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Bonal, D.; Born, C.; Brechet, C.; Coste, S.; Marcon, E.; Roggy, J.C.; Guehl, J.M. |
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Title |
The successional status of tropical rainforest tree species is associated with differences in leaf carbon isotope discrimination and functional traits |
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Journal Article |
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Year |
2007 |
Publication |
Annals of Forest Science |
Abbreviated Journal |
Ann. For. Sci. |
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Volume |
64 |
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2 |
Pages |
169-176 |
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Keywords |
C-13; functional diversity; leaf gas exchange; species grouping; tropical rainforest |
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Abstract |
We characterised the among species variability in leaf gas exchange and morphological traits under controlled conditions of seedlings of 22 tropical rainforest canopy species to understand the origin of the variability in leaf carbon isotope discrimination (Delta) among species with different growth and dynamic characteristics (successional gradient). Our results first suggest that these species pursue a consistent strategy in terms of. throughout their ontogeny (juveniles grown here versus canopy adult trees from the natural forest). Second, leaf Delta was negatively correlated with WUE and N, and positively correlated with g(s), but among species differences in Delta were mainly explained by differences in WUE. Finally, species belonging to different successional groups display distinct leaf functional and morphological traits. We confirmed that fast growing early successional species maximise carbon assimilation with high stomatal conductance. In contrast, fast and slow growing late successional species are both characterised by low carbon assimilation values, but by distinct stomatal conductance and leaf morphological features. Along the successional gradient, these differences result in much lower Delta for the intermediate species (i.e. fast growing late successional) as compared to the two other groups. |
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INRA Kourou, UMR Ecol Forets Guyane, F-97387 Kourou, Guyane, France, Email: damien.bonal@kourou.cirad.fr |
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EDP SCIENCES S A |
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1286-4560 |
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ISI:000244438100006 |
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EcoFoG @ eric.marcon @ |
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169 |
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Baraloto, C.; Goldberg, D.E. |
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Title |
Microhabitat associations and seedling bank dynamics in a neotropical forest |
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Journal Article |
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Year |
2004 |
Publication |
Oecologia |
Abbreviated Journal |
Oecologia |
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Volume |
141 |
Issue |
4 |
Pages |
701-712 |
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Keywords |
French Guiana; life history traits; light availability; regeneration niche; soil nutrients |
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We conducted a rigorous test of tropical tree seedling microhabitat differentiation by examining microhabitat associations, survival and growth of established seedlings of ten tropical tree species representing a four-factor gradient in seed size. Eight microhabitat variables describing soil and light conditions were measured directly adjacent to each of 588 seedlings within twelve 10 x 100 m belt transects at Paracou, French Guiana, and at 264 reference points along the transects. From these measurements, we defined three principal components describing soil richness, soil softness and canopy openness. Six of ten species ( in 9 of 30 total cases) were distributed non-randomly with respect to microhabitat along at least one principal component. However, few species demonstrated clear microhabitat specialization. All shifts in distribution relative to reference points were in the same direction ( richer, softer soil). Furthermore, of 135 pairwise comparisons among the species, only 7 were significantly different. More than three-fourths of all seedlings (75.3%) survived over the 2-year monitoring period, but survival rates varied widely among species. In no case was the probability of survival influenced by any microhabitat parameter. Relative height growth rates for the seedlings over 2 years varied from – 0.031 cm cm(-1) year(-1) (Dicorynia guianensis, Caesalpiniaceae) to 0.088 cm cm(-1) year(-1) (Virola michelii, Myristicaceae). In only 4 of 30 cases was height growth significantly associated with one of the three principal components. Because the conditions in this study were designed to maximize the chance of finding microhabitat differentiation among a group of species differing greatly in life history traits, the lack of microhabitat specialization it uncovered suggests that microhabitat partitioning among tropical tree species at the established seedling stage is unlikely to contribute greatly to coexistence among these species. |
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INRA Kourou, UMR Ecol Forets Guyane, Kourou 97387, French Guiana, Email: baraloto.c@kourou.cirad.fr |
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SPRINGER |
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0029-8549 |
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ISI:000224999800015 |
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EcoFoG @ eric.marcon @ |
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233 |
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Latouche-Hallé, C.; Ramboer, A.; Bandou, E.; Caron, H.; Kremer, A. |
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Title |
Nuclear and chloroplast genetic structure indicate fine-scale spatial dynamics in a neotropical tree population |
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Journal Article |
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Year |
2003 |
Publication |
Heredity |
Abbreviated Journal |
Heredity |
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Volume |
91 |
Issue |
2 |
Pages |
181-190 |
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Keywords |
Dicorynia guianensis; Gene flow; Genetic differentiation; Microsatellites; Spatial analysis; Tropical tree; gene flow; genetic structure; population genetics; spatial analysis; tree; tropical forest; Cell Nucleus; Chloroplasts; Cohort Studies; DNA, Plant; French Guiana; Genetic Markers; Pollen; Population Dynamics; Seeds; Trees; Variation (Genetics); French Guiana; Dicorynia guianensis; Embryophyta |
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Dicorynia guianensis is a canopy tree, endemic to the tropical rain forest of French Guiana. We compared generational and spatial genetic structure for maternally and biparentally inherited markers in two cohorts (adult and seedling) in order to infer processes shaping the distribution of genetic diversity. The study was conducted on a 40 ha study plot located at Paracou near Kourou, where 172 adults trees and 375 saplings were sampled. Aggregation of trees was therefore suggested at different distances, ranging from 100 to 400 m. There was a strong link between demographic and genetic spatial structures at small distances (less than 100 m) that is likely to be the consequence of restricted seed dispersal. Genetic differentiation was more pronounced between spatial aggregates than between cohorts. Despite the spatial differentiation, the species was able to maintain high levels of diversity for maternal genomes, suggesting rapid turnover of aggregates. Spatial autocorrelation was larger for chloroplast than nuclear markers indicating a strong asymmetry between pollen and seed flow. Fixation indices indicated a lower heterozygote deficiency for the adults, maybe because of gradual elimination of selfed trees. Genetic relatedness at lower distances was higher in adult trees than in saplings, as a result of generation overlapping in the adult cohort. Overall, our results confirm earlier biological knowledge about the dispersion mechanisms of the species, and lead to an enhanced role of spatial processes in the dynamics of genetic diversity of D. guianensis. |
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INRA Lab. Genet. Arbres Forestiers, BP45, 33611 Gazinet Cedex, France |
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0018067x (Issn) |
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Cited By (since 1996): 34; Export Date: 22 October 2011; Source: Scopus; Coden: Hdtya; doi: 10.1038/sj.hdy.6800296; PubMed ID: 12886285; Language of Original Document: English; Correspondence Address: Caron, H.; INRA Lab. Genet. Arbres Forestiers, BP45, 33611 Gazinet Cedex, France; email: caron@pierroton.inra.fr; Chemicals/CAS: DNA, Plant; Genetic Markers |
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EcoFoG @ webmaster @ |
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358 |
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Author |
De Weirdt, M.; Verbeeck, H.; Maignan, F.; Peylin, P.; Poulter, B.; Bonal, D.; Ciais, P.; Steppe, K. |
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Title |
Seasonal leaf dynamics for tropical evergreen forests in a process-based global ecosystem model |
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Journal Article |
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Year |
2012 |
Publication |
Geoscientific Model Development |
Abbreviated Journal |
Geoscientific Model Dev. |
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5 |
Issue |
5 |
Pages |
1091-1108 |
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The influence of seasonal phenology on canopy photosynthesis in tropical evergreen forests remains poorly understood, and its representation in global ecosystem models is highly simplified, typically with no seasonal variation of canopy leaf properties taken into account. Including seasonal variation in leaf age and photosynthetic capacity could improve the correspondence of global vegetation model outputs with the wet-dry season CO2 patterns measured at flux tower sites in these forests. We introduced a leaf litterfall dynamics scheme in the global terrestrial ecosystem model ORCHIDEE based on seasonal variations in net primary production (NPP), resulting in higher leaf turnover in periods of high productivity. The modifications in the leaf litterfall scheme induce seasonal variation in leaf age distribution and photosynthetic capacity. We evaluated the results of the modification against seasonal patterns of three long-term in-situ leaf litterfall datasets of evergreen tropical forests in Panama, French Guiana and Brazil. In addition, we evaluated the impact of the model improvements on simulated latent heat (LE) and gross primary productivity (GPP) fluxes for the flux tower sites Guyaflux (French Guiana) and TapajÃ3s (km 67, Brazil). The results show that the introduced seasonal leaf litterfall corresponds well with field inventory leaf litter data and times with its seasonality. Although the simulated litterfall improved substantially by the model modifications, the impact on the modelled fluxes remained limited. The seasonal pattern of GPP improved clearly for the Guyaflux site, but no significant improvement was obtained for the TapajÃ3s site. The seasonal pattern of the modelled latent heat fluxes was hardly changed and remained consistent with the observed fluxes. We conclude that we introduced a realistic and generic litterfall dynamics scheme, but that other processes need to be improved in the model to achieve better simulations of GPP seasonal patterns for tropical evergreen forests. © Author(s) 2012. CC Attribution 3.0 License. |
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INRA Nancy, UMR INRA-UHP1137 Ecologie et Ecophysiologie Forestière, 54280 Champenoux, France |
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1991959x (Issn) |
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Export Date: 4 October 2012; Source: Scopus; doi: 10.5194/gmd-5-1091-2012; Language of Original Document: English; Correspondence Address: De Weirdt, M.; Laboratory of Plant Ecology, Department of Applied Ecology and Environmental Biology, Ghent University, Coupure Links 653, 9000 Ghent, Belgium; email: marjolein.deweirdt@ugent.be |
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EcoFoG @ webmaster @ |
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437 |
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Cochard, H.; Coste, S.; Chanson, B.; Guehl, J.M.; Nicolini, E. |
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Hydraulic architecture correlates with bud organogenesis and primary shoot growth in beech (Fagus sylvatica) |
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Journal Article |
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Year |
2005 |
Publication |
Tree Physiology |
Abbreviated Journal |
Tree Physiol. |
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25 |
Issue |
12 |
Pages |
1545-1552 |
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Keywords |
development; hydraulic conductance; leaf primordia; meristem; xylem |
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Abstract |
In beech (Fagus sylvatica L.), the number of leaf primordia preformed in the buds determines the length and the type (long versus short) of annual growth units, and thus, branch growth and architecture. We analyzed the correlation between the number of leaf primordia and the hydraulic conductance of the vascular system connected to the buds. Terminal buds of short growth units and axillary buds of long growth units on lower branches of mature trees were examined. Buds with less than four and more than five leaf primordia formed short and long growth units, respectively. Irrespective of the type of growth unit the bud was formed on, the occurrence of a large number of leaf primordia was associated with high xylem hydraulic conductance. Xylem conductance was correlated to the area of the outermost annual ring. These results suggest that organogenesis and primary growth in buds correlates with secondary growth of the growth units and thus with their hydraulic architecture. Possible causal relationships between the variables are discussed. |
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INRA UBP, UMR PIAF, F-63039 Clermont Ferrand, France, Email: cochard@clermont.inra.fr |
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HERON PUBLISHING |
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0829-318X |
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ISI:000234019900008 |
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no |
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EcoFoG @ webmaster @ |
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281 |
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Author |
Almeras, T. |
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Mechanical analysis of the strains generated by water tension in plant stems. Part II: strains in wood and bark and apparent compliance |
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Journal Article |
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2008 |
Publication |
Tree Physiology |
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Tree Physiol. |
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28 |
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10 |
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1513-1523 |
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biomechanics; calibration; diurnal strains; mechanical model; multilayer cylinder; water potential |
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Tree steins shrink in diameter during the day and swell during the night in response to changes in water tension in the xylem. Stein shrinkage can easily be measured in a nondestructive way, to derive continuous information about tree water status. The relationship between the strain and the change in water tension can be evaluated by empirical calibrations, or can be related to the structure of the plant. A mechanical analysis was performed to make this relationship explicit. The stem is modeled as a cylinder made of multiple layers of tissues, including heartwood, sapwood, and inner and outer bark. The effect of changes in water tension on the apparent strain at the surface of a tissue is quantified as a function of parameters defining stem anatomy and the mechanical properties of the tissues. Various possible applications in the context of tree physiology are suggested. |
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INRA UMR Ecofog, Kourou 97379, French Guiana, Email: t_almeras@hotmail.com |
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HERON PUBLISHING |
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0829-318X |
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ISI:000260027200009 |
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EcoFoG @ eric.marcon @ |
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129 |
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Zinger, L.; Chave, J.; Coissac, E.; Iribar, A.; Louisanna, E.; Manzi, S.; Schilling, V.; Schimann, H.; Sommeria-Klein, G.; Taberlet, P. |
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Extracellular DNA extraction is a fast, cheap and reliable alternative for multi-taxa surveys based on soil DNA |
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Journal Article |
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2016 |
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Soil Biology and Biochemistry |
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Soil Biology and Biochemistry |
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96 |
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16-19 |
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DNA extraction protocol; DNA metabarcoding; Multi-taxa biodiversity; Tropical forest |
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DNA metabarcoding on soil samples is increasingly used for large-scale and multi-taxa biodiversity studies. However, DNA extraction may be a major bottleneck for such wide uses. It should be cost/time effective and allow dealing with large sample volumes so as to maximise the representativeness of both micro- and macro-organisms diversity. Here, we compared the performances of a fast and cheap extracellular DNA extraction protocol with a total DNA extraction method in retrieving bacterial, eukaryotic and plant diversity from tropical soil samples of ca. 10 g. The total DNA extraction protocol yielded more high-quality DNA. Yet, the extracellular DNA protocol provided similar diversity assessments although it presented some differences in clades relative abundance and undersampling biases. We argue that extracellular DNA is a good compromise between cost, labor, and accuracy for high-throughput DNA metabarcoding studies of soil biodiversity. © 2016 Elsevier Ltd. |
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INRA UMR ECOFOG, Kourou, French Guiana |
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Export Date: 17 February 2016 |
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EcoFoG @ webmaster @ |
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663 |
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Doughty, C.E.; Wolf, A.; Baraloto, C.; Malhi, Y. |
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Interdependency of plants and animals in controlling the sodium balance of ecosystems and the impacts of global defaunation |
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Journal Article |
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2016 |
Publication |
Ecography |
Abbreviated Journal |
Ecography |
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39 |
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2 |
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204-212 |
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Sodium, an element which is needed by animals but often toxic in high concentrations to plants, may be deficient and limit animal abundance in inland continental regions, but may be overabundant and limit plant productivity in coastal regions. Here we present data from 50 independent plots (including leaf data from more than 2480 individual trees) showing that leaves in the Amazon basin uptake high amounts of sodium (Na) in a manner more similar to the essential cation potassium (K) than to the toxic cation aluminium (Al). Leaf Na increases linearly with soil Na concentrations, and there is no apparent mechanism for selective exclusion of Na in comparison to K, a key attribute of halophytes. This indicates that the Amazon basin is broadly non-halophytic and increased sodium concentrations in non-halophyte plants often decrease plant productivity. Total Na concentrations are ∼ 10 times higher in coastal regions than inland regions. Such concentration gradients in nutrients may have been reduced in the past because large animals that were abundant in the Pleistocene have been hypothesized to play a large role in reducing nutrient concentration gradients at continental scales. We use a diffusion model and a Na loss rate based on empirical data to estimate that large animals may have moved significant quantities of Na inland away from coastal regions in the Amazon Basin. Therefore, our simple model suggests that large animals may play an important, yet diminishing, role in maintaining the sodium balance of the planet. © 2016 Nordic Society Oikos. |
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INRA UMR Ecologie des Forêts de Guyane, French Guiana, and International Center for Tropical Botany, Dept of Biological Sciences, Florida International Univ., Miami, United States |
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Cited By :2; Export Date: 12 February 2016 |
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EcoFoG @ webmaster @ |
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657 |
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Roggy, J.C.; Nicolini, E.; Imbert, P.; Caraglio, Y.; Bosc, A.; Heuret, P. |
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Title |
Links between tree structure and functional leaf traits in the tropical forest tree Dicorynia guianensis Amshoff (Caesalpiniaceae) |
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Journal Article |
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Year |
2005 |
Publication |
Annals of Forest Science |
Abbreviated Journal |
Ann. For. Sci. |
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62 |
Issue |
6 |
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553-564 |
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Dicorynia guianensis; leaf structure; functional leaf traits; plasticity; tree structure |
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This study looked at the interactive effects of tree architectural stage of development (ASD) and light availability on different plant traits (growth parameters, leaf morpho-anatomy and photosynthetic capacities) in the tropical species Dicorynia guianensis. A qualitative architectural analysis was used to categorize tree individuals sampled along a natural light gradient. The results show that some traits could have an ASD-dependence at the whole plant and leaf level without control of light. The changes observed relate to vigour thresholds the plant has to reach to shift from one ASD to another (i.e., the number of nodes and the internodes length per Growth Unit). Light conditions do not modify these thresholds but may modify the time they are crossed. Tree height was found strongly modulated by light conditions; hence, at a similar height, individuals may belong to different ASD. At the functional level, a decrease in N-m, and A(maxm) was observed with increasing light availability, while N-a increased and A(maxa) remained unaffected. An ASD effect was also observed on Amaxa and LMA but not on Amaxm. These results demonstrated a weak ability of photosynthetic plasticity in response to light conditions, and that variations of leaf photosynthetic variables according to ASD can be explained by modifications in leaf nitrogen and LMA. Questions on the reliability of a height-based sampling strategy for evaluating the phenotypic plasticity of trees in relation to light conditions are raised. |
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INRA, Ecol Forets Guyane, ENGREF, UMR CIRAD, F-97387 Kourou, Guyane Francais, France, Email: roggy.j@cirad.fr |
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EDP SCIENCES S A |
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1286-4560 |
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ISI:000232084400009 |
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EcoFoG @ eric.marcon @ |
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229 |
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Roggy, J.C.; Moiroud, A.; Lensi, R.; Domenach, A.M. |
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Estimating N transfers between N-2-fixing actinorhizal species and the non-N-2-fixing Prunus avium under partially controlled conditions |
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Journal Article |
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2004 |
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Biology and Fertility of Soils |
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Biol. Fertil. Soils |
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39 |
Issue |
5 |
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312-319 |
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actinorhizal trees; mixed culture; litter; N transfer by roots; N-15 |
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Abstract |
Two methods of N transfer between plants-by litter decomposition and root-to-root exchange-were examined in mixed plantations of N-fixing and non-fixing trees. Nitrogen transfers from decaying litters were measured by placing N-15-labelled litters from four actinorhizal tree species around shoots of containerized Prunus avium. Nitrogen transfers by root-to-root exchanges were measured after foliar NO3-N-15 fertilization of Alnus subcordata and Elaeagnus angustifolia growing in containers in association with P. avium. During the first 2 years of litter decomposition, from 5-20% of the N, depending on the litter identity, was released and taken up by P. avium. N availability in the different litters was strongly correlated with the amount of water-soluble N, which was highest in leaves of E. angustifolia. In the association between fixing and non-fixing plants, 7.5% of the A. subcordata N and 25% of E. angustifolia N was transferred to P. avium by root exchange. These results showed that the magnitude of N transfers by root exchange depended on the associated N-2-fixing species. Among the species investigated, E. angustifolia displayed the highest capacity for exudating N from roots as well as for releasing N from litters. These qualities make this tree a promising species for enhancing wood yields in mixed stands. |
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INRA, ENGREF, CIRAD, Unite Mixte Rech,Lab Ecol Forets Trop Guyane, Kourou 97387, French Guiana, Email: roggy.j@cirad.fr |
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SPRINGER-VERLAG |
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0178-2762 |
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ISI:000221197000002 |
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EcoFoG @ eric.marcon @ |
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236 |
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