| Records |
Author  |
Gourlet-Fleury, S.; Blanc, L.; Picard, N.; Sist, P.; Dick, J.; Nasi, R.; Swaine, M.D.; Forni, E. |
| Title |
Grouping species for predicting mixed tropical forest dynamics: looking for a strategy |
Type |
Journal Article |
| Year |
2005 |
Publication |
Annals of Forest Science |
Abbreviated Journal |
Ann. For. Sci. |
| Volume |
62 |
Issue |
8 |
Pages |
785-796 |
| Keywords |
cross-comparisons; functional groups; modelling strategy; species classifications |
| Abstract |
The high species diversity of mixed tropical forests hinders the development of forest dynamic models. A solution commonly adopted is to cluster species in groups. There are various methods for grouping species that can be linked to three strategies (i) the ecological subjective strategy, (ii) the ecological data-driven strategy, and (iii) the dynamic process strategy. In the first two strategies a species will be assigned to a single group while in the latter strategy, a specific grouping is defined for each process of population dynamics ( typically based on recruitment, growth, mortality). Little congruency or convergence is observed in the literature between any two classifications of species. This may be explained by the independence between the sets of tree characters used to build species groups, or by the intra-specific variability of these characters. We therefore recommend the dynamic process strategy as the most convenient strategy for building groups of species. |
| Address |
Cirad Foret, F-34398 Montpellier, France, Email: sylvie.gourlet-fleury@cirad.fr |
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EDP SCIENCES S A |
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1286-4560 |
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ISI:000233972500001 |
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no |
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EcoFoG @ eric.marcon @ |
Serial |
228 |
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| Author |
Goulamoussene, Youven; Bedeau, Caroline; Descroix, Laurent; Deblauwe, Vincent; Linguet, Laurent; Herault, Bruno |
| Title |
Weak Environmental Controls of Tropical Forest Canopy Height in the Guiana Shield Remote Sensing |
Type |
Journal Article |
| Year |
2016 |
Publication |
Remote Sensing |
Abbreviated Journal |
Remote Sens |
| Volume |
8 |
Issue |
9 |
Pages |
747 |
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| Abstract |
Canopy height is a key variable in tropical forest functioning and for regional carbon inventories. We investigate the spatial structure of the canopy height of a tropical forest, its relationship with environmental physical covariates, and the implication for tropical forest height variation mapping. Making use of high-resolution maps of LiDAR-derived Digital Canopy Model (DCM) and environmental covariates from a Digital Elevation Model (DEM) acquired over 30,000 ha of tropical forest in French Guiana, we first show that forest canopy height is spatially correlated up to 2500 m. Forest canopy height is significantly associated with environmental variables, but the degree of correlation varies strongly with pixel resolution. On the whole, bottomland forests generally have lower canopy heights than hillslope or hilltop forests. However, this global picture is very noisy at local scale likely because of the endogenous gap-phase forest dynamic processes. Forest canopy height has been predictively mapped across a pixel resolution going from 6 m to 384 m mimicking a low resolution case of 3 points·km − 2 . Results of canopy height mapping indicated that the error for spatial model with environment effects decrease from 8.7 m to 0.91 m, depending of the pixel resolution. Results suggest that, outside the calibration plots, the contribution of environment in shaping the global canopy height distribution is quite limited. This prevents accurate canopy height mapping based only on environmental information, and suggests that precise canopy height maps, for local management purposes, can only be obtained with direct LiDAR monitoring. |
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EcoFoG @ webmaster @ |
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724 |
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Goulamoussene, Y.; Bedeau, C.; Descroix, L.; Linguet, L.; Herault, B. |
| Title |
Environmental control of natural gap size distribution in tropical forests |
Type |
Journal Article |
| Year |
2017 |
Publication |
Biogeosciences |
Abbreviated Journal |
Biogeosciences |
| Volume |
14 |
Issue |
2 |
Pages |
353-364 |
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| Abstract |
Natural disturbances are the dominant form of forest regeneration and dynamics in unmanaged tropical forests. Monitoring the size distribution of treefall gaps is important to better understand and predict the carbon budget in response to land use and other global changes. In this study, we model the size frequency distribution of natural canopy gaps with a discrete power law distribution. We use a Bayesian framework to introduce and test, using Monte Carlo Markov chain and Kuo-Mallick algorithms, the effect of local physical environment on gap size distribution. We apply our methodological framework to an original light detecting and ranging dataset in which natural forest gaps were delineated over 30 000 ha of unmanaged forest. We highlight strong links between gap size distribution and environment, primarily hydrological conditions and topography, with large gaps being more frequent on floodplains and in wind-exposed areas. In the future, we plan to apply our methodological framework on a larger scale using satellite data. Additionally, although gap size distribution variation is clearly under environmental control, variation in gap size distribution in time should be tested against climate variability. © Author(s) 2017. |
| Address |
Cirad, UMR EcoFoG, AgroParisTech, CNRS, Inra, Univ Antilles, Univ Guyane, Kourou, French Guiana |
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Export Date: 7 February 2017 |
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no |
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EcoFoG @ webmaster @ |
Serial |
729 |
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González, A.L.; Céréghino, R.; Dézerald, O.; Farjalla, V.F.; Leroy, C.; Richardson, B.A.; Richardson, M.J.; Romero, G.Q.; Srivastava, D.S. |
| Title |
Ecological mechanisms and phylogeny shape invertebrate stoichiometry: A test using detritus-based communities across Central and South America |
Type |
Journal Article |
| Year |
2018 |
Publication |
Functional Ecology |
Abbreviated Journal |
Funct Ecol |
| Volume |
32 |
Issue |
10 |
Pages |
2448-2463 |
| Keywords |
body size scaling; carnivores; detritivores; ecological stoichiometry; macroinvertebrates; nitrogen; phosphorous; phylogenetic signal |
| Abstract |
Stoichiometric differences among organisms can affect trophic interactions and rates of nutrient cycling within ecosystems. However, we still know little about either the underlying causes of these stoichiometric differences or the consistency of these differences across large geographical extents. Here, we analyse elemental (carbon, nitrogen, phosphorus) composition of 872 aquatic macroinvertebrates (71 species) inhabiting tank bromeliads (n = 140) from five distantly located sites across Central and South America to (i) test phylogenetic, trophic and body size scaling explanations for why organisms differ in elemental composition and (ii) determine whether patterns in elemental composition are universal or context dependent. Taxonomy explained most variance in elemental composition, even though phylogenetic signals were weak and limited to regional spatial extents and to the family level. The highest elemental contents and lowest carbon:nutrient ratios were found in organisms at high trophic levels and with smaller body size, regardless of geographical location. Carnivores may have higher nutrient content and lower carbon:nutrient ratios than their prey, as organisms optimize growth by choosing the most nutrient-rich resources to consume and then preferentially retain nutrients over carbon in their bodies. Smaller organisms grow proportionally faster than large organisms and so are predicted to have higher nutrient requirements to fuel RNA and protein synthesis. Geography influenced the magnitude, more than the direction, of the ecological and/or phylogenetic effects on elemental composition. Overall, our results show that both ecological (i.e. trophic group) and evolutionary drivers explain among-taxa variation in the elemental content of invertebrates, whereas intraspecific variation is mainly a function of body size. Our findings also demonstrate that restricting analyses of macroinvertebrate stoichiometry solely to either the local scale or species level affects inferences of the patterns in invertebrate elemental content and their underlying mechanisms. |
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John Wiley & Sons, Ltd (10.1111) |
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0269-8463 |
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| Notes |
doi: 10.1111/1365-2435.13197 |
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no |
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EcoFoG @ webmaster @ |
Serial |
849 |
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Gonzalez, M.A.; Roger, A.; Courtois, E.A.; Jabot, F.; Norden, N.; Paine, C.E.T.; Baraloto, C.; Thebaud, C.; Chave, J. |
| Title |
Shifts in species and phylogenetic diversity between sapling and tree communities indicate negative density dependence in a lowland rain forest |
Type |
Journal Article |
| Year |
2010 |
Publication |
Journal of Ecology |
Abbreviated Journal |
J. Ecol. |
| Volume |
98 |
Issue |
1 |
Pages |
137-146 |
| Keywords |
APG II plus rbcL megatree; density dependence; DNA barcoding; French Guiana; phylogenetic diversity; species diversity; tropical plant communities |
| Abstract |
P>1. As trees in a given cohort progress through ontogeny, many individuals die. This risk of mortality is unevenly distributed across species because of many processes such as habitat filtering, interspecific competition and negative density dependence. Here, we predict and test the patterns that such ecological processes should inscribe on both species and phylogenetic diversity as plants recruit from saplings to the canopy. 2. We compared species and phylogenetic diversity of sapling and tree communities at two sites in French Guiana. We surveyed 2084 adult trees in four 1-ha tree plots and 943 saplings in sixteen 16-m2 subplots nested within the tree plots. Species diversity was measured using Fisher's alpha (species richness) and Simpson's index (species evenness). Phylogenetic diversity was measured using Faith's phylogenetic diversity (phylogenetic richness) and Rao's quadratic entropy index (phylogenetic evenness). The phylogenetic diversity indices were inferred using four phylogenetic hypotheses: two based on rbcLa plastid DNA sequences obtained from the inventoried individuals with different branch lengths, a global phylogeny available from the Angiosperm Phylogeny Group, and a combination of both. 3. Taxonomic identification of the saplings was performed by combining morphological and DNA barcoding techniques using three plant DNA barcodes (psbA-trnH, rpoC1 and rbcLa). DNA barcoding enabled us to increase species assignment and to assign unidentified saplings to molecular operational taxonomic units. 4. Species richness was similar between saplings and trees, but in about half of our comparisons, species evenness was higher in trees than in saplings. This suggests that negative density dependence plays an important role during the sapling-to-tree transition. 5. Phylogenetic richness increased between saplings and trees in about half of the comparisons. Phylogenetic evenness increased significantly between saplings and trees in a few cases (4 out of 16) and only with the most resolved phylogeny. These results suggest that negative density dependence operates largely independently of the phylogenetic structure of communities. 6. Synthesis. By contrasting species richness and evenness across size classes, we suggest that negative density dependence drives shifts in composition during the sapling-to-tree transition. In addition, we found little evidence for a change in phylogenetic diversity across age classes, suggesting that the observed patterns are not phylogenetically constrained. |
| Address |
[Gonzalez, Mailyn A.; Roger, Aurelien; Courtois, Elodie A.; Jabot, Franck; Norden, Natalia; Thebaud, Christophe; Chave, Jerome] Univ Toulouse 3, Lab Evolut & Diversite Biol, UMR 5174, CNRS, F-31062 Toulouse, France, Email: gonzalez.mailyn@gmail.com |
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WILEY-BLACKWELL PUBLISHING, INC |
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0022-0477 |
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| Notes |
ISI:000272657400015 |
Approved |
no |
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EcoFoG @ eric.marcon @ |
Serial |
88 |
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Gonzalez, M.A.; Baraloto, C.; Engel, J.; Mori, S.A.; Petronelli, P.; Riera, B.; Roger, A.; Thebaud, C.; Chave, J. |
| Title |
Identification of Amazonian Trees with DNA Barcodes |
Type |
Journal Article |
| Year |
2009 |
Publication |
PLoS One |
Abbreviated Journal |
PLoS One |
| Volume |
4 |
Issue |
10 |
Pages |
e7483 |
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| Abstract |
Background: Large-scale plant diversity inventories are critical to develop informed conservation strategies. However, the workload required for classic taxonomic surveys remains high and is particularly problematic for megadiverse tropical forests. Methodology/Principal Findings: Based on a comprehensive census of all trees in two hectares of a tropical forest in French Guiana, we examined whether plant DNA barcoding could contribute to increasing the quality and the pace of tropical plant biodiversity surveys. Of the eight plant DNA markers we tested (rbcLa, rpoC1, rpoB, matK, ycf5, trnL, psbA-trnH, ITS), matK and ITS had a low rate of sequencing success. More critically, none of the plastid markers achieved a rate of correct plant identification greater than 70%, either alone or combined. The performance of all barcoding markers was noticeably low in few species-rich clades, such as the Laureae, and the Sapotaceae. A field test of the approach enabled us to detect 130 molecular operational taxonomic units in a sample of 252 juvenile trees. Including molecular markers increased the identification rate of juveniles from 72% (morphology alone) to 96% (morphology and molecular) of the individuals assigned to a known tree taxon. Conclusion/Significance: We conclude that while DNA barcoding is an invaluable tool for detecting errors in identifications and for identifying plants at juvenile stages, its limited ability to identify collections will constrain the practical implementation of DNA-based tropical plant biodiversity programs. |
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PUBLIC LIBRARY SCIENCE |
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1932-6203 |
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ISI:000270880700009 |
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no |
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EcoFoG @ eric.marcon @ |
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189 |
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Gonzalès-Melo, Andrès ; Posada, Juan Manuel ; Beauchêne, Jacques ; Lehnebach, Romain ; Leviennois, Sébastien ; Rivera, Katherine ; Clair, Bruno |
| Title |
Radial variations in wood functional traits in a rain forest from eastern Amazonia |
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Journal Article |
| Year |
2021 |
Publication |
Trees |
Abbreviated Journal |
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36 |
Issue |
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Pages |
569–581 |
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Trees can modify their wood structure in response to changes in mechanical, hydraulic and storage demands during their life-cycles. Thus, examining radial variations in wood traits is important to expand our knowledge of tree functioning and species ecological strategies. Yet, several aspects of radial changes in wood functional traits are still poorly understood, especially in angiosperm trees from tropical humid forests. Here, we examined radial shifts in wood traits in trunks of tropical forest species and explored their potential ecological implications. We first examined radial variations in wood specific gravity (WSG). Then, we asked what anatomical traits drove radial variations in WSG, and whether WSG, vessel fraction and specific hydraulic conductivity vary independently from each other along the radius gradients. We measured WSG and eight wood anatomical traits, at different radial positions along the trunks, in 19 tree species with contrasting shade-tolerance from a lowland tropical forest in eastern Amazonia. Most species had significant radials shifts in WSG. Positive radial gradients in WSG (i.e., increments from pith to bark) were common among shade-intolerant species and were explained by different combinations of fiber and parenchyma traits, while negative radial shifts in WSG (e.g., decreases towards the bark) were present in shade-tolerants, but were generally weakly related to anatomical traits. We also found that, in general, WSG was unrelated to vessel fraction and specific hydraulic conductivity in any radial position. This study illustrates the contrasting radial variations in wood functional traits that occur in tree species from a humid lowland tropical forest. In particular, our results provide valuable insights into the anatomical traits driving WSG variations during tree development. These insights are important to expand our knowledge on tree ecological strategies by providing evidence on how wood allocation varies as trees grow, which in turn can be useful in studying trait-demography associations, and in estimating tree above-ground biomass. |
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Springer Link |
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no |
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EcoFoG @ webmaster @ |
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1037 |
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| Author |
Gond, V.; Guitet, S. |
| Title |
Remote Sensing in Post-Logging Diagnoses for Forest Management in French Guiana |
Type |
Journal Article |
| Year |
2009 |
Publication |
Bois et Forets des Tropiques |
Abbreviated Journal |
Bois For. Trop. |
| Volume |
63 |
Issue |
299 |
Pages |
5-13 |
| Keywords |
selective logging; logging impact inspections; French Guiana; remote sensing; forest management |
| Abstract |
This study is part of the activities carried out to monitor tow-impact logging operations in humid tropical forests. The sustainability of these activities is highly dependent on the scale of logging damage, and managers therefore need to carry out effective checks on the quality of forestry work. In this study, remote sensing was used to track the extension of logging operations and to assess damage, through images acquired during and after logging in each parcel. Analysis of the high-resolution images (10 m) clearly identifies logged-over clearings and some skidding tracks, allowing assessments of gaps opening up in the canopy. Several parcels were monitored in this French Guiana study. A simple diagnostic procedure was established for each parcel to assess logging intensity and identify new logging tracks and timber losses. The remote sensing toot thus helps to make more accurate assessments of logging quality and to draw relevant conclusions for the logging company. The study has demonstrated the usefulness of remote sensing to identify damage after logging. The quality of restitution of the damage was validated by means of a database on the logging terrain and through field missions. This post-logging inspection tool can now be automated for fully operational use by forest managers. |
| Address |
[Gond, Valery] Univ Laval, Fac Foresterie, Umr Ecofog Guyane francaise, Cirad,UR 36, Quebec City, PQ G1V OA6, Canada |
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CIRAD-CENTRE COOPERATION INT RECHERCHE AGRONOMIQUE POUR |
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0006-579X |
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| Notes |
ISI:000266156700001 |
Approved |
no |
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EcoFoG @ webmaster @ |
Serial |
280 |
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Gond, V.; Bartholome, E.; Ouattara, F.; Nonguierma, A.; Bado, L. |
| Title |
Monitoring and mapping of waters and wetlands in arid regions using the SPOT-4 VEGETATION imaging system |
Type |
Journal Article |
| Year |
2004 |
Publication |
International Journal of Remote Sensing |
Abbreviated Journal |
Int. J. Remote Sens. |
| Volume |
25 |
Issue |
5 |
Pages |
987-1004 |
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| Abstract |
Monitoring the state of small waterbodies and wetlands is very useful in dry regions, because their existence is entirely controlled by the rhythm of local rainfall. On VEGETATION image colour composites, waterbodies and marshy vegetation show up clearly. Yet simple image classification does not yield sufficiently good results because 'spectral signatures' vary significantly together with the ecological conditions of these surfaces. A robust contextual procedure taking into account local contrast was successfully developed and tested. A systematic validation was carried out and a map of waterbodies and wetlands was produced for Burkina Faso and neighbouring regions. |
| Address |
Ctr Commun Rech, I-21020 Ispra, VA, Italy, Email: valery.gond@cirad.fr |
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TAYLOR & FRANCIS LTD |
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0143-1161 |
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ISI:000187996500007 |
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EcoFoG @ eric.marcon @ |
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266 |
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Gomes, V.H.F.; IJff, S.D.; Raes, N.; Amaral, I.L.; Salomão, R.P.; de Souza Coelho, L.; de Almeida Matos, F.D.; Castilho, C.V.; de Andrade Lima Filho, D.; López, D.C.; Guevara, J.E.; Magnusson, W.E.; Phillips, O.L.; Wittmann, F.; de Jesus Veiga Carim, M.; Martins, M.P.; Irume, M.V.; Sabatier, D.; Molino, J.-F.; Bánki, O.S.; da Silva Guimarães, J.R.; Pitman, N.C.A.; Piedade, M.T.F.; Mendoza, A.M.; Luize, B.G.; Venticinque, E.M.; de Leão Novo, E.M.M.; Vargas, P.N.; Silva, T.S.F.; Manzatto, A.G.; Terborgh, J.; Reis, N.F.C.; Montero, J.C.; Casula, K.R.; Marimon, B.S.; Marimon, B.-H.; Coronado, E.N.H.; Feldpausch, T.R.; Duque, A.; Zartman, C.E.; Arboleda, N.C.; Killeen, T.J.; Mostacedo, B.; Vasquez, R.; Schöngart, J.; Assis, R.L.; Medeiros, M.B.; Simon, M.F.; Andrade, A.; Laurance, W.F.; Camargo, J.L.; Demarchi, L.O.; Laurance, S.G.W.; de Sousa Farias, E.; Nascimento, H.E.M.; Revilla, J.D.C.; Quaresma, A.; Costa, F.R.C.; Vieira, I.C.G.; Cintra, B.B.L.; Castellanos, H.; Brienen, R.; Stevenson, P.R.; Feitosa, Y.; Duivenvoorden, J.F.; Aymard C., G.A.; Mogollón, H.F.; Targhetta, N.; Comiskey, J.A.; Vicentini, A.; Lopes, A.; Damasco, G.; Dávila, N.; García-Villacorta, R.; Levis, C.; Schietti, J.; Souza, P.; Emilio, T.; Alonso, A.; Neill, D.; Dallmeier, F.; Ferreira, L.V.; Araujo-Murakami, A.; Praia, D.; do Amaral, D.D.; Carvalho, F.A.; de Souza, F.C.; Feeley, K.; Arroyo, L.; Pansonato, M.P.; Gribel, R.; Villa, B.; Licona, J.C.; Fine, P.V.A.; Cerón, C.; Baraloto, C.; Jimenez, E.M.; Stropp, J.; Engel, J.; Silveira, M.; Mora, M.C.P.; Petronelli, P.; Maas, P.; Thomas-Caesar, R.; Henkel, T.W.; Daly, D.; Paredes, M.R.; Baker, T.R.; Fuentes, A.; Peres, C.A.; Chave, J.; Pena, J.L.M.; Dexter, K.G.; Silman, M.R.; Jørgensen, P.M.; Pennington, T.; Di Fiore, A.; Valverde, F.C.; Phillips, J.F.; Rivas-Torres, G.; von Hildebrand, P.; van Andel, T.R.; Ruschel, A.R.; Prieto, A.; Rudas, A.; Hoffman, B.; Vela, C.I.A.; Barbosa, E.M.; Zent, E.L.; Gonzales, G.P.G.; Doza, H.P.D.; de Andrade Miranda, I.P.; Guillaumet, J.-L.; Pinto, L.F.M.; de Matos Bonates, L.C.; Silva, N.; Gómez, R.Z.; Zent, S.; Gonzales, T.; Vos, V.A.; Malhi, Y.; Oliveira, A.A.; Cano, A.; Albuquerque, B.W.; Vriesendorp, C.; Correa, D.F.; Torre, E.V.; van der Heijden, G.; Ramirez-Angulo, H.; Ramos, J.F.; Young, K.R.; Rocha, M.; Nascimento, M.T.; Medina, M.N.U.; Tirado, M.; Wang, O.; Sierra, R.; Torres-Lezama, A.; Mendoza, C.; Ferreira, C.; Baider, C.; Villarroel, D.; Balslev, H.; Mesones, I.; Giraldo, L.E.U.; Casas, L.F.; Reategui, M.A.A.; Linares-Palomino, R.; Zagt, R.; Cárdenas, S.; Farfan-Rios, W.; Sampaio, A.F.; Pauletto, D.; Sandoval, E.H.V.; Arevalo, F.R.; Huamantupa-Chuquimaco, I.; Garcia-Cabrera, K.; Hernandez, L.; Gamarra, L.V.; Alexiades, M.N.; Pansini, S.; Cuenca, W.P.; Milliken, W.; Ricardo, J.; Lopez-Gonzalez, G.; Pos, E.; ter Steege, H. |
| Title |
Species Distribution Modelling: Contrasting presence-only models with plot abundance data |
Type |
Journal Article |
| Year |
2018 |
Publication |
Scientific Reports |
Abbreviated Journal |
Sci. Rep. |
| Volume |
8 |
Issue |
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Species distribution models (SDMs) are widely used in ecology and conservation. Presence-only SDMs such as MaxEnt frequently use natural history collections (NHCs) as occurrence data, given their huge numbers and accessibility. NHCs are often spatially biased which may generate inaccuracies in SDMs. Here, we test how the distribution of NHCs and MaxEnt predictions relates to a spatial abundance model, based on a large plot dataset for Amazonian tree species, using inverse distance weighting (IDW). We also propose a new pipeline to deal with inconsistencies in NHCs and to limit the area of occupancy of the species. We found a significant but weak positive relationship between the distribution of NHCs and IDW for 66% of the species. The relationship between SDMs and IDW was also significant but weakly positive for 95% of the species, and sensitivity for both analyses was high. Furthermore, the pipeline removed half of the NHCs records. Presence-only SDM applications should consider this limitation, especially for large biodiversity assessments projects, when they are automatically generated without subsequent checking. Our pipeline provides a conservative estimate of a species’ area of occupancy, within an area slightly larger than its extent of occurrence, compatible to e.g. IUCN red list assessments. |
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2045-2322 |
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EcoFoG @ webmaster @ Gomes2018 |
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789 |
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