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Maurice, L., López, F., Becerra, S., Jamhoury, H., Le Menach, K., Dévier, M. - H., et al. (2019). Drinking water quality in areas impacted by oil activities in Ecuador: Associated health risks and social perception of human exposure. Sci. Total Environ., 690, 1203–1217.
Abstract: The unregulated oil exploitation in the Northern Ecuadorian Amazon Region (NEAR), mainly from 1964 to the 90's, led to toxic compounds largely released into the environment. A large majority of people living in the Amazon region have no access to drinking water distribution systems and collects water from rain, wells or small streams. The concentrations of major ions, trace elements, PAHs (polycyclic aromatic hydrocarbons) and BTEX (benzene, toluene, ethylbenzene, xylenes) were analyzed in different water sources to evaluate the impacts of oil extraction and refining. Samples were taken from the NEAR and around the main refinery of the country (Esmeraldas Oil Refinery/State Oil Company of Ecuador) and were compared with domestic waters from the Southern region, not affected by petroleum activities. In most of the samples, microbiological analysis revealed a high level of coliforms representing significant health risks. All measured chemical compounds in waters were in line with national and international guidelines, except for manganese, zinc and aluminum. In several deep-water wells, close to oil camps, toluene concentrations were higher than the natural background while PAHs concentrations never exceeded individually 2 ng·L−1. Water ingestion represented 99% of the total exposure pathways for carcinogenic and non-carcinogenic elements (mainly zinc) in adults and children, while 20% to 49% of the Total Cancer Risk was caused by arsenic concentrations. The health index (HI) indicates acceptable chronic effects for domestic use according the US-EPA thresholds. Nevertheless, these limits do not consider the cocktail effects of metallic and organic compounds. Furthermore, they do not include the social determinants of human exposure, such as socio-economic living conditions or vulnerability. Most (72%) of interviewed families knew sanitary risks but a discrepancy was observed between knowledge and action: religious beliefs, cultural patterns, information sources, experience and emotions play an important role front to exposure. © 2019
Keywords: Demineralized waters; Domestic waters; Hydrocarbons; Metal(loid)s; Oil activities; Social risk perception; Benzene refining; Health; Health risks; Hydrocarbons; Petroleum refineries; Petroleum refining; Polycyclic aromatic hydrocarbons; Potable water; Risk assessment; Risk perception; Toluene; Trace elements; Water quality; Water wells; Zinc; Arsenic concentration; Demineralized water; Domestic water; Information sources; Living conditions; Microbiological analysis; Natural backgrounds; Oil activities; Water distribution systems
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Dubois-Fernandez, P. C., Le Toan, T., Daniel, S., Oriot, H., Chave, J., Blanc, L., et al. (2012). The tropiSAR airborne campaign in French Guiana: Objectives, description, and observed temporal behavior of the backscatter signal. IEEE Trans Geosci Remote Sens, 50(8), 3228–3241.
Abstract: The TropiSAR campaign has been conducted in August 2009 in French Guiana with the ONERA airborne radar system SETHI. The main objective of this campaign was to collect data to support the Phase A of the 7th Earth Explorer candidate mission, BIOMASS. Several specific questions needed to be addressed to consolidate the mission concept following the Phase 0 studies, and the data collection strategy was constructed accordingly. More specifically, a tropical forest data set was required in order to provide test data for the evaluation of the foreseen inversion algorithms and data products. The paper provides a description of the resulting data set which is now available through the European Space Agency website under the airborne campaign link. First results from the TropiSAR database analysis are presented with two in-depth analyses about both the temporal radiometric variation and temporal coherence at P-band. The temporal variations of the backscatter values are less than 0.5 dB throughout the campaign, and the coherence values are observed to stay high even after 22 days. These results are essential for the BIOMASS mission. The observed temporal stability of the backscatter is a good indicator of the expected robustness of the biomass estimation in tropical forests, from cross-polarized backscatter values as regarding environmental changes such as soil moisture. The high temporal coherence observed after a 22-day period is a prerequisite for SAR Polarimetric Interferometry and Tomographic applications in a single satellite configuration. The conclusion then summarizes the paper and identifies the next steps in the analysis. © 2012 IEEE.
Keywords: Forestry; interferometry; polarimetric synthetic aperture radar
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Engel, J., Brousseau, L., & Baraloto, C. (2016). GuiaTreeKey, a multi-access electronic key to identify tree genera in French Guiana. PhytoKeys, 68(1), 27–44.
Abstract: The tropical rainforest of Amazonia is one of the most species-rich ecosystems on earth, with an estimated 16000 tree species. Due to this high diversity, botanical identification of trees in the Amazon is difficult, even to genus, often requiring the assistance of parataxonomists or taxonomic specialists. Advances in informatics tools offer a promising opportunity to develop user-friendly electronic keys to improve Amazonian tree identification. Here, we introduce an original multi-access electronic key for the identification of 389 tree genera occurring in French Guiana terra-firme forests, based on a set of 79 morphological characters related to vegetative, floral and fruit characters. Its purpose is to help Amazonian tree identification and to support the dissemination of botanical knowledge to non-specialists, including forest workers, students and researchers from other scientific disciplines. The electronic key is accessible with the free access software Xper2, and the database is publicly available on figshare: https://figshare.com/s/75d890b7d707e0ffc9bf (doi: 10.6084/m9.figshare.2682550). © Julien Engel et al.
Keywords: Amazonia; Electronic key; French Guiana; Morphological characters; Neotropics; Trees identification; Xper2
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Carrias, J. - F., Céréghino, R., Brouard, O., Pélozuelo, L., Dejean, A., Couté, A., et al. (2014). Two coexisting tank bromeliads host distinct algal communities on a tropical inselberg. Plant Biol., 16(5), 997–1004.
Abstract: The tank bromeliads Aechmea aquilega (Salisb.) and Catopsis berteroniana (Schultes f.) coexist on a sun-exposed Neotropical inselberg in French Guiana, where they permit conspicuous freshwater pools to form that differ in size, complexity and detritus content. We sampled the algal communities (both eukaryotic and cyanobacterial taxa, including colourless forms) inhabiting either A. aquilega (n = 31) or C. berteroniana (n = 30) and examined differences in community composition and biomass patterns in relation to several biotic and abiotic variables. Chlorella sp. and Bumilleriopsis sp. were the most common taxa and dominated the algal biomass in A. aquilega and C. berteroniana, respectively. Using a redundancy analysis, we found that water volume, habitat complexity and the density of phagotrophic protozoa and collector-gatherer invertebrates were the main factors explaining the distribution of the algal taxa among the samples. Hierarchical clustering procedures based on abundance and presence/absence data clearly segregated the samples according to bromeliad species, revealing that the algal communities in the smaller bromeliad species were not a subset of the communities found in the larger bromeliad species. We conclude that, even though two coexisting tank bromeliad populations create adjacent aquatic habitats, each population hosts a distinct algal community. Hence, bromeliad diversity is thought to promote the local diversity of freshwater algae in the Neotropics. © 2014 German Botanical Society and The Royal Botanical Society of the Netherlands.
Keywords: Algae; Bromeliaceae; Inselberg; Neotropics; Phytotelmata; Aechmea; algae; Bromeliaceae; Bumilleriopsis; Catopsis berteroniana; Chlorella (unclassified Chlorophyceae); Chlorella (unclassified Trebouxiophyceae); Chlorella sp.; Cyanobacteria; Eukaryota; Invertebrata; Protozoa
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Nasr, H., Domenach, A. M., Ghorbel, M. H., & Benson, D. R. (2007). Divergence in symbiotic interactions between same genotypic PCR-RFLP Frankia strains and different Casuarinaceae species under natural conditions. Physiol. Plant., 130(3), 400–408.
Abstract: The symbiotic interactions between Frankia strains and their associated plants from the Casuarinaceae under controlled conditions are well documented but little is known about these interactions under natural conditions. We explored the symbiotic interactions between eight genotypically characterized Frankia strains and five Casuarinaceae species in long-term field trials. Characterization of strains was performed using the polymerase chain reaction (PCR) and restriction fragment length polymorphism (RFLP) for the nifD-nifK intergenic transcribed spacer (ITS) and 16S-23S ITS. Assessments of the symbiotic interactions were based on nodulation patterns using nodule dry weight and viability, and on actual N-2 fixation using the delta N-15 method. The PCR-RFLP patterns showed that the analyzed strains belonged to the same genotypic group (CeD group), regardless of the host species and environment of origin. The nodule viability index is introduced as a new tool to measure the viability of perennial nodules and to predict their effectiveness. The host Casuarinaceae species was a key factor influencing both the actual N-2-fixing activity of the associated Frankia strain and the viability of nodules within a location. This is the first study providing information on the symbiotic interactions between genotypically characterized Frankia strains and actinorhizal plants under natural conditions. The results revealed a way to improve a long-term management of the Casuarinaceae symbiosis.
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Moore, A. L., McCarthy, M. A., Parris, K. M., & Moore, J. L. (2014). The optimal number of surveys when detectability varies. PLoS ONE, 9(12), e115345.
Abstract: The survey of plant and animal populations is central to undertaking field ecology. However, detection is imperfect, so the absence of a species cannot be determined with certainty. Methods developed to account for imperfect detectability during surveys do not yet account for stochastic variation in detectability over time or space. When each survey entails a fixed cost that is not spent searching (e.g., time required to travel to the site), stochastic detection rates result in a trade-off between the number of surveys and the length of each survey when surveying a single site. We present a model that addresses this trade-off and use it to determine the number of surveys that: 1) maximizes the expected probability of detection over the entire survey period; and 2) is most likely to achieve a minimally-acceptable probability of detection. We illustrate the applicability of our approach using three practical examples (minimum survey effort protocols, number of frog surveys per season, and number of quadrats per site to detect a plant species) and test our model's predictions using data from experimental plant surveys. We find that when maximizing the expected probability of detection, the optimal survey design is most sensitive to the coefficient of variation in the rate of detection and the ratio of the search budget to the travel cost. When maximizing the likelihood of achieving a particular probability of detection, the optimal survey design is most sensitive to the required probability of detection, the expected number of detections if the budget were spent only on searching, and the expected number of detections that are missed due to travel costs. We find that accounting for stochasticity in detection rates is likely to be particularly important for designing surveys when detection rates are low. Our model provides a framework to do this. © 2014 Moore et al.
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Amusant, N., Nigg, M., Thibaut, B., & Beauchene, J. (2014). Diversity of decay resistance strategies of durable tropical woods species: Bocoa prouacencsis Aublet, Vouacapoua americana Aublet, Inga alba (Sw.) Wild. Int. Biodeterior. Biodegrad., 94, 103–108.
Abstract: The study of decay resistance in wood is of interest for wood end-users but also for the global carbon balance since wood biodegradation is a key driver of forest ecosystem functioning through its impacts on carbon and nutrient cycling. We studied the density and wood extractive contents in order to understand decay resistance against soil microflora after 90 days exposure of sapwood and heartwood from three Neotropical wood species known for their decay resistance: Bocoa prouacensis, Vouacapoua americana, Inga alba. Decay resistance was correlated with density more than wood extractive content. The results highlighted different decay resistance strategies. In B. prouacensis, both sapwood and heartwood were highly resistant due to the high density and high content of antifungal wood extractives. In V. americana heartwood, decay resistance was due to the high synergistic-acting wood extractive content. Conversely, with the least dense wood species I. alba, we found that decay resistance was due to the antifungal wood extractives synthesized early in the sapwood. In conclusion, we showed that the three wood species with the same level of heartwood decay resistance performance had different decay resistance strategies according to the anatomic and defensive wood traits.
Keywords: Decay resistance; Density; Heartwood; Sapwood; Tropical wood; Wood extractive; Decay resistance; Heartwood; Sapwood; Tropical wood; Wood extractives; Density (specific gravity); Andira aubletii; Bocoa; Inga
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Maia, A. C. D., Gibernau, M., Dötterl, S., Do Amaral Ferraz Navarro, D. M., Seifert, K., Müller, T., et al. (2013). The floral scent of Taccarum ulei (Araceae): Attraction of scarab beetle pollinators to an unusual aliphatic acyloin. Phytochemistry, 93, 71–78.
Abstract: The strongly fragrant thermogenic inflorescences of Taccarum ulei (Araceae) are highly attractive to nightactive scarab beetles of Cyclocephala celata and C. cearae (Scarabaeidae, Cyclocephalini), which are effective pollinators of plants in the wild in northeastern Brazil. GC-MS analysis of headspace floral scent samples of T. ulei established that two constituents, (S)-2-hydroxy-5- methyl-3-hexanone (an aliphatic acyloin rarely detected in flowers) and dihydro-b-ionone (an irregular terpene) accounted for over 96% of the total scent discharge. Behavioral tests (in both field and cages) showed that male and female C. celata and C. cearae were attracted to traps baited with a synthetic mixture of both compounds; however, they were also responsive to (S)-2-hydroxy-5-methyl-3-hexanone alone, which thus functions as a specific attractive cue. These findings support other recent research in suggesting that angiosperms pollinated by cyclocephaline scarab beetles release floral odors of limited complexity in terms of numbers of compounds, but often dominated by unusual compounds that may ensure attraction of specific pollinator species. © 2013 Elsevier B.V.
Keywords: (S)-2-Hydroxy-5-methyl-3-hexanone; Araceae; Behavioral tests; Cyclocephala celata and C. cearae; Dihydro-β-ionone; Floral volatiles; Taccarum ulei
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Campillo, F., & Rossi, V. (2009). Convolution Particle Filter for Parameter Estimation in General State-Space Models. IEEE Trans. Aerosp. Electron. Syst., 45(3), 1063–1072.
Abstract: The state-space modeling of partially observed dynamical systems generally requires estimates of unknown parameters. The dynamic state vector together with the static parameter vector can be considered as an augmented state vector. Classical filtering methods, such as the extended Kalman filter (EKF) and the bootstrap particle filter (PF), fail to estimate the augmented state vector. For these classical filters to handle the augmented state vector, a dynamic noise term should be artificially added to the parameter components or to the deterministic component of the dynamical system. However, this approach degrades the estimation performance of the filters. We propose a variant of the PF based on convolution kernel approximation techniques. This approach is tested on a simulated case study.
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Courtois, E. A., Stahl, C., Van den Berge, J., Bréchet, L., Van Langenhove, L., Richter, A., et al. (2018). Spatial Variation of Soil CO2, CH4 and N2O Fluxes Across Topographical Positions in Tropical Forests of the Guiana Shield. Ecosystems, 21(7), 1445–1458.
Abstract: The spatial variation of soil greenhouse gas fluxes (GHG; carbon dioxide—CO2, methane—CH4 and nitrous oxide—N2O) remains poorly understood in highly complex ecosystems such as tropical forests. We used 240 individual flux measurements of these three GHGs from different soil types, at three topographical positions and in two extreme hydric conditions in the tropical forests of the Guiana Shield (French Guiana, South America) to (1) test the effect of topographical positions on GHG fluxes and (2) identify the soil characteristics driving flux variation in these nutrient-poor tropical soils. Surprisingly, none of the three GHG flux rates differed with topographical position. CO2 effluxes covaried with soil pH, soil water content (SWC), available nitrogen and total phosphorus. The CH4 fluxes were best explained by variation in SWC, with soils acting as a sink under drier conditions and as a source under wetter conditions. Unexpectedly, our study areas were generally sinks for N2O and N2O fluxes were partly explained by total phosphorus and available nitrogen concentrations. This first study describing the spatial variation of soil fluxes of the three main GHGs measured simultaneously in forests of the Guiana Shield lays the foundation for specific studies of the processes underlying the observed patterns.
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