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| Author |
Talaga, S.; Leroy, C.; Guidez, A.; Dusfour, I.; Girod, R.; Dejean, A.; Murienne, J. |
| Title |
DNA reference libraries of French Guianese mosquitoes for barcoding and metabarcoding |
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Journal Article |
| Year |
2017 |
Publication |
PLoS ONE |
Abbreviated Journal |
PLoS ONE |
| Volume |
12 |
Issue |
6 |
Pages |
e0176993 |
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Abstract  |
The mosquito family (Diptera: Culicidae) constitutes the most medically important group of arthropods because certain species are vectors of human pathogens. In some parts of the world, the diversity is so high that the accurate delimitation and/or identification of species is challenging. A DNA-based identification system for all animals has been proposed, the socalled DNA barcoding approach. In this study, our objectives were (i) to establish DNA barcode libraries for the mosquitoes of French Guiana based on the COI and the 16S markers, (ii) to compare distance-based and tree-based methods of species delimitation to traditional taxonomy, and (iii) to evaluate the accuracy of each marker in identifying specimens. A total of 266 specimens belonging to 75 morphologically identified species or morphospecies were analyzed allowing us to delimit 86 DNA clusters with only 21 of them already present in the BOLD database. We thus provide a substantial contribution to the global mosquito barcoding initiative. Our results confirm that DNA barcodes can be successfully used to delimit and identify mosquito species with only a few cases where the marker could not distinguish closely related species. Our results also validate the presence of new species identified based on morphology, plus potential cases of cryptic species. We found that both COI and 16S markers performed very well, with successful identifications at the species level of up to 98% for COI and 97% for 16S when compared to traditional taxonomy. This shows great potential for the use of metabarcoding for vector monitoring and eco-epidemiological studies. © 2017 Talaga et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
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UMR EDB, CNRS, ENFA, Université de Toulouse Paul Sabatier, Toulouse, France |
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Export Date: 22 June 2017 |
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no |
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EcoFoG @ webmaster @ |
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757 |
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Perrot, T.; Schwartz, M.; Saiag, F.; Salzet, G.; Dumarçay, S.; Favier, F.; Gérardin, P.; Girardet, J.-M.; Sormani, R.; Morel-Rouhier, M.; Amusant, N.; Didierjean, C.; Gelhaye, E. |
| Title |
Fungal Glutathione Transferases as Tools to Explore the Chemical Diversity of Amazonian Wood Extractives |
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Journal Article |
| Year |
2018 |
Publication |
ACS Sustainable Chem. Eng. |
Abbreviated Journal |
ACS Sustainable Chemistry & Engineering |
| Volume |
6 |
Issue |
10 |
Pages |
13078-13085 |
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| Abstract |
The natural durability of wood is linked to its chemical composition and in particular the presence of metabolites called extractives that often possess chemical reactivity. For dealing with these compounds, wood degraders have developed detoxification systems usually involving enzyme families. Among these enzymes, glutathione transferases (GSTs) are involved in the decrease of the reactivity of toxic compounds. In this study, the hypothesis that the detoxification systems of wood decaying fungi could be indicators of the chemical reactivity of wood extracts has been tested. This approach has been evaluated using 32 wood extracts coming from French Guiana species, testing their antimicrobial ability, antioxidative properties, and reactivity against six GSTs from the white rot Trametes versicolor. From the obtained data, a significant correlation between the antimicrobial and antioxidative properties of the tested wood extracts and GST interactions was established. In addition, the chemical analysis performed on one of the most reactive extracts (an acetonic extract of Bagassa guianensis) has demonstrated oxyresveratrol as a major constituent. We were able to cocrystallize one GST with this commercially interesting compound. Taken together, the presented data support the hypothesis that detoxifying enzymes could be used to identify the presence of molecules of industrial interest in wood extracts. |
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American Chemical Society |
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doi: 10.1021/acssuschemeng.8b02636 |
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EcoFoG @ webmaster @ |
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854 |
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Perrot, T.; Guillaume, S.; Nadine, A.; Jacques, B.; Philippe, G.; Stéphane, D.; Rodnay, S.; Mélanie, M.-R.; Eric, G. |
| Title |
A reverse chemical ecology approach to explore wood natural durability |
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Journal Article |
| Year |
2020 |
Publication |
Microbial Biotechnology |
Abbreviated Journal |
Microb. Biotechnol. |
| Volume |
13 |
Issue |
5 |
Pages |
1673-1677 |
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glutathione transferase; Article; biodegradation; data base; detoxification; ecology; enzyme activity; enzyme metabolism; forest; molecular dynamics; physical parameters; species identification; thermal analysis; Trametes versicolor; wood; wood durability |
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The natural durability of wood species, defined as their inherent resistance to wood-destroying agents, is a complex phenomenon depending on many biotic and abiotic factors. Besides the presence of recalcitrant polymers, the presence of compounds with antimicrobial properties is known to be important to explain wood durability. Based on the advancement in our understanding of fungal detoxification systems, a reverse chemical ecology approach was proposed to explore wood natural durability using fungal glutathione transferases. A set of six glutathione transferases from the white-rot Trametes versicolor were used as targets to test wood extracts from seventeen French Guiana neotropical species. Fluorescent thermal shift assays quantified interactions between fungal glutathione transferases and these extracts. From these data, a model combining this approach and wood density significantly predicts the wood natural durability of the species tested previously using long-term soil bed tests. Overall, our findings confirm that detoxification systems could be used to explore the chemical environment encountered by wood-decaying fungi and also wood natural durability. © 2020 The Authors. Microbial Biotechnology published by John Wiley & Sons Ltd and Society for Applied Microbiology. |
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Université de Lorraine, INRAE, LERMAB, Nancy, France |
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John Wiley and Sons Ltd |
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17517907 (Issn) |
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EcoFoG @ webmaster @ |
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955 |
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Vedel, V.; Rheims, C.; Murienne, J.; Brescovit, A.D. |
| Title |
Biodiversity baseline of the French Guiana spider fauna |
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Journal Article |
| Year |
2013 |
Publication |
SpringerPlus |
Abbreviated Journal |
SpringerPlus |
| Volume |
2 |
Issue |
1 |
Pages |
1-19 |
| Keywords |
Arachnids; Araneae; Bio monitoring; French Guiana; Neotropics; Species richness |
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The need for an updated list of spiders found in French Guiana rose recently due to many upcoming studies planned. In this paper, we list spiders from French Guiana from existing literature (with corrected nomenclature when necessary) and from 2142 spiders sampled in 12 sites for this baseline study. Three hundred and sixty four validated species names of spider were found in the literature and previous authors' works. Additional sampling, conducted for this study added another 89 identified species and 62 other species with only a genus name for now. The total species of spiders sampled in French Guiana is currently 515. Many other Morphospecies were found but not described as species yet. An accumulation curve was drawn with seven of the sampling sites and shows no plateau yet. Therefore, the number of species inhabiting French Guiana cannot yet be determined. As the very large number of singletons found in the collected materials suggests, the accumulation curve indicates nevertheless that more sampling is necessary to discover the many unknown spider species living in French Guiana, with a focus on specific periods (dry season and wet season) and on specific and poorly studied habitats such as canopy, inselberg and cambrouze (local bamboo monospecific forest). © 2013 Vedel et al. |
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CNRS, EFA, UMR 5174 EDB (Laboratoire Evolution et Diversité Biologique), Université Paul Sabatier, 118 route de Narbonne, F-31062 Toulouse, France |
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21931801 (Issn) |
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Export Date: 25 November 2013; Source: Scopus; doi: 10.1186/2193-1801-2-361; Language of Original Document: English; Correspondence Address: Vedel, V.; Laboratoire d'entomologie Entobios, 5 Bis rue François Thomas, 97310 Kourou, Guyane Française, France; email: vincent.vedel@ecofog.gf |
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no |
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EcoFoG @ webmaster @ |
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510 |
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Dejean, A.; Petitclerc, F.; Compin, A.; Azémar, F.; Corbara, B.; Delabie, J.H.C.; Leroy, C. |
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Hollow internodes permit a neotropical understory plant to shelter multiple mutualistic ant species, obtaining protection and nutrient provisioning (myrmecotrophy) |
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Journal Article |
| Year |
2017 |
Publication |
American Naturalist |
Abbreviated Journal |
American Naturalist |
| Volume |
190 |
Issue |
5 |
Pages |
E124-E131 |
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Ant-plant relationships; Biotic protection; Mutualism; Myrmecotrophy; Stable isotopes; Tachia guianensis |
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The Neotropical understory plant Tachia guianensis (Gentianaceae)- known to shelter the colonies of several ant species in its hollow trunks and branches-does not provide them with food rewards (e.g., extrafloral nectar). We tested whether these ants are opportunistic nesters or whether mutualistic relationships exist as for myrmecophytes or plants sheltering ant colonies in specialized hollow structures in exchange for protection from enemies and/or nutrient provisioning (myrmecotrophy). We noted 37 ant species sheltering inside T. guianensis internodes, three of them accounting for 43.5% of the cases. They protect their host plants from leaf-cutting ant defoliation and termite damage because individuals devoid of associated ants suffered significantly more attacks. Using the stable isotope 15N, we experimentally showed that the tested ant species furnish their host plants with nutrients. Therefore, a mutualism exists. However, because it is associated with numerous ant species, T. guianensis can be considered a nonspecialized myrmecophyte. © 2017 by The University of Chicago. |
| Address |
Institut de Recherche pour le Développement, UMR botAnique et Modélisation de l’Archtecture des Plantes et des Végétations, Cirad, CNRS, INRA, Université de Montpellier, Boulevard de la Lironde, TA A-51/PS2, Montpellier cedex 5, Brazil |
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Export Date: 2 November 2017 |
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no |
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EcoFoG @ webmaster @ |
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768 |
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Epron, D.; Bosc, A.; Bonal, D.; Freycon, V. |
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Spatial variation of soil respiration across a topographic gradient in a tropical rain forest in French Guiana |
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Journal Article |
| Year |
2006 |
Publication |
Journal of Tropical Ecology |
Abbreviated Journal |
J. Trop. Ecol. |
| Volume |
22 |
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565-574 |
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acrisol; carbon balance; carbon flux; gleysol; root biomass |
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The objective of this study was to analyse the factors explaining spatial variation in soil respiration over topographic transects in a tropical rain forest of French Guiana. The soil of 30 plots along six transects was characterized. The appearance of the 'dry to the touch' character at a depth of less than 1.2 m was used to discriminate soils exhibiting vertical drainage from soils exhibiting superficial lateral drainage and along with colour and texture, to define five classes from well-drained to strongly hydromorphic soils. Spatial variation in soil respiration was closely related to topographic position and soil type. Increasing soil water content and bulk density and decreasing root biomass and soil carbon content explained most of the decrease in soil respiration from the plateaux (vertically drained hypoferralic acrisol) to the bottomlands (haplic gleysol). These results will help to stratify further field experiments and to identify the underlying determinants of spatial variation in soil respiration to develop mechanistic models of soil respiration. |
| Address |
Univ Nancy 1, UMR 1137, INRA, UHP Ecol & Ecophysiol Forestieres,Fac Sci, F-54506 Vandoeuvre Les Nancy, France, Email: Daniel.Epron@scbiol.uhp-nancy.fr |
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CAMBRIDGE UNIV PRESS |
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0266-4674 |
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ISI:000239975200008 |
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no |
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EcoFoG @ eric.marcon @ |
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179 |
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Leroy, C.; Jauneau, A.; Quilichini, A.; Dejean, A.; Orivel, J. |
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Comparative Structure and Ontogeny of the Foliar Domatia in Three Neotropical Myrmecophytes |
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Journal Article |
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2010 |
Publication |
American Journal of Botany |
Abbreviated Journal |
Am. J. Bot. |
| Volume |
97 |
Issue |
4 |
Pages |
557-565 |
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anatomy; ant-plant mutualism; Chrysobalanaceae; domatia; French Guiana; Hirtella physophora; Maieta guianensis; Melastomataceae; myrmecophyte; ontogeny; Tococa guianensis |
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The origin and timing of the appearance of leaf domatia during the ontogeny of plants are important evolutionary traits driving the maintenance of ant-plant associations. In this study conducted in French Guiana on Hirtella physophora, Maieta guianensis, and Tococa guianensis, we focused on the formation and development of leaf domatia having different morphological origins. We modeled the timing of the onset of these domatia, then compared their morpho-anatomical structure. Although the ontogenetic development of the domatia differed between species, they developed very early in the plant's ontogeny so that we did not note differences in the timing of the onset of these domatia. For H. physophora seedlings, a transitional leaf forms before the appearance of fully developed domatia, whereas in M. guianensis and T. guianensis the domatia forms abruptly without transitional leaves. Moreover, in all cases, the morpho-anatomical structure of the domatia differed considerably from the lamina. All three species had similar morpho-anatomical characteristics for the domatia, indicating a convergence in their structural and functional characteristics. This convergence between taxonomically distant plant species bearing domatia having different morphological origins could be interpreted as a product of the plant's evolution toward the morphology and anatomy most likely to maximize ant recruitment and long-term residence. |
| Address |
[Leroy, Celine; Dejean, Alain] CNRS, Unite Mixte Rech Ecol Forets Guyane, F-97379 Kourou, France, Email: Celine.Leroy@ecofog.gf |
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BOTANICAL SOC AMER INC |
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0002-9122 |
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ISI:000276045500003 |
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no |
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EcoFoG @ eric.marcon @ |
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65 |
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Schimann, H.; Bach, C.; Lengelle, J.; Louisanna, E.; Barantal, S.; Murat, C.; Buée, M. |
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Diversity and Structure of Fungal Communities in Neotropical Rainforest Soils: The Effect of Host Recurrence |
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Journal Article |
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2017 |
Publication |
Microbial Ecology |
Abbreviated Journal |
Microbial Ecology |
| Volume |
73 |
Issue |
2 |
Pages |
310-320 |
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Amazonian forest; Fungal communities; Host recurrence; Litter; Second-generation sequencing; Soil |
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The patterns of the distribution of fungal species and their potential interactions with trees remain understudied in Neotropical rainforests, which harbor more than 16,000 tree species, mostly dominated by endomycorrhizal trees. Our hypothesis was that tree species shape the non-mycorrhizal fungal assemblages in soil and litter and that the diversity of fungal communities in these two compartments is partly dependent on the coverage of trees in the Neotropical rainforest. In French Guiana, a long-term plantation and a natural forest were selected to test this hypothesis. Fungal ITS1 regions were sequenced from soil and litter samples from within the vicinity of tree species. A broad range of fungal taxa was found, with 42 orders and 14 classes. Significant spatial heterogeneity in the fungal communities was found without strong variation in the species richness and evenness among the tree plots. However, tree species shaped the fungal assemblages in the soil and litter, explaining up to 18 % of the variation among the communities in the natural forest. These results demonstrate that vegetation cover has an important effect on the structure of fungal assemblages inhabiting the soil and litter in Amazonian forests, illustrating the relative impact of deterministic processes on fungal community structures in these highly diverse ecosystems. © 2016, Springer Science+Business Media New York. |
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Equipe Environnement et Microbiologie, Institut Pluridisciplinaire de Recherche en Environnement et Matériaux, Université de Pau et Pays de l’Adour, Pau, France |
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Export Date: 19 February 2017 |
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EcoFoG @ webmaster @ |
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734 |
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Petit, M.; Céréghino, R.; Carrias, J.-F.; Corbara, B.; Dezerald, O.; Petitclerc, F.; Dejean, A.; Leroy, C. |
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Are ontogenetic shifts in foliar structure and resource acquisition spatially conditioned in tank-bromeliads? |
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Journal Article |
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2014 |
Publication |
Botanical Journal of the Linnean Society |
Abbreviated Journal |
Bot J Linn Soc |
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175 |
Issue |
2 |
Pages |
299-312 |
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Aechmea mertensii; Camponotus femoratus; French Guiana; leaf traits; mutualistic ants; natural stable isotopes; ontogeny; Pachycondyla goeldii; phenotypic plasticity; plant morphology |
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The phenotypic plasticity of plants has been explored as a function of either ontogeny (apparent plasticity) or environment (adaptive plasticity), although few studies have analyzed these factors together. In the present study, we take advantage of the dispersal of Aechmea mertensii bromeliads by Camponotus femoratus or Pachycondyla goeldii ants in shaded and sunny environments, respectively, to quantify ontogenetic changes in morphological, foliar, and functional traits, and to analyze ontogenetic and ant species effects on 14 traits. Most of the morphological (plant height, number of leaves), foliar (leaf thickness, leaf mass area, total water content, trichome density), and functional (leaf δ13C) traits differed as a function of ontogeny. Conversely, only leaf δ15N showed an adaptive phenotypic plasticity. On the other hand, plant width, tank width, longest leaf length, stomatal density, and leaf C concentration showed an adaptation to local environment with ontogeny. The exception was leaf N concentration, which showed no trend at all. Aechmea mertensii did not show an abrupt morphological modification such as in heteroblastic bromeliads, although it was characterized by strong, size-related functional modifications for CO2 acquisition. The adaptive phenotypic variation found between the two ant species indicates the spatially conditioned plasticity of A. mertensii in the context of insect-assisted dispersal. However, ant-mediated effects on phenotypic plasticity in A. mertensii are not obvious because ant species and light environment are confounding variables. © 2014 The Linnean Society of London, Botanical Journal of the Linnean Society, 2014, 175, 299–312. |
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1095-8339 |
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EcoFoG @ webmaster @ |
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564 |
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Faucheux, M.J.; Gibernau, M. |
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Antennal sensilla in five Psychodini moth flies (Diptera: Psychodidae: Psychodinae) pollinators of Arum spp. (Araceae) |
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Journal Article |
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2011 |
Publication |
Annales de la Societe Entomologique de France |
Abbreviated Journal |
Ann. Soc. Entomol. Fr. |
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47 |
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1-2 |
Pages |
89-100 |
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Chodopsycha; Deceptive pollination; Logima; Psycha; Psychoda |
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The pollination of the genus Arum (Araceae) is mainly achieved by deception, the floral odour mimicking the pollinator ovipositing site. In order to discover the sensory organs involved in this attraction, we have studied the antennae of five species of psychodine moth-flies (former Psychoda sensu lato = Psychodini), pollinators of Arum spp. The antennae of the five Psychodini reveal seven types of sensilla: multiporous tribranched sensilla basiconica (sensilla ascoidea), multiporous sensilla basiconica, multiporous sensilla coeloconica, multiporous sensilla auricillica, uniporous sensilla basiconica, aporous sensilla chaetica, aporous Böhm's sensilla. Each species possesses three, five or six of these sensillum types. All the multiporous sensilla are probably olfactory receptors while the uniporous sensilla basiconica must possess a contact chemoreceptive function. The multiporous tribranched sensilla basiconica (s. ascoidea), present in all the species, are the best candidates for the reception of the odours given off by the ovipositing sites and the inflorescences of Arum. The multiporous sensilla basiconica and the multiporous sensilla coeloconica may be involved respectively as CO2 receptors or thermoreceptors. Psychoda phalaenoides, which is the main pollinator of A. maculatum, is the species which possesses the largest number of antennal sensilla. The sexual dimorphism, studied only in Psycha grisescens, as concerns the number of sensilla and the absence of a sensillum type which differ according to sex, is difficult to interpret. |
| Address |
CNRS – Ecofog UMR 8172, BP 709, F-97387 Kourou, France |
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00379271 (Issn) |
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Export Date: 26 October 2011; Source: Scopus; Language of Original Document: English; Correspondence Address: Faucheux, M.J.; Université de Nantes, Laboratoire d'Endocrinologie des Insectes Sociaux, 2 rue de la Houssinière, F-44322 Nantes Cedex 03, France; email: faucheux.michel@free.fr |
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EcoFoG @ webmaster @ |
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365 |
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