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Author (up) Legeay, J.; Husson, C.; Boudier, B.; Louisanna, E.; Baraloto, C.; Schimann, H.; Marcais, B.; Buée, M. doi  openurl
  Title Surprising low diversity of the plant pathogen Phytophthora in Amazonian forests Type Journal Article
  Year 2020 Publication Environmental Microbiology Abbreviated Journal Environ. Microbiol.  
  Volume 22 Issue 12 Pages 5019-5032  
  Keywords  
  Abstract The genus Phytophthora represents a group of plant pathogens with broad global distribution. The majority of them cause the collar and root-rot of diverse plant species. Little is known about Phytophthora communities in forest ecosystems, especially in the Neotropical forests where natural enemies could maintain the huge plant diversity via negative density dependence. We characterized the diversity of soil-borne Phytophthora communities in the North French Guiana rainforest and investigated how they are structured by host identity and environmental factors. In this little-explored habitat, 250 soil cores were sampled from 10 plots hosting 10 different plant families across three forest environments (Terra Firme, Seasonally Flooded and White Sand). Phytophthora diversity was studied using a baiting approach and metabarcoding (High-Throughput Sequencing) on environmental DNA extracted from both soil samples and baiting-leaves. These three approaches revealed very similar communities, characterized by an unexpected low diversity of Phytophthora species, with the dominance of two cryptic species close to Phytophthora heveae. As expected, the Phytophthora community composition of the French Guiana rainforest was significantly impacted by the host plant family and environment. However, these plant pathogen communities are very small and are dominated by generalist species, questioning their potential roles as drivers of plant diversity in these Amazonian forests. © 2020 Society for Applied Microbiology and John Wiley & Sons Ltd.  
  Address International Center for Tropical Botany, Department of Biological Sciences, Florida International University, Miami, FL 33199, United States  
  Corporate Author Thesis  
  Publisher Blackwell Publishing Ltd Place of Publication Editor  
  Language Summary Language Original Title  
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  ISSN 14622912 (Issn) ISBN Medium  
  Area Expedition Conference  
  Notes Approved no  
  Call Number EcoFoG @ webmaster @ Serial 940  
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Author (up) Leguet, A.; Gibernau, M.; Shintu, L.; Caldarelli, S.; Moja, S.; Baudino, S.; Caissard, J.-C. url  openurl
  Title Evidence for early intracellular accumulation of volatile compounds during spadix development in Arum italicum L. and preliminary data on some tropical Aroids Type Journal Article
  Year 2014 Publication Naturwissenschaften Abbreviated Journal Naturwissenschaften  
  Volume 101 Issue 8 Pages 623-635  
  Keywords Araceae; Cytochemistry; Gas chromatography; Nuclear magnetic resonance; Volatile compounds  
  Abstract Staining and histochemistry of volatile organic compounds (VOCs) were performed at different inflorescence developmental stages on nine aroid species; one temperate, Arum italicum and eight tropical from the genera Caladium, Dieffenbachia and Philodendron. Moreover, a qualitative and quantitative analysis of VOCs constituting the scent of A. italicum, depending on the stage of development of inflorescences was also conducted. In all nine species, vesicles were observed in the conical cells of either the appendix or the stamens (thecae) and the staminodes. VOCs were localised in intracellular vesicles from the early stages of inflorescence development until their release during receptivity of gynoecium. This localisation was observed by the increase of both number and diameter of the vesicles during 1 week before receptivity. Afterwards, vesicles were fewer and smaller but rarely absent. In A. italicum, staining and gas chromatography analyses confirmed that the vesicles contained terpenes. The quantitatively most important ones were the sesquiterpenes, but monoterpenes were not negligible. Indeed, the quantities of terpenes matched the vesicles' size evolution during 1 week. Furthermore, VOCs from different biosynthetic pathways (sesquiterpenes and alkanes) were at their maximum quantity 2 days before gynoecium receptivity (sesquiterpenes and alkanes) or during receptivity (isobutylamine, monoterpenes, skatole and p-cresol). VOCs seemed to be emitted during gynoecium receptivity and/or during thermogenesis, and FADs are accumulated after thermogenesis in the spadix. These complex dynamics of the different VOCs could indicate specialisation of some VOCs and cell machinery to attract pollinators on the one hand and to repulse/protect against phytophagous organisms and pathogens after pollination on the other hand. © 2014 Springer-Verlag Berlin Heidelberg.  
  Address CNRS, UMR-6134 SPE, 20000 Ajaccio, France  
  Corporate Author Thesis  
  Publisher Springer Verlag Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
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  ISSN 00281042 (Issn) ISBN Medium  
  Area Expedition Conference  
  Notes Export Date: 1 September 2014; Coden: Natwa; Correspondence Address: Gibernau, M.; CNRS, UMR-6134 SPE, 20000 Ajaccio, France; email: gibernau@univ-corse.fr Approved no  
  Call Number EcoFoG @ webmaster @ Serial 558  
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Author (up) Lehnebach, R.; Beyer, R.; Letort, V.; Heuret, P. pdf  doi
openurl 
  Title The pipe model theory half a century on: a review Type Journal Article
  Year 2018 Publication Annals of Botany Abbreviated Journal  
  Volume 121 Issue 5 Pages 773-795  
  Keywords  
  Abstract BackgroundMore than a half century ago, Shinozaki et al. (Shinozaki K, Yoda K, Hozumi K, Kira T. 1964a. A quantitative analysis of plant form – the pipe model theory. I. Basic analyses. Japanese Journal of Ecology B: 97–105) proposed an elegant conceptual framework, the pipe model theory (PMT), to interpret the observed linear relationship between the amount of stem tissue and corresponding supported leaves. The PMT brought a satisfactory answer to two vividly debated problems that were unresolved at the moment of its publication: (1) What determines tree form and which rules drive biomass allocation to the foliar versus stem compartments in plants? (2) How can foliar area or mass in an individual plant, in a stand or at even larger scales be estimated? Since its initial formulation, the PMT has been reinterpreted and used in applications, and has undoubtedly become an important milestone in the mathematical interpretation of plant form and functioning.ScopeThis article aims to review the PMT by going back to its initial formulation, stating its explicit and implicit properties and discussing them in the light of current biological knowledge and experimental evidence in order to identify the validity and range of applicability of the theory. We also discuss the use of the theory in tree biomechanics and hydraulics as well as in functional–structural plant modelling.ConclusionsScrutinizing the PMT in the light of modern biological knowledge revealed that most of its properties are not valid as a general rule. The hydraulic framework derived from the PMT has attracted much more attention than its mechanical counterpart and implies that only the conductive portion of a stem cross-section should be proportional to the supported foliage amount rather than the whole of it. The facts that this conductive portion is experimentally difficult to measure and varies with environmental conditions and tree ontogeny might cause the commonly reported non-linear relationships between foliage and stem metrics. Nevertheless, the PMT can still be considered as a portfolio of properties providing a unified framework to integrate and analyse functional–structural relationships.  
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  ISSN 0305-7364 ISBN Medium  
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  Notes 10.1093/aob/mcx194 Approved no  
  Call Number EcoFoG @ webmaster @ Serial 801  
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Author (up) Lehnebach, R.; Beyer, R.; Letort, V.; Heuret, P. doi  openurl
  Title Corrigendum: The pipe model theory half a century on: A review (Annals of Botany DOI: 10.1093/aob/mcx194) Type Journal Article
  Year 2018 Publication Annals of Botany Abbreviated Journal Annals of Botany  
  Volume 121 Issue 7 Pages 1427  
  Keywords  
  Abstract There was an error in the affiliations of Véronique Letort. The correct affiliation is Laboratory of Mathematics in Interaction with Computer Science (MICS), CentraleSupélec, France The online paper has been corrected.  
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  Notes Export Date: 16 July 2018 Approved no  
  Call Number EcoFoG @ webmaster @ Serial 810  
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Author (up) Lehnebach, R.; Bossu, J.; Va, S.; Morel, H.; Amusant, N.; Nicolini, E.; Beauchene, J. pdf  url
doi  openurl
  Title Wood density variations of legume trees in French Guiana along the shade tolerance continuum: Heartwood effects on radial patterns and gradients Type Journal Article
  Year 2019 Publication Forests Abbreviated Journal Forests  
  Volume 10 Issue 2 Pages  
  Keywords French Guiana; Growth-mortality rate; Heartwood; Heartwood extractives; Legumes; Sapwood; Shade tolerance; Tropical tree species; Wood density variations  
  Abstract Increasing or decreasing wood density (WD) from pith to bark is commonly observed in tropical tree species. The different types of WD radial variations, long been considered to depict the diversity of growth and mechanical strategies among forest guilds (heliophilic vs. shade-tolerant), were never analyzed in the light of heartwood (HW) formation. Yet, the additional mass of chemical extractives associated to HW formation increases WD and might affect both WD radial gradient (i.e., the slope of the relation between WD and radial distance) and pattern (i.e., linear or nonlinear variation). We studied 16 legumes species from French Guiana representing a wide diversity of growth strategies and positions on the shade-tolerance continuum. Using WD measurements and available HW extractives content values, we computed WD corrected by the extractive content and analyzed the effect of HW on WD radial gradients and patterns. We also related WD variations to demographic variables, such as sapling growth and mortality rates. Regardless of the position along the shade-tolerance continuum, correcting WD gradients reveals only increasing gradients. We determined three types of corrected WD patterns: (1) the upward curvilinear pattern is a specific feature of heliophilic species, whereas (2) the linear and (3) the downward curvilinear patterns are observed in both mid- and late-successional species. In addition, we found that saplings growth and mortality rates are better correlated with the corrected WD at stem center than with the uncorrected value: taking into account the effect of HW extractives on WD radial variations provides unbiased interpretation of biomass accumulation and tree mechanical strategies. Rather than a specific feature of heliophilic species, the increasing WD gradient is a shared strategy regardless of the shade tolerance habit. Finally, our study stresses to consider the occurrence of HW when using WD.  
  Address Ecology of Guianan Forests (EcoFoG), AgroParisTech, French Agricultural Research and International Cooperation Organization (CIRAD), French National Centre for Scientific Research (CNRS), French National Institute for Agricultural Research (INRA), Université des Antilles, Université de Guyane, Kourou, French Guiana, 97310, France  
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  Publisher Mdpi Ag Place of Publication Editor  
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  ISSN 19994907 (Issn) ISBN Medium  
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  Notes Export Date: 1 February 2019; Correspondence Address: Lehnebach, R.; Laboratory of Botany and Modeling of Plant Architecture and Vegetation (AMAP), French Agricultural Research and International Cooperation Organization (CIRAD)France; email: romain.lehnebach@cirad.fr; Funding details: Agence Nationale de la Recherche, ANR; Funding details: Federación Española de Enfermedades Raras, FEDER; Funding text 1: The authors thank Grégoire Vincent, Jean-François Molino, and Daniel Sabatier for providing demographical data.). The French Agricultural Research Centre for International Development (CIRAD) funded Romain Lehnebach PhD scholarship. This research project was also funded by the European Regional Development Fund (FEDER, no 31703) and benefits from an 'Investissements d'Avenir' grant managed by the French National Research Agency (CEBA, ref. 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Author (up) Lehnebach, R.; Doumerc, L.; Clair, B.; Alméras, T. url  doi
openurl 
  Title Mechanical stress in the inner bark of 15 tropical tree species and the relationship with anatomical structure Type Journal Article
  Year 2020 Publication Botany Abbreviated Journal Bot.  
  Volume 98 Issue 1 Pages 1-8  
  Keywords Bark anatomical structure; Mechanical stress; Sclereids; Secondary phloem; Tree biomechanics; Tropical species  
  Abstract Recent studies have shown that the inner bark is implicated in the postural control of inclined tree stems through the interaction between wood radial growth and tangential expansion of a trellis fiber network in bark. Assessing the taxonomic extent of this mechanism requires a screening of the diversity in bark anatomy and mechanical stress. The mechanical state of bark was measured in 15 tropical tree species from various botanical families on vertical mature trees, and related to the anatomical structure of the bark. Significant tensile or compressive longitudinal stresses were observed in the stems of most species. Tensile longitudinal stress was observed in various botanical families and was always associated with fibers arranged in a trellis-like structure and strong dilatation of rays. The highest tensile stress was recorded in species with gelatinous fibers forming a treillis. Compressive stress was typically associated with a large amount of sclereids in the bark, supporting the differentiation of sclereids as a potential origin of the generation of longitudinal compressive stresses in bark. In species exhibiting both a fibrous trellis structure and a significant amount of sclereids, the sign of longitudinal stress may depend on the balance between these two mechanisms.  
  Address Faculty of Bioscience Engineering, Laboratory of Wood Technology, Woodlab, Coupure Links 653, Gent, B-9000, Belgium  
  Corporate Author Thesis  
  Publisher Canadian Science Publishing Place of Publication Editor  
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  ISSN 19162804 (Issn) ISBN Medium  
  Area Expedition Conference  
  Notes Cited By :1; Export Date: 20 January 2020; Correspondence Address: Lehnebach, R.; Laboratoire de Mécanique et Génie Civil (LMGC), Université de Montpellier, CNRS, 860 rue de St. Priest, France; email: lehnebach.romain@hotmail.fr Approved no  
  Call Number EcoFoG @ webmaster @ Serial 913  
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Author (up) Lehnebach, R.; Morel, H.; Bossu, J.; Le Moguédec, G.; Amusant, N.; Beauchene, J.; Nicolini, E. url  doi
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  Title Heartwood/sapwood profile and the tradeoff between trunk and crown increment in a natural forest: the case study of a tropical tree (Dicorynia guianensis Amsh., Fabaceae) Type Journal Article
  Year 2017 Publication Trees – Structure and Function Abbreviated Journal Trees – Structure and Function  
  Volume 31 Issue 1 Pages 199-214  
  Keywords Dicorynia guianensis; Growth allocation; Heartwood; Ontogeny; Sapwood; Tropical tree  
  Abstract Key message: Sapwood area and the radial growth rate of the trunk follow the same pattern at breast height, with an initial increase and subsequent constant value, resulting from the increasing growth allocation toward the crown rather than tree decline. Heartwood area and heartwood volume in the trunk increase more rapidly after this shift occurs. Abstract: Sapwood (SW) and heartwood (HW) are two functionally distinct classifications of wood in perennial stems for which quantities can vary greatly in tropical trees. Numerous positive correlations have been found between the radial growth rate (RGR) and SW quantity; however, variations in the SW/HW quantities have not been studied in light of the ontogenetic variation of RGR. Wood core sampling, intensive measurements of tree structure (number of branches, stem volumes), and radial growth monitoring were performed on an abundant and highly exploited tree species in French Guiana (Dicorynia guianensis) to investigate the relationship between RGR, SW/HW quantity, tree structure, and their variations on the course of a tree’s ontogeny. SW area and RGR followed the same pattern of variation throughout tree development, both increasing first and reaching a steady state after 50 cm DBH (diameter at breast height). After this value, we observed a strong increase in both the HW area and HW volume increment, concomitant with a more rapid increase in crown volume. The stabilization of RGR for trees with DBH > 50 cm was related not to a tree’s decline but rather to an increasing wood allocation to the crown, confirming that RGR at breast height is a poor indicator of whole-tree growth for bigger individuals. We also confirmed that HW formation is an ontogenetic process managing SW quantity that is continuously and increasingly produced within the crown as the tree grows. This study highlights the effect of growth-mediated ontogenetic changes on the localization of water and carbohydrate storage within a tree, resulting from SW and HW dynamics throughout tree ontogeny. © 2016, Springer-Verlag Berlin Heidelberg.  
  Address CIRAD, UMR EcoFoG, BP701, Kourou Cedex, French Guiana  
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  Notes Export Date: 19 February 2017 Approved no  
  Call Number EcoFoG @ webmaster @ Serial 733  
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Author (up) Lehours, A.-C.; Jeune, A.-H.L.; Aguer, J.-P.; Céréghino, R.; Corbara, B.; Kéraval, B.; Leroy, C.; Perrière, F.; Jeanthon, C.; Carrias, J.-F. doi  openurl
  Title Unexpectedly high bacteriochlorophyll a concentrations in neotropical tank bromeliads Type Journal Article
  Year 2016 Publication Environmental Microbiology Reports Abbreviated Journal Environmental Microbiology Reports  
  Volume 8 Issue 5 Pages 689-698  
  Keywords  
  Abstract The contribution of bacteriochlorophyll a (BChl a) to photosynthetically driven electron transport is generally low in aquatic and terrestrial systems. Here, we provide evidence that anoxygenic bacterial phototrophy is widespread and substantial in water retained by tank bromeliads of a primary rainforest in French Guiana. An analysis of the water extracted from 104 randomly selected tank bromeliads using infrared fluorimetry suggested the overall presence of abundant anoxygenic phototrophic bacterial populations. We found that purple bacteria dominated these populations responsible for unusually high BChl a/chlorophyll a ratios (>50%). Our data suggest that BChl a-based phototrophy in tank bromeliads can have significant effects on the ecology of tank-bromeliad ecosystems and on the carbon and energy fluxes in Neotropical forests.  
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  ISSN 1758-2229 ISBN Medium  
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  Call Number EcoFoG @ webmaster @ Serial 709  
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Author (up) Leitão, R.P.; Zuanon, J.; Villéger, S.; Williams, S.E.; Baraloto, C.; Fortunel, C.; Mendonça, F.P.; Mouillot, D. doi  openurl
  Title Rare species contribute disproportionately to the functional structure of species assemblages Type Journal Article
  Year 2016 Publication Proceedings of the Royal Society B: Biological Sciences Abbreviated Journal Proceedings of the Royal Society B: Biological Sciences  
  Volume 283 Issue 1828 Pages  
  Keywords Conservation; Extinction; Functional diversity; Null models; Rarity index; Tropical biodiversity  
  Abstract There is broad consensus that the diversity of functional traits within species assemblages drives several ecological processes. It is also widely recognized that rare species are the first to become extinct following human-induced disturbances. Surprisingly, however, the functional importance of rare species is still poorly understood, particularly in tropical species-rich assemblages where the majority of species are rare, and the rate of species extinction can be high. Here, we investigated the consequences of local and regional extinctions on the functional structure of species assemblages. We used three extensive datasets (stream fish from the Brazilian Amazon, rainforest trees from French Guiana, and birds from the Australian Wet Tropics) and built an integrative measure of species rarity versuscommonness, combining local abundance, geographical range, andhabitat breadth. Using different scenarios of species loss, we found a disproportionate impact of rare species extinction for the three groups, with significant reductions in levels of functional richness, specialization, and originality of assemblages, which may severely undermine the integrity of ecological processes. The whole breadth of functional abilities within species assemblages, which is disproportionately supported by rare species, is certainly critical in maintaining ecosystems particularly under the ongoing rapid environmental transitions. © 2016 The Author(s) Published by the Royal Society. All rights reserved.  
  Address Instituto Federal de Educação, Ciência e Tecnologia, Presidente Figueiredo, Brazil  
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  Notes Export Date: 7 May 2016 Approved no  
  Call Number EcoFoG @ webmaster @ Serial 676  
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Author (up) Lenoir, A.; Boulay, R.; Dejean, A.; Touchard, A.; Cuvillier-Hot, V. doi  openurl
  Title Phthalate pollution in an Amazonian rainforest Type Journal Article
  Year 2016 Publication Environmental Science and Pollution Research Abbreviated Journal  
  Volume 23 Issue 16 Pages 16865-16872  
  Keywords  
  Abstract Phthalates are ubiquitous contaminants and endocrine-disrupting chemicals that can become trapped in the cuticles of insects, including ants which were recognized as good bioindicators for such pollution. Because phthalates have been noted in developed countries and because they also have been found in the Arctic, a region isolated from direct anthropogenic influence, we hypothesized that they are widespread. So, we looked for their presence on the cuticle of ants gathered from isolated areas of the Amazonian rainforest and along an anthropogenic gradient of pollution (rainforest vs. road sides vs. cities in French Guiana). Phthalate pollution (mainly di(2-ethylhexyl) phthalate (DEHP)) was higher on ants gathered in cities and along road sides than on those collected in the pristine rainforest, indicating that it follows a human-mediated gradient of disturbance related to the use of plastics and many other products that contain phthalates in urban zones. Their presence varied with the ant species; the cuticle of Solenopsis saevissima traps higher amount of phthalates than that of compared species. However, the presence of phthalates in isolated areas of pristine rainforests suggests that they are associated both with atmospheric particles and in gaseous form and are transported over long distances by wind, resulting in a worldwide diffusion. These findings suggest that there is no such thing as a “pristine” zone.  
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  ISSN 1614-7499 ISBN Medium  
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  Notes Approved no  
  Call Number EcoFoG @ webmaster @ Lenoir2016 Serial 700  
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