models. To overcome problems of scale, the spatially explicit competition index calculated in SYMFOR simulations has been modelled such that it can be applied at scales representing much larger areas for which the data are not available, as required by Eco-Gene. The competition index is modelled as a distribution on a grid-square basis, and implemented in the linked Eco-Gene/SYMFOR system. Each tree within a grid-square is given a “relative competition” within the distribution, biased according to species. A competition index value is obtained for the tree by transforming the grid-square distribution to be relevant to the size of the tree, and extracting a value according to the tree's relative competition within the distribution. The distribution and each tree's relative competition within it change according to the effects of growth, mortality and logging activity. The model was calibrated using data from the Tapajos region of the Eastern Amazon forest. This paper describes the model, its calibration and validation and the implications of scaling up from an explicit representation to a modelled quantity. (C) 2004 Elsevier B.V. All rights reserved. |
| Address |
Embrapa Amazonia Oriental, BR-66095100 Belem, Para, Brazil, Email: paul.phillips@envams.co.uk |
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ELSEVIER SCIENCE BV |
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0304-3800 |
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ISI:000224635700012 |
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no |
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EcoFoG @ eric.marcon @ |
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234 |
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Baraloto, C.; Couteron, P. |
| Title |
Fine-scale Microhabitat Heterogeneity in a French Guianan Forest |
Type |
Journal Article |
| Year |
2010 |
Publication |
Biotropica |
Abbreviated Journal |
Biotropica |
| Volume |
42 |
Issue |
4 |
Pages |
420-428 |
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canopy gap; geostatistics; light availability; microclimate; soil moisture; soil nutrients; topography |
| Abstract |
We examined fine-scale heterogeneity of environmental conditions in a primary rain forest in French Guiana to describe variation in microhabitats that plants may experience during establishment. We characterized both the range as well as the spatial structuring of 11 environmental factors important for seedling establishment in six hexagonal sampling grids, one each in gap and understory sites at three points representing the predominant geomorphic units in this primary forest. Each grid contained 37 sampling points separated by 31 cm-20 m. Monte-Carlo tests of semivariograms against complete spatial randomness indicated that for many variables in all six sampling grids, spatial dependence did not exceed 1 m. A principal component analysis of all sampling points revealed a lack of spatial microhabitat structure, rather than homogeneous patches associated with canopy structure or geomorphology. Our results suggest that ample fine-scale spatial heterogeneity exists to support the coexistence of plant species with differential abiotic requirements for regeneration. |
| Address |
[Baraloto, Christopher] INRA, UMR Ecol Forets Guyane, F-97387 Kourou, France, Email: chris.baraloto@ecofog.gf |
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WILEY-BLACKWELL PUBLISHING, INC |
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0006-3606 |
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ISI:000279438900005 |
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no |
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EcoFoG @ eric.marcon @ |
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55 |
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Parelle, J.; Zapater, M.; Scotti-Saintagne, C.; Kremer, A.; Jolivet, Y.; Dreyer, E.; Brendel, O. |
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Quantitative trait loci of tolerance to waterlogging in a European oak (Quercus robur L.): physiological relevance and temporal effect patterns |
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Journal Article |
| Year |
2007 |
Publication |
Plant Cell and Environment |
Abbreviated Journal |
Plant Cell Environ. |
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30 |
Issue |
4 |
Pages |
422-434 |
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allelic substitution effect; correlation clustering; epinasty; hypertrophied lenticel; multi-environment model; root hypoxia |
| Abstract |
Quercus robur L. is a mid-European broadleaved tree species that grows readily on temporary waterlogged soils. An experiment aiming to identify potential markers of tolerance to waterlogging in this species and to assess the degree of genetic control over the corresponding traits was conducted. Quantitative trait loci (QTL) were assessed in an F-1 progeny for responses to waterlogging, and the relevance of the observed traits as markers of tolerance was investigated using a precise description of the time course of their expression. Five significant QTL involved in the response to waterlogging were identified. In particular, QTL were detected for the development of hypertrophied lenticels and for the degree of leaf epinasty, but not for the formation of adventitious roots. A multi-environment QTL model allowed a detailed description of the time course (7 weeks) of the allelic substitution effect of some of these QTL. Correlation clustering identified significant clusters of QTL, at inter-trait as well as at intra-trait level. These clusters suggest the occurrence of a genetically controlled response cascade to waterlogging. |
| Address |
UHP, UMR 1137, Ctr INRA Nancy, F-54280 Champenoux, France, Email: brendel@nancy.inra.fr |
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BLACKWELL PUBLISHING |
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0140-7791 |
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ISI:000244419700005 |
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no |
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EcoFoG @ eric.marcon @ |
Serial |
219 |
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