| Records |
| Author |
Zinger, L.; Donald, J.; Brosse, S.; Gonzalez, M.A.; Iribar, A.; Leroy, C.; Murienne, J.; Orivel, J.; Schimann, H.; Taberlet, P.; Lopes, C.M. |
| Title |
Advances and prospects of environmental DNA in neotropical rainforests |
Type |
Journal Article |
| Year |
2020 |
Publication |
Advances in Ecological Research |
Abbreviated Journal |
Adv. Ecol. Res. |
| Volume |
62 |
Issue |
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Pages |
331-373 |
| Keywords |
Biomonitoring; Conservation biology; DNA metabarcoding; eDNA; Environmental genomics; Neotropics; Rainforests |
Abstract  |
The rainforests of the Neotropics shelter a vast diversity of plant, animal and microscopic species that provide critical ecosystem goods and services for both local and worldwide populations. These environments face a major crisis due to increased deforestation, pollution, and climate change, emphasizing the need for more effective conservation efforts. The adequate monitoring of these ecosystems has proven a complex and time consuming endeavour, which depends on ever dwindling taxonomic expertise. To date, many species remain undiscovered, let alone described, with otherwise limited information regarding known species population distributions and densities. Overcoming these knowledge shortfalls and practical limitations is becoming increasingly possible through techniques based on environmental DNA (eDNA), i.e., DNA that can be obtained from environmental samples (e.g. tissues, soil, sediment, water, etc.). When coupled with high-throughput sequencing, these techniques now enable realistic, cost-effective, and standardisable biodiversity assessments. This opens up enormous opportunities for advancing our understanding of complex and species-rich tropical communities, but also in facilitating large-scale biomonitoring programs in the neotropics. In this review, we provide a brief introduction to eDNA methods, and an overview of their current and potential uses in both terrestrial and aquatic ecosystems of neotropical rainforests. We also discuss the limits and challenges of these methods for our understanding and monitoring of biodiversity, as well as future research and applied perspectives of these techniques in neotropical rainforests, and beyond. © 2020 Elsevier Ltd |
| Address |
Departamento de Zoologia, Instituto de Biociências, Universidade Estadual Paulista (UNESP), Rio Claro, SP, Brazil |
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Academic Press Inc. |
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Dumbrell A.J.; Turner E.C.; Fayle T.M. |
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Advances in Ecological Research |
| Series Volume |
62 |
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| ISSN |
00652504 (Issn); 9780128211342 (Isbn) |
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EcoFoG @ webmaster @ |
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995 |
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N'Guessan, A.E.; N'dja, J.K.; Yao, O.N.; Amani, B.H.K.; Gouli, R.G.Z.; Piponiot, C.; Zo-Bi, I.C.; Herault, B. |
| Title |
Drivers of biomass recovery in a secondary forested landscape of West Africa |
Type |
Journal Article |
| Year |
2019 |
Publication |
Forest Ecology and Management |
Abbreviated Journal |
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| Volume |
433 |
Issue |
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Pages |
325-331 |
| Keywords |
Biomass; Cultivation; Ecology; Recovery; Secondary recovery; Agricultural land; Bayesian frameworks; Diameter-at-breast heights; Forested landscapes; Neotropical forests; Old-growth forest; Physical environments; Secondary forests; Forestry; Dioscorea alata |
| Abstract |
The rapidly growing human population in West Africa has generated increasing demand for agricultural land and forest products. Consequently 90% of the original rainforest cover has now disappeared and the remainder is heavily fragmented and highly degraded. Although many studies have focused on carbon stocks and fluxes in intact African forests, little information exists on biomass recovery rates in secondary forests. We studied a chronosequence of 96 secondary and old-growth forest fragments (0.2 ha each) where 32.103 trees with Diameter at Breast Height > 2.5 cm have been censused. We modelled the biomass recovery trajectories in a time-explicit Bayesian framework and tested the effect on recovery rates of a large set of covariates related to the physical environment, plot history, and forest connectivity. Recovery rate trajectory is highly non-linear: recovery rates accelerated from 1 to 37 years, when biomass recovery reached 4.23 Mg /ha /yr, and decelerated afterwards. We predict that, on average, 10%, 25% and 50% of the old-growth forest biomass is respectively recovered 17, 30, and 51 years after abandonment. Recovery rates are strongly shaped by both the number of remnant trees (residuals of the former old-growth forest) and the previous crop cultivated before abandonment. The latter induced large differences in the time needed to recover 50% of an old-growth forest biomass: from 38 years for former Yam fields up to 86 years for former rice fields. Our results emphasize (i) the very slow recovery rates of West African forests, as compared to Neotropical forests (ii) the long-lasting impacts of past human activities and management choices on ecosystem biomass recovery in West African degraded forests. |
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Elsevier B.V. |
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03781127 (Issn) |
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EcoFoG @ webmaster @ |
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838 |
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Molto, Q.; Herault, B.; Boreux, J.-J.; Daullet, M.; Rousteau, A.; Rossi, V. |
| Title |
Predicting tree heights for biomass estimates in tropical forests -A test from French Guiana |
Type |
Journal Article |
| Year |
2014 |
Publication |
Biogeosciences |
Abbreviated Journal |
Biogeosciences |
| Volume |
11 |
Issue |
12 |
Pages |
3121-3130 |
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| Abstract |
The recent development of REDD+ mechanisms requires reliable estimation of carbon stocks, especially in tropical forests that are particularly threatened by global changes. Even though tree height is a crucial variable for computing aboveground forest biomass (AGB), it is rarely measured in large-scale forest censuses because it requires extra effort. Therefore, tree height has to be predicted with height models. The height and diameter of all trees over 10 cm in diameter were measured in 33 half-hectare plots and 9 one-hectare plots throughout northern French Guiana, an area with substantial climate and environmental gradients. We compared four different model shapes and found that the Michaelis-Menten shape was most appropriate for the tree biomass prediction. Model parameter values were significantly different from one forest plot to another, and this leads to large errors in biomass estimates. Variables from the forest stand structure explained a sufficient part of plot-to-plot variations of the height model parameters to improve the quality of the AGB predictions. In the forest stands dominated by small trees, the trees were found to have rapid height growth for small diameters. In forest stands dominated by larger trees, the trees were found to have the greatest heights for large diameters. The aboveground biomass estimation uncertainty of the forest plots was reduced by the use of the forest structure-based height model. It demonstrated the feasibility and the importance of height modeling in tropical forests for carbon mapping. When the tree heights are not measured in an inventory, they can be predicted with a height-diameter model and incorporating forest structure descriptors may improve the predictions. © Author(s) 2014. CC Attribution 3.0 License. |
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Université de Liège, Liège, Belgium |
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European Geosciences Union |
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17264189 (Issn) |
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Export Date: 3 July 2014; Correspondence Address: Molto, Q.; Université des Antilles et de la Guyane, UMR Ecologie des Forêts de Guyane, Kourou, France; email: quentin.molto@gmail.com |
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EcoFoG @ webmaster @ |
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550 |
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Gibernau, M.; Orivel, J.; Delabie, J.H.C.; Barabe, D.; Dejean, A. |
| Title |
An asymmetrical relationship between an arboreal ponerine ant and a trash-basket epiphyte (Araceae) RID D-4390-2009 RID C-4034-2011 |
Type |
Journal Article |
| Year |
2007 |
Publication |
Biological Journal of the Linnean Society |
Abbreviated Journal |
Biol. J. Linnean Soc. |
| Volume |
91 |
Issue |
3 |
Pages |
341-346 |
| Keywords |
hanging soil; mutualism; nest site selection; plant protection |
| Abstract |
The relationship between ants and Philodendron insigne, a trash-basket epiphyte abundant along streams, was studied in French Guiana. Only a few (3%) of the young plants sheltered ants, whereas 90% of the mature individuals did. The most frequent associate was Odontomachus hastatus (Fabricius), an arboreal ponerine ant, and its nests were almost entirely (94.4%) located in P. insigne root clusters. Experimental choice tests conducted on O. hastatus workers confirmed their preference for P. insigne. We propose that the interactions between P. insigne and ants may be intermediate between non-obligatory, reward-based interactions and obligatory, specific ant-myrmecophyte interactions because (1) almost all mature P. insigne individuals are associated with ants; (2) O. hastatus is the most frequent when diverse ants nest in its root clusters; (3) ants colonize mature P. insigne, but rarely young individuals; (4) ants, particularly O. hastatus, protect the foliage of their host; and (5) at least one ant species, O. hastatus, prefers P. insigne over other host plants. The latter relationship is asymmetrical because P. insigne is inhabited by diverse ants whereas O. hastatus nests almost exclusively in P. insigne. (c) 2007 The Linnean Society of London, Biological Journal of the Linnean Society, 2007, 91, 341-346. |
| Address |
Univ Toulouse 3, Lab Evolut & Divers Biol, UMR 5174, CNRS,UPS, F-31062 Toulouse 9, France, Email: dejean@cict.fr |
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Blackwell Publishing |
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English |
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0024-4066 |
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WOS:000247817100001 |
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no |
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EcoFoG @ webmaster @ |
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356 |
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Hattenschwiler, S.; Fromin, N.; Barantal, S. |
| Title |
Functional diversity of terrestrial microbial decomposers and their substrates |
Type |
Journal Article |
| Year |
2011 |
Publication |
Comptes Rendus Biologies |
Abbreviated Journal |
C. R. Biol. |
| Volume |
334 |
Issue |
5-6 |
Pages |
393-402 |
| Keywords |
Bacteria; Biogeochemical cycles; Decomposition; Dissimilarity; Ecosystem functioning; Functional diversity indices; Fungi; Leaf litter |
| Abstract |
The relationship between biodiversity and biogeochemical processes gained much interest in light of the rapidly decreasing biodiversity worldwide. In this article, we discuss the current status, challenges and prospects of functional concepts to plant litter diversity and microbial decomposer diversity. We also evaluate whether these concepts permit a better understanding of how biodiversity is linked to litter decomposition as a key ecosystem process influencing carbon and nutrient cycles. Based on a literature survey, we show that plant litter and microbial diversity matters for decomposition, but that considering numbers of taxonomic units appears overall as little relevant and less useful than functional diversity. However, despite easily available functional litter traits and the well-established theoretical framework for functional litter diversity, the impact of functional litter diversity on decomposition is not yet well enough explored. Defining functional diversity of microorganisms remains one of the biggest challenges for functional approaches to microbial diversity. Recent developments in microarray and metagenomics technology offer promising possibilities in the assessment of the functional structure of microbial communities. This might allow significant progress in measuring functional microbial diversity and ultimately in our ability to predict consequences of biodiversity loss in the decomposer system for biogeochemical processes. (C) 2011 Academie des sciences. Published by Elsevier Masson SAS. All rights reserved. |
| Address |
[Haettenschwiler, Stephan; Fromin, Nathalie; Barantal, Sandra] CNRS, CEFE, F-34293 Montpellier 5, France, Email: stephan.hattenschwiler@cefe.cnrs.fr |
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Elsevier France-Editions Scientifiques Medicales Elsevier |
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1631-0691 |
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ISI:000292013400008 |
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EcoFoG @ webmaster @ |
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323 |
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Liang, J.; Crowther, T.W.; Picard, N.; Wiser, S.; Zhou, M.; Alberti, G.; Schulze, E.-D.; McGuire, A.D.; Bozzato, F.; Pretzsch, H.; de-Miguel, S.; Paquette, A.; Herault, B.; Scherer-Lorenzen, M.; Barrett, C.B.; Glick, H.B.; Hengeveld, G.M.; Nabuurs, G.-J.; Pfautsch, S.; Viana, H.; Vibrans, A.C.; Ammer, C.; Schall, P.; Verbyla, D.; Tchebakova, N.; Fischer, M.; Watson, J.V.; Chen, H.Y.H.; Lei, X.; Schelhaas, M.-J.; Lu, H.; Gianelle, D.; Parfenova, E.I.; Salas, C.; Lee, E.; Lee, B.; Kim, H.S.; Bruelheide, H.; Coomes, D.A.; Piotto, D.; Sunderland, T.; Schmid, B.; Gourlet-Fleury, S.; Sonké, B.; Tavani, R.; Zhu, J.; Brandl, S.; Vayreda, J.; Kitahara, F.; Searle, E.B.; Neldner, V.J.; Ngugi, M.R.; Baraloto, C.; Frizzera, L.; Bałazy, R.; Oleksyn, J.; Zawiła-Niedźwiecki, T.; Bouriaud, O.; Bussotti, F.; Finér, L.; Jaroszewicz, B.; Jucker, T.; Valladares, F.; Jagodzinski, A.M.; Peri, P.L.; Gonmadje, C.; Marthy, W.; O’Brien, T.; Martin, E.H.; Marshall, A.R.; Rovero, F.; Bitariho, R.; Niklaus, P.A.; Alvarez-Loayza, P.; Chamuya, N.; Valencia, R.; Mortier, F.; Wortel, V.; Engone-Obiang, N.L.; Ferreira, L.V.; Odeke, D.E.; Vasquez, R.M.; Lewis, S.L.; Reich, P.B. |
| Title |
Positive biodiversity-productivity relationship predominant in global forests |
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Journal Article |
| Year |
2016 |
Publication |
Science |
Abbreviated Journal |
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354 |
Issue |
6309 |
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The relationship between biodiversity and ecosystem productivity has been explored in detail in herbaceous vegetation, but patterns in forests are far less well understood. Liang et al. have amassed a global forest data set from >770,000 sample plots in 44 countries. A positive and consistent relationship can be discerned between tree diversity and ecosystem productivity at landscape, country, and ecoregion scales. On average, a 10% loss in biodiversity leads to a 3% loss in productivity. This means that the economic value of maintaining biodiversity for the sake of global forest productivity is more than fivefold greater than global conservation costs.Science, this issue p. 196INTRODUCTIONThe biodiversity-productivity relationship (BPR; the effect of biodiversity on ecosystem productivity) is foundational to our understanding of the global extinction crisis and its impacts on the functioning of natural ecosystems. The BPR has been a prominent research topic within ecology in recent decades, but it is only recently that we have begun to develop a global perspective.RATIONALEForests are the most important global repositories of terrestrial biodiversity, but deforestation, forest degradation, climate change, and other factors are threatening approximately one half of tree species worldwide. Although there have been substantial efforts to strengthen the preservation and sustainable use of forest biodiversity throughout the globe, the consequences of this diversity loss pose a major uncertainty for ongoing international forest management and conservation efforts. The forest BPR represents a critical missing link for accurate valuation of global biodiversity and successful integration of biological conservation and socioeconomic development. Until now, there have been limited tree-based diversity experiments, and the forest BPR has only been explored within regional-scale observational studies. Thus, the strength and spatial variability of this relationship remains unexplored at a global scale.RESULTSWe explored the effect of tree species richness on tree volume productivity at the global scale using repeated forest inventories from 777,126 permanent sample plots in 44 countries containing more than 30 million trees from 8737 species spanning most of the global terrestrial biomes. Our findings reveal a consistent positive concave-down effect of biodiversity on forest productivity across the world, showing that a continued biodiversity loss would result in an accelerating decline in forest productivity worldwide.The BPR shows considerable geospatial variation across the world. The same percentage of biodiversity loss would lead to a greater relative (that is, percentage) productivity decline in the boreal forests of North America, Northeastern Europe, Central Siberia, East Asia, and scattered regions of South-central Africa and South-central Asia. In the Amazon, West and Southeastern Africa, Southern China, Myanmar, Nepal, and the Malay Archipelago, however, the same percentage of biodiversity loss would lead to greater absolute productivity decline.CONCLUSIONOur findings highlight the negative effect of biodiversity loss on forest productivity and the potential benefits from the transition of monocultures to mixed-species stands in forestry practices. The BPR we discover across forest ecosystems worldwide corresponds well with recent theoretical advances, as well as with experimental and observational studies on forest and nonforest ecosystems. On the basis of this relationship, the ongoing species loss in forest ecosystems worldwide could substantially reduce forest productivity and thereby forest carbon absorption rate to compromise the global forest carbon sink. We further estimate that the economic value of biodiversity in maintaining commercial forest productivity alone is $166 billion to $490 billion per year. Although representing only a small percentage of the total value of biodiversity, this value is two to six times as much as it would cost to effectively implement conservation globally. These results highlight the necessity to reassess biodiversity valuation and the potential benefits of integrating and promoting biological conservation in forest resource management and forestry practices worldwide.Global effect of tree species diversity on forest productivity.Ground-sourced data from 777,126 global forest biodiversity permanent sample plots (dark blue dots, left), which cover a substantial portion of the global forest extent (white), reveal a consistent positive and concave-down biodiversity-productivity relationship across forests worldwide (red line with pink bands representing 95% confidence interval, right).The biodiversity-productivity relationship (BPR) is foundational to our understanding of the global extinction crisis and its impacts on ecosystem functioning. Understanding BPR is critical for the accurate valuation and effective conservation of biodiversity. Using ground-sourced data from 777,126 permanent plots, spanning 44 countries and most terrestrial biomes, we reveal a globally consistent positive concave-down BPR, showing that continued biodiversity loss would result in an accelerating decline in forest productivity worldwide. The value of biodiversity in maintaining commercial forest productivity alone—US$166 billion to 490 billion per year according to our estimation—is more than twice what it would cost to implement effective global conservation. This highlights the need for a worldwide reassessment of biodiversity values, forest management strategies, and conservation priorities. |
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703 |
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Bosc, A.; De Grandcourt, A.; Loustau, D. |
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Variability of stem and branch maintenance respiration in a Pinus pinaster tree |
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Journal Article |
| Year |
2003 |
Publication |
Tree Physiology |
Abbreviated Journal |
Tree Physiol. |
| Volume |
23 |
Issue |
4 |
Pages |
227-236 |
| Keywords |
model; nitrogen; phloem; sapwood; temperature |
| Abstract |
The relationship between maintenance respiration (R.) of woody organs and their structural characteristics was explored in adult Pinus pinaster Ait. trees. We measured R-m on 75 stem and branch segments of different ages (from 3 to 24 years) and diameters (from 1 to 35 cm). The temperature response of R-m was derived from field measurements based on a classical exponential function with Q(10) = 2.13. Relationships between R-m and the dimensions of the woody organs were analyzed under controlled conditions in the laboratory. The surface area of a woody organ was a better predictor of R-m than volume, but surface area failed to account for the observed within-tree variability of R-m among stems, branches and twigs. Two simple models were proposed to predict the variability of R-m at 15 degreesC in an adult tree. Model 1, a linear function model based on the dry mass and nitrogen concentration of sapwood and phloem tissues, explained most of the variability of R-m in branches and stems (R-2 = 0.97). We concluded that the respective contributions of the phloem and sapwood depend on the location and diameter of the woody organ. Model 2, a power-law function model based on the length, diameter and age of the sample, explained the same variance of R-m as Model 1 and is appropriate for scaling R-m to the stand level. Models 1 and 2 appear to explain a larger variability of R-m than models based on stem area or sapwood mass. |
| Address |
INRA, F-33612 Cestas, France, Email: alexandre.bosc@pierroton.inra.fr |
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HERON PUBLISHING |
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ISI:000181841200002 |
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EcoFoG @ eric.marcon @ |
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246 |
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Rowland, L.; Hill, T.C.; Stahl, C.; Siebicke, L.; Burban, B.; Zaragoza-Castells, J.; Ponton, S.; Bonal, D.; Meir, P.; Williams, M. |
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Evidence for strong seasonality in the carbon storage and carbon use efficiency of an Amazonian forest |
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Journal Article |
| Year |
2014 |
Publication |
Global Change Biology |
Abbreviated Journal |
Global Change Biol. |
| Volume |
20 |
Issue |
3 |
Pages |
979-991 |
| Keywords |
Carbon use efficiency; Dalec; Data assimilation; Ecosystem respiration; French Guiana; Seasonal carbon fluxes; Tropical forest |
| Abstract |
The relative contribution of gross primary production and ecosystem respiration to seasonal changes in the net carbon flux of tropical forests remains poorly quantified by both modelling and field studies. We use data assimilation to combine nine ecological time series from an eastern Amazonian forest, with mass balance constraints from an ecosystem carbon cycle model. The resulting analysis quantifies, with uncertainty estimates, the seasonal changes in the net carbon flux of a tropical rainforest which experiences a pronounced dry season. We show that the carbon accumulation in this forest was four times greater in the dry season than in the wet season and that this was accompanied by a 5% increase in the carbon use efficiency. This seasonal response was caused by a dry season increase in gross primary productivity, in response to radiation and a similar magnitude decrease in heterotrophic respiration, in response to drying soils. The analysis also predicts increased carbon allocation to leaves and wood in the wet season, and greater allocation to fine roots in the dry season. This study demonstrates implementation of seasonal variations in parameters better enables models to simulate observed patterns in data. In particular, we highlight the necessity to simulate the seasonal patterns of heterotrophic respiration to accurately simulate the net carbon flux seasonal tropical forest. © 2013 The Authors Global Change Biology Published by John Wiley & Sons Ltd. |
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Research School of Biology, Division of Plant Sciences, Australian National University, Canberra, ACT, 0200, Australia |
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Cited By (since 1996):1; Export Date: 24 February 2014; Source: Scopus; Language of Original Document: English; Correspondence Address: Rowland, L.; School of Geosciences, University of Edinburgh, Edinburgh, EH9 3JN, United Kingdom; email: lucy.rowland@ed.ac.uk; Funding Details: FT110100457, ARC, Australian Research Council; Funding Details: NE/F002149/1, NERC, Natural Environment Research Council; Funding Details: NE/J011002/1, NERC, Natural Environment Research Council |
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EcoFoG @ webmaster @ |
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Phillips, O.L.; van der Heijden, G.; Lewis, S.L.; Lopez-Gonzalez, G.; Aragao, L.E.O.C.; Lloyd, J.; Malhi, Y.; Monteagudo, A.; Almeida, S.; Davila, E.A.; Amaral, I.; Andelman, S.; Andrade, A.; Arroyo, L.; Aymard, G.; Baker, T.R.; Blanc, L.; Bonal, D.; de Oliveira, A.C.A.; Chao, K.J.; Cardozo, N.D.; da Costa, L.; Feldpausch, T.R.; Fisher, J.B.; Fyllas, N.M.; Freitas, M.A.; Galbraith, D.; Gloor, E.; Higuchi, N.; Honorio, E.; Jimenez, E.; Keeling, H.; Killeen, T.J.; Lovett, J.C.; Meir, P.; Mendoza, C.; Morel, A.; Vargas, P.N.; Patino, S.; Peh, K.S.H.; Cruz, A.P.; Prieto, A.; Quesada, C.A.; Ramirez, F.; Ramirez, H.; Rudas, A.; Salamao, R.; Schwarz, M.; Silva, J.; Silveira, M.; Slik, J.W.F.; Sonke, B.; Thomas, A.S.; Stropp, J.; Taplin, J.R.D.; Vasquez, R.; Vilanova, E. |
| Title |
Drought-mortality relationships for tropical forests |
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Journal Article |
| Year |
2010 |
Publication |
New Phytologist |
Abbreviated Journal |
New Phytol. |
| Volume |
187 |
Issue |
3 |
Pages |
631-646 |
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Amazon; Borneo; drought; lags mortality; RAINFOR; trees; tropics |
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The rich ecology of tropical forests is intimately tied to their moisture status. Multi-site syntheses can provide a macro-scale view of these linkages and their susceptibility to changing climates. Here, we report pan-tropical and regional-scale analyses of tree vulnerability to drought. We assembled available data on tropical forest tree stem mortality before, during, and after recent drought events, from 119 monitoring plots in 10 countries concentrated in Amazonia and Borneo. In most sites, larger trees are disproportionately at risk. At least within Amazonia, low wood density trees are also at greater risk of drought-associated mortality, independent of size. For comparable drought intensities, trees in Borneo are more vulnerable than trees in the Amazon. There is some evidence for lagged impacts of drought, with mortality rates remaining elevated 2 yr after the meteorological event is over. These findings indicate that repeated droughts would shift the functional composition of tropical forests toward smaller, denser-wooded trees. At very high drought intensities, the linear relationship between tree mortality and moisture stress apparently breaks down, suggesting the existence of moisture stress thresholds beyond which some tropical forests would suffer catastrophic tree mortality. |
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[Phillips, Oliver L.; van der Heijden, Geertje; Lewis, Simon L.; Lopez-Gonzalez, Gabriela; Lloyd, Jon; Baker, Tim R.; Chao, Kuo-Jung; Feldpausch, Ted R.; Fyllas, Nikolaos M.; Gloor, Emanuel; Honorio, Euridice; Keeling, Helen; Quesada, Carlos A.; Schwarz, Michael] Univ Leeds, Sch Geog, Leeds LS2 9JT, W Yorkshire, England, Email: o.phillips@leeds.ac.uk |
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WILEY-BLACKWELL PUBLISHING, INC |
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0028-646X |
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ISI:000280122500028 |
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EcoFoG @ eric.marcon @ |
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50 |
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Touchard, A.; Dauvois, M.; Arguel, M.-J.; Petitclerc, F.; Leblanc, M.; Dejean, A.; Orivel, J.; Nicholson, G.M.; Escoubas, P. |
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Elucidation of the unexplored biodiversity of ant venom peptidomes via MALDI-TOF mass spectrometry and its application for chemotaxonomy |
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Journal Article |
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2014 |
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Journal of Proteomics |
Abbreviated Journal |
J. Proteomics |
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105 |
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217-231 |
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Ant venom; Chemotaxonomy; Maldi-Tof Ms; Peptide; Peptidome; Ponerinae; ant venom; cytochrome c oxidase; ant; article; biodiversity; chemotaxonomy; correlational study; DNA sequence; French Guiana; Hymenoptera; matrix assisted laser desorption ionization time of flight mass spectrometry; mitochondrial gene; nonhuman; Odontomachus biumbonatus; Odontomachus haematodus; Odontomachus hastatus; Odontomachus mayi; Odontomachus scalptus; Pachcondyla apicalis; Pachcondyla arhuaca; Pachcondyla commutata; Pachcondyla constricta; Pachcondyla crassinola; Pachcondyla goeldii; Pachcondyla inversa; Pachcondyla marginata; Pachcondyla procidua; Pachcondyla stigma; Pachcondyla verenae; Pachcondyla villosa; peptidomics; phylogeny; priority journal; Animalia; Formicidae; Hymenoptera; Odontomachus; Pachycondyla; Pachycondyla apicalis; Pachycondyla stigma; Ponerinae |
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The rise of integrative taxonomy, a multi-criteria approach used in characterizing species, fosters the development of new tools facilitating species delimitation. Mass spectrometric (MS) analysis of venom peptides from venomous animals has previously been demonstrated to be a valid method for identifying species. Here we aimed to develop a rapid chemotaxonomic tool for identifying ants based on venom peptide mass fingerprinting. The study focused on the biodiversity of ponerine ants (Hymenoptera: Formicidae: Ponerinae) in French Guiana. Initial experiments optimized the use of automated matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) to determine variations in the mass profiles of ant venoms using several MALDI matrices and additives. Data were then analyzed via a hierarchical cluster analysis to classify the venoms of 17 ant species. In addition, phylogenetic relationships were assessed and were highly correlated with methods using DNA sequencing of the mitochondrial gene cytochrome c oxidase subunit 1. By combining a molecular genetics approach with this chemotaxonomic approach, we were able to improve the accuracy of the taxonomic findings to reveal cryptic ant species within species complexes. This chemotaxonomic tool can therefore contribute to more rapid species identification and more accurate taxonomies. Biological significance: This is the first extensive study concerning the peptide analysis of the venom of both Pachycondyla and Odontomachus ants. We studied the venoms of 17 ant species from French Guiana that permitted us to fine-tune the venom analysis of ponerine ants via MALDI-TOF mass spectrometry. We explored the peptidomes of crude ant venom and demonstrated that venom peptides can be used in the identification of ant species. In addition, the application of this novel chemotaxonomic method combined with a parallel genetic approach using COI sequencing permitted us to reveal the presence of cryptic ants within both the Pachycondyla apicalis and Pachycondyla stigma species complexes. This adds a new dimension to the search for means of exploiting the enormous biodiversity of venomous ants as a source for novel therapeutic drugs or biopesticides. This article is part of a Special Issue entitled: Proteomics of non-model organisms. © 2014 Elsevier B.V. |
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Neurotoxin Research Group, School of Medical and Molecular Biosciences, University of Technology, Sydney, NSW, Australia |
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Elsevier |
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18767737 (Issn) |
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Cited By (since 1996):1; Export Date: 30 July 2014; Correspondence Address: Touchard, A.; UMR-EcoFoG, Campus Agronomique, BP 316, 97379 Kourou Cedex, France; email: axel.touchard@ecofog.gf; Chemicals/CAS: cytochrome c oxidase, 72841-18-0, 9001-16-5 |
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EcoFoG @ webmaster @ |
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555 |
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