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Fanin, N., Barantal, S., Fromin, N., Schimann, H., Schevin, P., & Hattenschwiler, S. (2012). Distinct Microbial Limitations in Litter and Underlying Soil Revealed by Carbon and Nutrient Fertilization in a Tropical Rainforest. PLoS ONE, 7(12), e49990.
Abstract: Human-caused alterations of the carbon and nutrient cycles are expected to impact tropical ecosystems in the near future. Here we evaluated how a combined change in carbon (C), nitrogen (N) and phosphorus (P) availability affects soil and litter microbial respiration and litter decomposition in an undisturbed Amazonian rainforest in French Guiana. In a fully factorial C (as cellulose), N (as urea), and P (as phosphate) fertilization experiment we analyzed a total of 540 litterbag-soil pairs after a 158-day exposure in the field. Rates of substrate-induced respiration (SIR) measured in litter and litter mass loss were similarly affected by fertilization showing the strongest stimulation when N and P were added simultaneously. The stimulating NP effect on litter SIR increased considerably with increasing initial dissolved organic carbon (DOC) concentrations in litter, suggesting that the combined availability of N, P, and a labile C source has a particularly strong effect on microbial activity. Cellulose fertilization, however, did not further stimulate the NP effect. In contrast to litter SIR and litter mass loss, soil SIR was reduced with N fertilization and showed only a positive effect in response to P fertilization that was further enhanced with additional C fertilization. Our data suggest that increased nutrient enrichment in the studied Amazonian rainforest can considerably change microbial activity and litter decomposition, and that these effects differ between the litter layer and the underlying soil. Any resulting change in relative C and nutrient fluxes between the litter layer and the soil can have important consequences for biogeochemical cycles in tropical forest ecosystems. © 2012 Fanin et al.
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Barabe, D., Cuerrier, A., & Quilichini, A. (2012). Botanical gardens: Between science and commercialization. Natures Sciences Societes, 20(3), 334–342.
Abstract: Les jardins botaniques: Entre science et commercialisation.
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Dejean, A., Carpenter, J. M., Corbara, B., Wright, P., Roux, O., & LaPierre, L. M. (2012). The hunter becomes the hunted: When cleptobiotic insects are captured by their target ants. Naturwissenschaften, 99(4), 265–273.
Abstract: Here we show that trying to rob prey (cleptobiosis) from a highly specialized predatory ant species is risky. To capture prey, Allomerus decemarticulatus workers build gallery-shaped traps on the stems of their associated myrmecophyte, Hirtella physophora. We wondered whether the frequent presence of immobilized prey on the trap attracted flying cleptoparasites. Nine social wasp species nest in the H. physophora foliage; of the six species studied, only Angiopolybia pallens rob prey from Allomerus colonies. For those H. physophora not sheltering wasps, we noted cleptobiosis by stingless bees (Trigona), social wasps (A. pallens and five Agelaia species), assassin bugs (Reduviidae), and flies. A relationship between the size of the robbers and their rate of capture by ambushing Allomerus workers was established for social wasps; small wasps were easily captured, while the largest never were. Reduviids, which are slow to extract their rostrum from prey, were always captured, while Trigona and flies often escaped. The balance sheet for the ants was positive vis-à-vis the reduviids and four out of the six social wasp species. For the latter, wasps began by cutting up parts of the prey's abdomen and were captured (or abandoned the prey) before the entire abdomen was retrieved so that the total weight of the captured wasps exceeded that of the prey abdomens. For A. pallens, we show that the number of individuals captured during attempts at cleptobiosis increases with the size of the Allomerus' prey. © Springer-Verlag 2012.
Keywords: Ant predation; Cleptobiosis; Flies and Reduviidae; Myrmecophyte; Social wasps; Stingless bees
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Lamarre, G. P. A., Baraloto, C., Fortunel, C., Dávila, N., Mesones, I., Rios, J. G., et al. (2012). Herbivory, growth rates, and habitat specialization in tropical tree lineages: implications for Amazonian beta-diversity. Ecology, 93(sp8), S195–S210.
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Barabe, D., Lacroix, C., & Gibernau, M. (2012). Developmental floral morphology of Syngonium in the context of the tribe Caladieae (Araceae). Willdenowia – Annals of the Botanic Garden and Botanical Museum Berlin-Dahlem, 42(2), 297–305.
Abstract: The floral development of Syngonium angustatum is analysed in the context of a recently published molecular phylogeny of the Araceae. The initiation of discoid floral primordia occurs acropetally on the surface of the inflorescence. Female flowers, atypical bisexual flowers, sterile male flowers and male flowers are inserted on the same phyllotactic spirals on the spadix. Stamen primordia are initiated simultaneously on the periphery of more or less circular floral primordia. There are four stamens per flower (rarely three). In a synandrium, the fusion of stamens occurs very early during their developmental cycle. In some flowers one or two stamens remain free. The staminodes are also initiated on the periphery of the discoid floral primordium and their number varies from four to six. The growth of the fused staminodes will eventually form a longitudinal cavity in the centre of the mature synandrode. On the synandrodes located near the female zone, one or two staminodes remain free during development. No atypical bisexual flowers were observed on the inflorescence of Syngonium. The presence of a few calcium oxalate crystals was observed on the surface of all types of flowers. All the atypical flowers located at the base of the sterile zone corresponded to sterile male flowers and resulted from a more or less random disorganisation of the typical structure of a synandrode. In the Aroideae, free stamens or staminodes represent a plesiomorphic condition. The association of synandria and synandrodes is present in all early diverging genera of the tribe Caladieae and could represent the ancestral state. It is not clear if free stamens have evolved once or twice in the tribe Caladieae, both scenarios are possible.
Keywords: Aroids; Inflorescence; Phylogeny; Oxalate Crystals; Flower
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Aimene, Y., Dorville, R., & Omrane, A. (2013). Optimal control for trees trunk diameter estimation in rain forest ecology. Applied Mathematical Sciences, 7(17-20), 807–816.
Abstract: We study the optimal control question for an important mechanical problem related to tree trunk diameter variation in tropical forest ecology where some data are missing. Within a cost function, the control problem is formulated with a mechanical model that requires boundary conditions tosolve all equations. We give a characterization of the optimal measurement function for the tree trunk problem.
Keywords: Missing data; Optimal control; Tree trunk diameter
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Molto, Q., Rossi, V., & Blanc, L. (2013). Error propagation in biomass estimation in tropical forests. Methods in Ecology and Evolution, 4(2), 175–183.
Abstract: Reliable above-ground biomass (AGB) estimates are required for studies of carbon fluxes and stocks. However, there is a huge lack of knowledge concerning the precision of AGB estimates and the sources of this uncertainty. At the tree level, the tree height is predicted using the tree diameter at breast height (DBH) and a height sub-model. The wood-specific gravity (WSG) is predicted with taxonomic information and a WSG sub-model. The tree mass is predicted using the predicted height, the predicted WSG and the biomass sub-model. Our models were inferred with Bayesian methods and the uncertainty propagated with a Monte Carlo scheme. The uncertainties in the predictions of tree height, tree WSG and tree mass were neglected sequentially to quantify their contributions to the uncertainty in AGB. The study was conducted in French Guiana where long-term research on forest ecosystems provided an outstanding data collection on tree height, tree dynamics, tree mass and species WSG. We found that the uncertainty in the AGB estimates was found to derive primarily from the biomass sub-model. The models used to predict the tree heights and WSG contributed negligible uncertainty to the final estimate. Considering our results, a poor knowledge of WSG and the height-diameter relationship does not increase the uncertainty in AGB estimates. However, it could lead to bias. Therefore, models and databases should be used with care. This study provides a methodological framework that can be broadly used by foresters and plant ecologist. It provides the accurate confidence intervals associated with forest AGB estimates made from inventory data. When estimating region-scale AGB values (through spatial interpolation, spatial modelling or satellite signal treatment), the uncertainty of the forest AGB value in the reference forest plots has to be taken in account. We believe that in the light of the Reducing Emissions from Deforestation and Degradation debate, our method is a crucial step in monitoring carbon stocks and their spatio-temporal evolution. © 2012 The Authors. Methods in Ecology and Evolution © 2012 British Ecological Society.
Keywords: Bayesian framework; Modelling; Redd; Uncertainty propagation
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Brémaud, I., Ruelle, J., Thibaut, A., & Thibaut, B. (2013). Changes in viscoelastic vibrational properties between compression and normal wood: Roles of microfibril angle and of lignin. Holzforschung, 67(1), 75–85.
Abstract: This study aims at better understanding the respective influences of specific gravity (γ ), microfibril angle (MFA), and cell wall matrix polymers on viscoelastic vibrational properties of wood in the axial direction. The wide variations of properties between normal wood (NW) and compression wood (CW) are in focus. Three young bent trees (Picea abies, Pinus sylvestris and Pinus pinaster ), which recovered verticality, were sampled. Several observed differences between NW and CW were highly significant in terms of anatomical, physical (γ, shrinkage, CIE Lab colorimetry), mechanical (compressive strength), and vibrational properties. The specific dynamic modulus of elasticity (E′/γ) decreases with increasing MFA, and Young's modulus (E′) can be satisfactorily explained by γ and MFA. Apparently, the type of the cell wall polymer matrix is not influential in this regard. The damping coefficient (tan δ) does not depend solely on the MFA of NW and CW. The tanδ-E′/γ relationship evidences that, at equivalent E′/γ, the tan δ of CW is approximately 34% lower than that of NW. This observation is ascribed to the more condensed nature of CW lignins, and this is discussed in the context of previous findings in other hygrothermal and time/frequency domains. It is proposed that the lignin structure and the amount and type of extractives, which are both different in various species, are partly responsible for taxonomy-related damping characteristics. Copyright © by Walter de Gruyter • Berlin • Boston.
Keywords: Compression wood (CW); Damping coefficient; Ft-Ir; Internal friction; Lignin; Microfibril angle (MFA); Picea abies; Pinus pinaster; Pinus sylvestris; Specific dynamic modulus of elasticity; Viscoelastic vibrational properties
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Audigeos, D., Brousseau, L., Traissac, S., Scotti-Saintagne, C., & Scotti, I. (2013). Molecular divergence in tropical tree populations occupying environmental mosaics. Journal of Evolutionary Biology, 26(3), 529–544.
Abstract: Unveiling the genetic basis of local adaptation to environmental variation is a major goal in molecular ecology. In rugged landscapes characterized by environmental mosaics, living populations and communities can experience steep ecological gradients over very short geographical distances. In lowland tropical forests, interspecific divergence in edaphic specialization (for seasonally flooded bottomlands and seasonally dry terra firme soils) has been proven by ecological studies on adaptive traits. Some species are nevertheless capable of covering the entire span of the gradient; intraspecific variation for adaptation to contrasting conditions may explain the distribution of such ecological generalists. We investigated whether local divergence happens at small spatial scales in two stands of Eperua falcata (Fabaceae), a widespread tree species of the Guiana Shield. We investigated Single Nucleotide Polymorphisms (SNP) and sequence divergence as well as spatial genetic structure (SGS) at four genes putatively involved in stress response and three genes with unknown function. Significant genetic differentiation was observed among sub-populations within stands, and eight SNP loci showed patterns compatible with disruptive selection. SGS analysis showed genetic turnover along the gradients at three loci, and at least one haplotype was found to be in repulsion with one habitat. Taken together, these results suggest genetic differentiation at small spatial scale in spite of gene flow. We hypothesize that heterogeneous environments may cause molecular divergence, possibly associated to local adaptation in E. falcata. © 2012 European Society For Evolutionary Biology.
Keywords: Candidate genes; Drought; Eperua falcata; Flooding; Neotropics; Outlier loci; Tree genetics
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Odonne, G., Valadeau, C., Alban-Castillo, J., Stien, D., Sauvain, M., & Bourdy, G. (2013). Medical ethnobotany of the Chayahuita of the Paranapura basin (Peruvian Amazon). J. Ethnopharmacol., 146(1), 127–153.
Abstract: Ethnopharmacological relevance: Up until now, the plant pharmacopoeia of the Chayahuita, an ethnic group from the Peruvian Amazon, has been poorly defined. This paper details the uses of medicinal plants within this community, as recorded in two villages of the Paranapura basin, Soledad and Atahualpa de Conchiyacu. This study aimed to describe the basis of the Chayahuita traditional medical system, to document part of the medicinal plant corpus, and to compare it with data from other Amazonian ethnic groups. Material and methods: Methodology was based (i) on field prospection with 26 informants (ethnobotanical walks methodology), (ii) semi-structured interviews including 93 people (49 men and 44 women) focused on the most recent health problem experienced and on the therapeutic options chosen, (iii) individual or group thematic discussions relating to disease and treatments, (iv) 6-months of participants' observations between May 2007 and May 2008. At the end of the project in May 2008 a workshop was organized to cross-check the data with the help of 12 of the most interested informants. Results: Six hundred and seventeen voucher specimens were collected, corresponding to 303 different species, from which 274 (belonging to 83 families) are documented here. Altogether 492 recipes were recorded, corresponding to a global figure of 541 therapeutic uses and a total of 664 use reports. The main therapeutic uses are related to dermatological problems (103 uses; 19%), gastro-intestinal complaints (69 uses; 13%) and malaria/fevers (52 uses; 10%). Diseases are analysed according to Chayahuita concepts, and for each disease the species having a high frequency of citation are listed, and the most frequently used remedies are described. Whenever possible, comparisons with other Amazonian groups have been drawn. Conclusion: Chayahuita nosology and medical ethnobotany appear to draw their inspiration from a common panamazonian root. Despite the fact that a certain number of medicinal plants are shared with other nearby groups, there seem to be specific uses for some species, thus highlighting the originality of the Chayahuita pharmacopoeia. Presently there is a certain disinterest in the most traditional area of the Chayahuita medical ways, and the role of the penutu (shaman) seems to be less highly-valued than in the past. Nonetheless, the use of medicinal plants in phytotherapeutic treatment is very much a living, shared knowledge. © 2012 Elsevier Ireland Ltd. All rights reserved.
Keywords: Amazon; Chayahuita; Medicinal plant; Peru; Pharmacopeia; Traditional medicine
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