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Céréghino, R.; Corbara, B.; Leroy, C.; Carrias, J.-F. |
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Ecological determinants of community structure across the trophic levels of freshwater food webs: a test using bromeliad phytotelmata |
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Journal Article |
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2020 |
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Hydrobiologia |
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Hydrobiologia |
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847 |
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2 |
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391-402 |
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Environmental filtering; Functional group; Neotropical; Niche; Trophic interactions; alga; assembly rule; bacterium; community structure; ecological modeling; environmental conditions; food web; freshwater ecosystem; functional group; Neotropic Ecozone; niche; protozoan; taxonomy; trophic interaction; trophic level; algae; Invertebrata; Protozoa |
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Understanding the relative importance of habitat and biotic drivers on community assembly across food web components is an important step towards predicting the consequences of environmental changes. Because documenting entire food webs is often impractical, this question has been only partially investigated. Here, we partitioned variation in species assemblages of the major components of tank bromeliad food webs (bacteria, algae, protozoans, detritivorous and predatory invertebrates) into habitat and biotic determinants and examined the influence of habitat variables and predator or prey abundance on all taxonomic assemblages. Ecological determinism of assemblage structure ranged from weak in bacteria (< 10% of the explained variance) to strong in predatory invertebrates (90%). Habitat features and canopy openness significantly influenced species assemblages; however, prey or predator density had far and away the most significant structuring effects. If biotic forces are at least as important as the abiotic forces while the importance of stochasticity declines towards upper trophic levels, then trophic levels could respond differently to natural or anthropogenic disturbance and to shifts in species distributions. The effects of such differential responses on food web reconfiguration, however, remain to be elucidated. © 2019, Springer Nature Switzerland AG. |
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UMR EcoFoG (AgroParisTech, CIRAD, CNRS, INRA, Université de Guyane, Université des Antilles), Kourou, 97310, France |
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00188158 (Issn) |
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EcoFoG @ webmaster @ |
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996 |
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Letort, V.; Heuret, P.; Zalamea, P.-C.; De Reffye, P.; Nicolini, E. |
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Analysing the effects of local environment on the source-sink balance of Cecropia sciadophylla: A methodological approach based on model inversion |
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Journal Article |
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2012 |
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Annals of Forest Science |
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Ann. Forest Sci. |
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69 |
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2 |
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167-180 |
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Cecropia; Functional-structural model; Model inversion; Morphology; Trophic competition |
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Context Functional-structural models (FSM) of tree growth have great potential in forestry, but their development, calibration and validation are hampered by the difficulty of collecting experimental data at organ scale for adult trees. Due to their simple architecture and morphological properties, “model plants” such as Cecropia sciadophylla are of great interest to validate new models and methodologies, since exhaustive descriptions of their plant structure and mass partitioning can be gathered. Aims Our objective was to develop a model-based approach to analysing the influence of environmental conditions on the dynamics of trophic competition within C. sciadophylla trees. Methods We defined an integrated environmental factor that includes meteorological medium-frequency variations and a relative index representing the local site conditions for each plant. This index is estimated based on model inversion of the GreenLab FSM using data from 11 trees for model calibration and 7 trees for model evaluation. Results The resulting model explained the dynamics of biomass allocation to different organs during the plant growth, according to the environmental pressure they experienced. Perspectives By linking the integrated environmental factor to a competition index, an extension of the model to the population level could be considered. © INRA and Springer Science+Business Media B.V. 2011. |
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UMR ECOFOG Campus Agronomique, INRA, BP 316, 97379 Kourou cedex, French Guiana |
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12864560 (Issn) |
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Cited By (since 1996): 1; Export Date: 20 June 2012; Source: Scopus; Coden: Afosf; doi: 10.1007/s13595-011-0131-x; Language of Original Document: English; Correspondence Address: Letort, V.; Department of Applied Mathematics and Systems (MAS), Ecole Centrale Paris, Grande voie des Vignes, Chatenay-Malabry 92295, France; email: veronique.letort@centraliens.net |
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EcoFoG @ webmaster @ |
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405 |
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Buckland, S.T.; Yuan, Y.; Marcon, E. |
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Title |
Measuring temporal trends in biodiversity |
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Journal Article |
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2017 |
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AStA Advances in Statistical Analysis |
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AStA Advances in Statistical Analysis |
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101 |
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4 |
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461-474 |
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Biodiversity measures; Diversity profiles; Geometric mean; Species similarity; Turnover measures |
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In 2002, nearly 200 nations signed up to the 2010 target of the Convention for Biological Diversity, ‘to significantly reduce the rate of biodiversity loss by 2010’. To assess whether the target was met, it became necessary to quantify temporal trends in measures of diversity. This resulted in a marked shift in focus for biodiversity measurement. We explore the developments in measuring biodiversity that was prompted by the 2010 target. We consider measures based on species proportions, and also explain why a geometric mean of relative abundance estimates was preferred to such measures for assessing progress towards the target. We look at the use of diversity profiles, and consider how species similarity can be incorporated into diversity measures. We also discuss measures of turnover that can be used to quantify shifts in community composition arising, for example, from climate change. © 2017, The Author(s). |
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UMR EcoFoG, AgroParisTech, Campus Agronomique, BP 316, Kourou, French Guiana, France |
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Cited By :1; Export Date: 2 November 2017 |
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EcoFoG @ webmaster @ |
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769 |
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Guitet, S.; Pélissier, R.; Brunaux, O.; Jaouen, G.; Sabatier, D. |
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Geomorphological landscape features explain floristic patterns in French Guiana rainforest |
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Journal Article |
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2015 |
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Biodiversity and Conservation |
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Biodiversity and Conservation |
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24 |
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5 |
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1215-1237 |
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Geodiversity; Geomorphology; Landscapes; Species distribution; Tree community |
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Geomorphic landscape features have been suggested as indicators of forest diversity. However, their explanatory power has not yet been explicitly tested at a regional scale in tropical rainforest. We used forest inventories conducted according to a stratified sampling design (3,132 plots in 111 transects at 33 sites) and holistic multi-scale geomorphological mapping derived from a Shuttle Radar Topography Mission digital elevation model to describe and explain spatial patterns in floristic composition across French Guiana (80,000 km2). We measured and identified 123,906 trees with DBH ≥20 cm and used constrained and unconstrained ordinations to analyze variations in the abundance of 221 taxa and 51 families. Variance partitioning and variograms were used to detect spatial patterns in species composition, compare the explanatory power of spatial and environmental factors, and select the variables that best explain forest composition. Strong floristic patterns corresponded to a major latitudinal gradient and significant sub-regional floristic structure. Geomorphological landscapes shaped by historic climate fluctuations and major geological events successfully captured these patterns and explained the variation in abundance of 80 taxa, corresponding to 65 % of the inventoried trees. Our findings suggest that long-term forest dynamics are under substantial “geomorphographic control”. A geomorphological perspective on landscapes that incorporates current and past environmental filters and historical biogeographical processes could thus be used more systematically in tropical regions for regional planning and forest conservation. © 2014, Springer Science+Business Media Dordrecht. |
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UMR EcoFoG, AgroParisTech, Campus agronomique, Guyane Française, BP 316, Kourou, France |
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Export Date: 8 September 2015 |
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EcoFoG @ webmaster @ |
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620 |
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Fromin, N.; Porte, B.; Lensi, R.; Hamelin, J.; Domenach, A.-M.; Buatois, B.; Roggy, J.-C. |
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Spatial variability of the functional stability of microbial respiration process: A microcosm study using tropical forest soil |
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Journal Article |
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2012 |
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Journal of Soils and Sediments |
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J. Soils Sed. |
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12 |
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7 |
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1030-1039 |
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Disturbance; Diversity-stability relationship; Microbial diversity; Substrate-induced respiration |
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Purpose: Understanding the ability of ecosystem processes to resist to and to recover from disturbances is critical to sustainable land use. However, the spatial variability of the stability has rarely been addressed. Here, we investigated the functional stability of a soil microbial process for 24 soils collected from adjacent locations from a 0. 3 ha tropical rainforest plot in Paracou, French Guiana. Materials and methods: The 24 locations were characterized regarding soil chemical and biological (microbial diversity) parameters and forest structure. The corresponding soils were submitted to an experimental transient heat disturbance during a microcosm experiment. The response of the respiration process was followed using substrate-induced respiration (SIR). Results and discussion: The response of soil SIR to heat disturbance varied widely between samples. The variability of the SIR response increased just after the disturbance, and a global rather homogeneous decrease in SIR rates was observed 15 and 30 days after. The stability of SIR in response to heat disturbance could not be related to either the genetic or the metabolic diversity of the microbial community. The initial level of SIR before the disturbance was the soil variable that best correlated with the impact of the disturbance: the soil locations with the highest initial SIR rates were the most affected 15 and 30 days after the heat disturbance. Conclusions: Such a heterogeneous response suggests that the response of soil processes to a disturbance will be difficult to assess from only local-scale analyses and highlights the need for spatial explicitness in understanding biogeochemical processes. © 2012 Springer-Verlag. |
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UMR EcoFoG, BP 709, 97387 Kourou, French Guiana |
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14390108 (Issn) |
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Export Date: 30 July 2012; Source: Scopus; doi: 10.1007/s11368-012-0528-7; Language of Original Document: English; Correspondence Address: Fromin, N.; CEFE, CNRS UMR 5175, 1919 Route de Mende, 34293 Montpellier cedex 5, France; email: nathalie.fromin@cefe.cnrs.fr |
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EcoFoG @ webmaster @ |
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415 |
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Fromin, N.; Saby, N.P.A.; Lensi, R.; Brunet, D.; Porte, B.; Domenach, A.-M.; Roggy, J.-C. |
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Spatial variability of soil microbial functioning in a tropical rainforest of French Guiana using nested sampling |
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2013 |
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Geoderma |
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197-198 |
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98-107 |
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Denitrification; Respiration; Scale dependent process; Soil microbial processes; Soil organic matter; Tree influence potential |
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Understanding the pattern in spatial distribution of soil microbial processes is critical to understand the environmental factors that regulate them as well as to scale up these processes to ecosystem. Soil samples from a 1. ha tropical rainforest plot (Paracou, French Guiana) were analyzed according a nested sampling approach using different separation distances ranging from 0.4 to 40. m. The variability of substrate induced respiration (SIR) and of denitrification enzyme activity (DEA) was characterized in relation to various soil properties (total C and N contents, NIRS related index of soil organic matter quality, SOMQ, and index of tree influence potential, IP). The variability of SIR and DEA was higher than that of environmental properties. The patterns of accumulated variance as a function of distance varied among the soil properties. The variability of SIR and DEA mainly occurred at small (1. m) scale (and at the 10-40. m-scales for SIR), probably reflecting the quality of litter input that results of the influence of local assemblage of different tree species, though changes in the soil N and C contents. Indeed, total soil C and N contents explained the microbial properties at every scale. Coefficients of codispersion showed that neither SOMQ nor IP did correlate with SIR and DEA, and confirmed that total C and N contents explained microbial properties in a scale dependent and complex manner. Such spatial dependency underlines the importance of soil heterogeneity in this tropical forest with implications for sampling strategies when studying the microbial processes and their response to disturbances. © 2012 Elsevier B.V. |
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UMR EcoFoG, BP 709, 97387 Kourou, GUF, France |
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Export Date: 13 February 2013; Source: Scopus |
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EcoFoG @ webmaster @ |
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466 |
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Nirma, C.; Eparvier, V.; Stien, D. |
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Antifungal agents from Pseudallescheria boydii SNB-CN73 isolated from a nasutitermes sp. termite |
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2013 |
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Journal of Natural Products |
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J. Nat. Prod. |
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76 |
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5 |
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988-991 |
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Defense mutualisms between social insects and microorganisms have been described in the literature. The present article describes the discovery of a Pseudallescheria boydii strain isolated from Nasutitermes sp. The microbial symbiont produces two antifungal metabolites: tyroscherin and N-methyltyroscherin, a compound not previously described in the literature. Methylation of tyroscherin has confirmed the structure of N-methyltyroscherin. Both compounds are effective antifungal agents with favorable selectivity indices for Candida albicans and Trichophyton rubrum. © 2013 The American Chemical Society and American Society of Pharmacognosy. |
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UMR Ecofog, Institut Pasteur de la Guyane, Université des Antilles et de la Guyane, 23 Avenue Pasteur, 97306 Cayenne, France |
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01633864 (Issn) |
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Export Date: 6 June 2013; Source: Scopus; Coden: Jnprd; :doi 10.1021/np4001703; Language of Original Document: English; Correspondence Address: Eparvier, V.; CNRS, Institut de Chimie des Substances Naturelles, UPR 2301, 1 Avenue de la Terrasse, 91198 Gif-sur-Yvette, France; email: veronique.eparvier@icsn.cnrs-gif.fr |
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EcoFoG @ webmaster @ |
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491 |
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Bereau, M.; Bonal, D.; Louisanna, E.; Garbaye, J. |
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Do mycorrhizas improve tropical tree seedling performance under water stress and low light conditions? A case study with Dicorynia guianensis (Caesalpiniaceae) |
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2005 |
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Journal of Tropical Ecology |
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J. Trop. Ecol. |
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21 |
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375-381 |
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French Guiana; leaf gas exchange; mycorrhizal symbiosis; tropical forest; water limitation |
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We tested the response of seedlings of Diconyina guianensis, a major timber tree species of French Guiana, to mycorrhizal symbiosis and water limitation in a semi-con trolled experiment under natural light conditions. Under well-watered conditions, mycorrhizal colonization resulted in an increase of net photosynthesis, growth and phosphorus uptake. When submitted to water stress, no growth reduction of mycorrhizal seedlings was observed. Mycorrhizal seedlings were more sensitive to drought than non-mycorrhizal ones in terms of carbon assimilation, but not with regard to stomatal closure. In contrast to previous studies on temperate tree seedlings, this result precludes a mycorrhizal effect on the hydraulic properties of this species. Furthermore, our results suggest that below a specific threshold of soil moisture, carbon assimilation of D. guianensis seedlings was decreased by the mycorrhizal symbiosis. This is probably related to the competition between the plant and its host fungus for carbon allocation under low light intensity, even though it did not seem to have a significant effect on mortality in our experiment. |
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UMR Ecofog, Kourou 97387, French Guiana, Email: bercau.m@kourou.cirad.fr |
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CAMBRIDGE UNIV PRESS |
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0266-4674 |
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ISI:000231009300003 |
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EcoFoG @ eric.marcon @ |
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232 |
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Schimann, H.; Joffre, R.; Roggy, J.C.; Lensi, R.; Domenach, A.M. |
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Evaluation of the recovery of microbial functions during soil restoration using near-infrared spectroscopy |
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2007 |
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Applied Soil Ecology |
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Appl. Soil Ecol. |
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37 |
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3 |
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223-232 |
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NIRS; microbial activities; respiration; denitrification; carbon; nitrogen; soil functioning; restoration |
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Microbial-based indicators, such as C and N contents or microbial functions involved in C and N cycles, are currently used to describe the status of soils in disturbed areas. Microbial functions are more accurate indicators but their measurement for studies at the ecosystem level remains problematical because of the huge spatial variability of these processes and, consequently, of the large number of soil samples which must be analyzed. Our goal was to test the capacity of near-infrared reflectance spectroscopy (NIRS) to predict respiration and denitrification but also carbon and nitrogen contents of soils submitted to various procedures of restoration. To achieve this objective, we took advantage of an experiment conducted on a reforestation system established after open-cast gold mining in French Guiana. In this experimental station, plantations of various ages and various soil textures were at our disposal. Our results showed that both plantations and soil texture had a strong impact on the recovery of soil functioning: carbon and nitrogen contents, respiration and denitrification increased with age of plantation and clay content. Calibrations were performed between spectral data and microbial-based indicators using partial least squares regression (PLS). The results showed that C and N contents were accurately predicted. Microbial functions were less precisely predicted with results more accurate on clayey soils than on sandy soils. In clayey soils, perturbed or restored soils and the year of plantation were discriminated very efficiently through principal component analyses of spectral signatures (over 80% of variance explained on the first two axes). Near-infrared spectroscopy may thus be extended to the prediction of functional soil parameters, but the capacity of this method must be strengthened by expending the databases with other soils in other contexts. The possibility of using NIRS provides many opportunities for understanding both the temporal dynamics and the spatial variability of the recovery of key microbial functions during soil restoration. (c) 2007 Elsevier B.V. All rights reserved. |
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UMR EcoFoG, Kourou 97387, French Guiana, Email: heidy.schimann@cirad.fr |
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ELSEVIER SCIENCE BV |
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ISI:000250668000006 |
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EcoFoG @ eric.marcon @ |
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154 |
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Ruelle, J.; Yoshida, M.; Clair, B.; Thibaut, B. |
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Peculiar tension wood structure in Laetia procera (Poepp.) Eichl. (Flacourtiaceae) |
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Journal Article |
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2007 |
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Trees-Structure and Function |
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Trees-Struct. Funct. |
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21 |
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3 |
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345-355 |
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tension wood; tropical rainforest species; UV microspectrophotometry; scanning electron microscopy; cellulose microfibril angle |
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Abstract |
Tension wood of Laetia procera (Poepp.) Eichl. (Flacourtiaceae), a neo-tropical forest species, shows a peculiar secondary wall structure, with an alternance of thick and thin layers, while opposite wood of this species has a typical secondary wall structure (S1 + S2 + S3). Samples for the study of microstructural properties were collected upon the estimation of growth stresses in the living tree, in order to analyze the correlation of the former with the latter. Investigation using optical microscopy, scanning electron microscopy and UV microspectrophotometry allowed the description of the anatomy, ultra-structure and chemistry of this peculiar polylaminate secondary wall. In the thick layers, cellulose microfibril angle is very low (i.e., microfibril orientation is close to fibre axis) and cellulose microfibrils are well organized and parallel to each other. In the thin layers, microfibrils (only observable in the inner layer) are less organized and are oriented with a large angle relative to the axis of the cell. Thick layers are lightly lignified although thin layers show a higher content of lignin, close to that of opposite wood secondary wall. The more the wood was under tensile stress, the less the secondary wall was lignified, and lower the syringyl on guaiacyl lignin units' ratio was. The innermost layer of the secondary wall looks like a typical S3 layer with large microfibril angle and lignin occurrence. The interest of this kind of structure for the understanding of stress generation is discussed. |
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UMR EcoFoG, Kourou 97387, French Guiana, Email: ruelle_j@kourou.cirad.fr |
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0931-1890 |
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ISI:000246206200009 |
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EcoFoG @ eric.marcon @ |
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163 |
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