| Records |
| Author |
Honorio Coronado, E.N.; Blanc-Jolivet, C.; Mader, M.; García-Dávila, C.R.; Gomero, D.A.; del Castillo Torres, D.; Llampazo, G.F.; Pizango, G.H.; Sebbenn, A.M.; Meyer-Sand, B.R.V.; Paredes-Villanueva, K.; Tysklind, N.; Troispoux, V.; Massot, M.; Carvalho, C.; de Lima, H.C.; Cardoso, D.; Degen, B. |
| Title |
SNP markers as a successful molecular tool for assessing species identity and geographic origin of trees in the economically important South American legume genus Dipteryx |
Type |
Journal Article |
| Year |
2020 |
Publication |
Journal of Heredity |
Abbreviated Journal |
J. Hered. |
| Volume |
111 |
Issue |
4 |
Pages |
346-356 |
| Keywords |
Cumaru; Genetic assignment; Leguminosae; Timber verification; article; chloroplast; genetic association; genetic marker; geographic origin; indel mutation; nonhuman; single nucleotide polymorphism; species identification; structure analysis; tonka bean; Dipteryx; Fabaceae |
Abstract  |
Dipteryx timber has been heavily exploited in South America since 2000s due to the increasing international demand for hardwood. Developing tools for the genetic identification of Dipteryx species and their geographical origin can help to promote legal trading of timber. A collection of 800 individual trees, belonging to 6 different Dipteryx species, was genotyped based on 171 molecular markers. After the exclusion of markers out of Hardy-Weinberg equilibrium or with no polymorphism or low amplification, 83 nuclear, 29 chloroplast, 13 mitochondrial single nucleotide polymorphisms (SNPs), and 2 chloroplast and 5 mitochondrial INDELS remained. Six genetic groups were identified using Bayesian Structure analyses of the nuclear SNPs, which corresponded to the different Dipteryx species collected in the field. Seventeen highly informative markers were identified as suitable for species identification and obtained self-assignment success rates to species level of 78-96%. An additional set of 15 molecular markers was selected to determine the different genetic clusters found in Dipteryx odorata and Dipteryx ferrea, obtaining self-assignment success rates of 91-100%. The success to assign samples to the correct country of origin using all or only the informative markers improved when using the nearest neighbor approach (69-92%) compared to the Bayesian approach (33-80%). While nuclear and chloroplast SNPs were more suitable for differentiating the different Dipteryx species, mitochondrial SNPs were ideal for determining the genetic clusters of D. odorata and D. ferrea. These 32 selected SNPs will be invaluable genetic tools for the accurate identification of species and country of origin of Dipteryx timber. © The American Genetic Association 2020. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com |
| Address |
Instituto de Biologia, Universidade Federal da Bahia, Rua Barão de Jeremoabo, s.n., Ondina, Salvador, BA, 40170-115, Brazil |
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| Publisher |
Oxford University Press |
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Original Title |
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Edition |
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| ISSN |
00221503 (Issn) |
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no |
| Call Number |
EcoFoG @ webmaster @ |
Serial |
965 |
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| Author |
Laurans, M.; Herault, B.; Vieilledent, G.; Vincent, G. |
| Title |
Vertical stratification reduces competition for light in dense tropical forests |
Type |
Journal Article |
| Year |
2014 |
Publication |
Forest Ecology and Management |
Abbreviated Journal |
For. Ecol. Manage. |
| Volume |
329 |
Issue |
|
Pages |
79-88 |
| Keywords |
Adult stature; French Guiana; Hierarchical bayesian model; Local crowding; Niche partitioning; Bayesian networks; Growth rate; Adult stature; French Guiana; Hierarchical Bayesian modeling; Local crowding; Niche partitioning; Reforestation |
| Abstract |
Differential growth response to light level is widely accepted as a potential mechanism for maintaining tree species richness in tropical forests. The position of tree species in the hierarchy of the canopy is considered an important indicator of species light capture and growth strategy. Paradoxically, the relative importance of species identity and competition for light in determining individual tree growth is poorly documented at the adult stage. In this study, we used a hierarchical Bayesian model to quantify the overall importance of species identity, light and belowground competition as determinants of tree growth in French Guiana tropical forest. Light competitive status is assessed by a crown exposure score and below ground competition is estimated from local crowding. We examined species sensitivity to both types of competition in relation to adult stature. Our results are based on annual diameter increments of more than 13,510 stems from 282 species monitored over 10years. Mean annual growth rate was 0.11cmy-1 with species identity explaining 35% of the individual variation in growth rate. Crown exposure and local crowding explained 3.5% and 2.4% of the variation in growth rate, respectively. Predicted changes in growth rate as crown exposure (resp. local crowding) index changed from lower to upper interquartile level was 0.03cmy-1 (resp. 0.02cmy-1). Species sensitivity to crown exposure and to local crowding were positively correlated (i) with predicted growth rate at high-light standardized conditions and (ii) with adult stature.This vertical niche partitioning is invoked to explain the limited contribution made by level of light competition for predicting individual tropical tree growth as the community-level response is dominated by the abundance of small-statured species with low sensitivity to light level.Light appears to drive the stem growth rate of tropical trees through species differentiation more than through individual tree growth limitation. This vertical stratification complements the previously reported regeneration niche and together these provide evidence for light niche partitioning in the three-dimensional space of tropical forests. © 2014 Elsevier B.V. |
| Address |
IRD, UMR AMAP, TA A-51/PS1, Bd de la Lironde, 34398 Montpellier Cedex 5, France |
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Thesis |
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| Publisher |
Elsevier |
Place of Publication |
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Summary Language |
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Original Title |
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Series Title |
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Abbreviated Series Title |
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Series Issue |
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Edition |
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| ISSN |
03781127 (Issn) |
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| Notes |
Export Date: 30 July 2014; Coden: Fecmd; Correspondence Address: Laurans, M.; CIRAD, UMR AMAP, TA A-51/PS1, Bd de la Lironde, 34398 Montpellier Cedex 5, France; email: laurans@cirad.fr |
Approved |
no |
| Call Number |
EcoFoG @ webmaster @ |
Serial |
551 |
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| Author |
Ziegler, C.; Dusenge, M.E.; Nyirambangutse, B.; Zibera, E.; Wallin, G.; Uddling, J. |
| Title |
Contrasting Dependencies of Photosynthetic Capacity on Leaf Nitrogen in Early- and Late-Successional Tropical Montane Tree Species |
Type |
Journal Article |
| Year |
2020 |
Publication |
Frontiers in Plant Science |
Abbreviated Journal |
Front. Plant Sci. |
| Volume |
11 |
Issue |
|
Pages |
500479 |
| Keywords |
allocation; early successional; late successional; nitrogen; photosynthesis; tropical montane forests |
| Abstract |
Differences in photosynthetic capacity among tree species and tree functional types are currently assumed to be largely driven by variation in leaf nutrient content, particularly nitrogen (N). However, recent studies indicate that leaf N content is often a poor predictor of variation in photosynthetic capacity in tropical trees. In this study, we explored the relative importance of area-based total leaf N content (Ntot) and within-leaf N allocation to photosynthetic capacity versus light-harvesting in controlling the variation in photosynthetic capacity (i.e. Vcmax, Jmax) among mature trees of 12 species belonging to either early (ES) or late successional (LS) groups growing in a tropical montane rainforest in Rwanda, Central Africa. Photosynthetic capacity at a common leaf temperature of 25˚C (i.e. maximum rates of Rubisco carboxylation, Vcmax25 and of electron transport, Jmax25) was higher in ES than in LS species (+ 58% and 68% for Vcmax25 and Jmax25, respectively). While Ntot did not significantly differ between successional groups, the photosynthetic dependency on Ntot was markedly different. In ES species, Vcmax25 was strongly and positively related to Ntot but this was not the case in LS species. However, there was no significant trade-off between relative leaf N investments in compounds maximizing photosynthetic capacity versus compounds maximizing light harvesting. Both leaf dark respiration at 25˚C (+ 33%) and, more surprisingly, apparent photosynthetic quantum yield (+ 35%) was higher in ES than in LS species. Moreover, Rd25 was positively related to Ntot for both ES and LS species. Our results imply that efforts to quantify carbon fluxes of tropical montane rainforests would be improved if they considered contrasting within-leaf N allocation and photosynthetic Ntot dependencies between species with different successional strategies. © Copyright © 2020 Ziegler, Dusenge, Nyirambangutse, Zibera, Wallin and Uddling. |
| Address |
Department of Biology, The University of Western Ontario, London, ON, Canada |
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Thesis |
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| Publisher |
Frontiers Media S.A. |
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Summary Language |
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Original Title |
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Series Title |
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Abbreviated Series Title |
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Edition |
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| ISSN |
1664462x (Issn) |
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| Notes |
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Approved |
no |
| Call Number |
EcoFoG @ webmaster @ |
Serial |
953 |
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| Author |
Latouche-Hallé, C.; Ramboer, A.; Bandou, E.; Caron, H.; Kremer, A. |
| Title |
Nuclear and chloroplast genetic structure indicate fine-scale spatial dynamics in a neotropical tree population |
Type |
Journal Article |
| Year |
2003 |
Publication |
Heredity |
Abbreviated Journal |
Heredity |
| Volume |
91 |
Issue |
2 |
Pages |
181-190 |
| Keywords |
Dicorynia guianensis; Gene flow; Genetic differentiation; Microsatellites; Spatial analysis; Tropical tree; gene flow; genetic structure; population genetics; spatial analysis; tree; tropical forest; Cell Nucleus; Chloroplasts; Cohort Studies; DNA, Plant; French Guiana; Genetic Markers; Pollen; Population Dynamics; Seeds; Trees; Variation (Genetics); French Guiana; Dicorynia guianensis; Embryophyta |
| Abstract |
Dicorynia guianensis is a canopy tree, endemic to the tropical rain forest of French Guiana. We compared generational and spatial genetic structure for maternally and biparentally inherited markers in two cohorts (adult and seedling) in order to infer processes shaping the distribution of genetic diversity. The study was conducted on a 40 ha study plot located at Paracou near Kourou, where 172 adults trees and 375 saplings were sampled. Aggregation of trees was therefore suggested at different distances, ranging from 100 to 400 m. There was a strong link between demographic and genetic spatial structures at small distances (less than 100 m) that is likely to be the consequence of restricted seed dispersal. Genetic differentiation was more pronounced between spatial aggregates than between cohorts. Despite the spatial differentiation, the species was able to maintain high levels of diversity for maternal genomes, suggesting rapid turnover of aggregates. Spatial autocorrelation was larger for chloroplast than nuclear markers indicating a strong asymmetry between pollen and seed flow. Fixation indices indicated a lower heterozygote deficiency for the adults, maybe because of gradual elimination of selfed trees. Genetic relatedness at lower distances was higher in adult trees than in saplings, as a result of generation overlapping in the adult cohort. Overall, our results confirm earlier biological knowledge about the dispersion mechanisms of the species, and lead to an enhanced role of spatial processes in the dynamics of genetic diversity of D. guianensis. |
| Address |
INRA Lab. Genet. Arbres Forestiers, BP45, 33611 Gazinet Cedex, France |
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Place of Publication |
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Summary Language |
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Series Title |
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Abbreviated Series Title |
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Edition |
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0018067x (Issn) |
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| Notes |
Cited By (since 1996): 34; Export Date: 22 October 2011; Source: Scopus; Coden: Hdtya; doi: 10.1038/sj.hdy.6800296; PubMed ID: 12886285; Language of Original Document: English; Correspondence Address: Caron, H.; INRA Lab. Genet. Arbres Forestiers, BP45, 33611 Gazinet Cedex, France; email: caron@pierroton.inra.fr; Chemicals/CAS: DNA, Plant; Genetic Markers |
Approved |
no |
| Call Number |
EcoFoG @ webmaster @ |
Serial |
358 |
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| Author |
Amusant, N.; Beauchene, J.; Fournier, M.; Janin, G.; Thevenon, M.F. |
| Title |
Decay resistance in Dicorynia guianensis Amsh.: analysis of inter-tree and intra-tree variability and relations with wood colour |
Type |
Journal Article |
| Year |
2004 |
Publication |
Annals of Forest Science |
Abbreviated Journal |
Ann. For. Sci. |
| Volume |
61 |
Issue |
4 |
Pages |
373-380 |
| Keywords |
Dicorynia guianensis; Amazonian wood; wood colour/decay resistance; heartwood; variability |
| Abstract |
Dicorynia guianensis Amsh. is very widespread in the forests of French Guiana and moreover is the leading species harvested in this area, but its main defect remains the great variability of wood durability, especially with respect to fungal decay. The aim of this work was to study this inter- and intra-tree variability in order to identify the parameters responsible for this variation (growth area, height and radial position) within the tree. The resistance decrease from the outer heartwood to the pith. Measurement of colour variation using the CIELAB (L*, a*, b*, C*, h*) system was performed at the intra-tree level to highlight the longitudinal and radial gradients of variation. Dicorynia guianensis becomes less red and dark from the outer to the inner heartwood and from the base to the top. Lastly, variations of colour and durability were correlated: the wood is less resistant the redder and darker it is. |
| Address |
CIRAD Foret, Forest Prod Programme, F-34398 Montpellier 5, France, Email: nadine.amusant@cirad.fr |
| Corporate Author |
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Thesis |
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| Publisher |
E D P SCIENCES |
Place of Publication |
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Summary Language |
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Original Title |
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Series Title |
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Abbreviated Series Title |
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Series Issue |
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Edition |
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| ISSN |
1286-4560 |
ISBN |
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Medium |
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| Notes |
ISI:000223955500009 |
Approved |
no |
| Call Number |
EcoFoG @ eric.marcon @ |
Serial |
262 |
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| Author |
Salas-Lopez, A.; Talaga, S.; Lalague, H. |
| Title |
The discovery of devil's gardens: An ant-plant mutualism in the cloud forests of the Eastern Amazon |
Type |
Journal Article |
| Year |
2016 |
Publication |
Journal of Tropical Ecology |
Abbreviated Journal |
Journal of Tropical Ecology |
| Volume |
32 |
Issue |
3 |
Pages |
264-268 |
| Keywords |
ant-plant interactions; biogeography; cloud forest; Cordia nodosa; mutualism, Myrmelachista; refuge hypothesis |
| Abstract |
Devil's gardens are one of the most remarkable mutualistic associations between ants and plants. Myrmelachista ants eliminate all vegetation from around their host plants, resulting in wide forest clearings which have intrigued scientists from the start. Despite their noticeability, here we report the discovery of devil's gardens in remote highland cloud forests of the Eastern Amazon, more than 2000 km away from their nearest known analogues in Western Amazonia. We describe the ecological characteristics of these gardens and consider what factors could have produced the geographic isolation of Eastern Amazonian devil's gardens. Three hypotheses are investigated: (1) the host plant distribution restricts the distribution of the mutualism, (2) the ecological tolerances of Myrmelachista explain the isolation, and (3) the devil's gardens of the Eastern Amazon constitute relicts from ancient forest refugia. The distribution of the possible associated myrmecophytes and previously described ecological ranges of devil's gardens cannot explain their ecological restriction to cloud forests in Eastern Amazonia, but our discovery is consistent with the biogeographic refuge hypothesis (i.e. highlands along the Amazon Basin constitute refugia for humid forests that spread during the Cenozoic). Our finding opens exciting perspectives for comparative studies of the origin, ecology and evolutionary history of this ant-plant mutualism. Copyright © Cambridge University Press 2016. |
| Address |
INRA, UMR, EcoFoG, Campus Agronomique, BP 316, Kourou Cedex, France |
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| Notes |
Export Date: 1 September 2016 |
Approved |
no |
| Call Number |
EcoFoG @ webmaster @ |
Serial |
691 |
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| Author |
Wernsdorfer, H.; Caron, H.; Gerber, S.; Cornu, G.; Rossi, V.; Mortier, F.; Gourlet-Fleury, S. |
| Title |
Relationships between demography and gene flow and their importance for the conservation of tree populations in tropical forests under selective felling regimes |
Type |
Journal Article |
| Year |
2011 |
Publication |
Conservation Genetics |
Abbreviated Journal |
Conserv. Genet. |
| Volume |
12 |
Issue |
1 |
Pages |
15-29 |
| Keywords |
Genetic diversity; Gene flow; Population dynamics; Simulation model; Conservation; Forest management |
| Abstract |
Determining how tropical tree populations subject to selective felling (logging) pressure may be conserved is a crucial issue for forest management and studying this issue requires a comprehensive understanding of the relationships between population demography and gene flow. We used a simulation model, SELVA, to study (1) the relative impact of demographic factors (juvenile mortality, felling regime) and genetic factors (selfing, number and location of fathers, mating success) on long-term genetic diversity; and (2) the impact of different felling regimes on population size versus genetic diversity. Impact was measured by means of model sensitivity analyses. Juvenile mortality had the highest impact on the number of alleles and genotypes, and on the genetic distance between the original and final populations. Selfing had the greatest impact on observed heterozygote frequency and fixation index. Other factors and interactions had only minor effects. Overall, felling had a greater impact on population size than on genetic diversity. Interestingly, populations under relatively low felling pressure even had a somewhat lower fixation index than undisturbed populations (no felling). We conclude that demographic processes such as juvenile mortality should be modelled thoroughly to obtain reliable long-term predictions of genetic diversity. Mortality in selfed and outcrossed progenies should be modelled explicitly by taking inbreeding depression into account. The modelling of selfing based on population rate appeared to be oversimplifying and should account for inter-tree variation. Forest management should pay particular attention to the regeneration capacities of felled species. |
| Address |
[Wernsdoerfer, Holger] Ctr INRA Nancy, INRA, Lab Etude Ressources Foret Bois LERFoB, UMR1092, F-54280 Champenoux, France, Email: holger.wernsdoerfer@cirad.fr |
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SPRINGER |
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Original Title |
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Abbreviated Series Title |
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Series Issue |
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Edition |
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| ISSN |
1566-0621 |
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| Notes |
ISI:000285971900002 |
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no |
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EcoFoG @ eric.marcon @ |
Serial |
289 |
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| Author |
Fichaux, M.; Béchade, B.; Donald, J.; Weyna, A.; Delabie, J.H.C.; Murienne, J.; Baraloto, C.; Orivel, J. |
| Title |
Habitats shape taxonomic and functional composition of Neotropical ant assemblages |
Type |
Journal Article |
| Year |
2019 |
Publication |
Oecologia |
Abbreviated Journal |
Oecologia |
| Volume |
189 |
Issue |
2 |
Pages |
501-513 |
| Keywords |
Formicidae; Functional diversity; Habitat filtering; Rainforest; Traits; Formicidae |
| Abstract |
Determining assembly rules of co-occurring species persists as a fundamental goal in community ecology. At local scales, the relative importance of environmental filtering vs. competitive exclusion remains a subject of debate. In this study, we assessed the relative importance of habitat filtering and competition in structuring understory ant communities in tropical forests of French Guiana. Leaf-litter ants were collected using pitfall and Winkler traps across swamp, slope and plateau forests near Saül, French Guiana. We used a combination of univariate and multivariate analyses to evaluate trait response of ants to habitat characteristics. Null model analyses were used to investigate the effects of habitat filtering and competitive interactions on community assembly at the scale of assemblages and sampling points, respectively. Swamp forests presented a much lower taxonomic and functional richness compared to slope and plateau forests. Furthermore, marked differences in taxonomic and functional composition were observed between swamp forests and slope or plateau forests. We found weak evidence for competitive exclusion based on null models. Nevertheless, the contrasting trait composition observed between habitats revealed differences in the ecological attributes of the species in the different forest habitats. Our analyses suggest that competitive interactions may not play an important role in structuring leaf-litter ant assemblages locally. Rather, habitats are responsible for driving both taxonomic and functional composition of ant communities. |
| Address |
International Center for Tropical Botany, Department of Biological Sciences, Florida International University, Miami, FL 33199, United States |
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| Publisher |
Springer Verlag |
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Edition |
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| ISSN |
00298549 (Issn) |
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no |
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EcoFoG @ webmaster @ |
Serial |
863 |
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| Author |
Csilléry, K.; Lalague, H.; Vendramin, G.G.; González-Martínez, S.C.; Fady, B.; Oddou-Muratorio, S. |
| Title |
Detecting short spatial scale local adaptation and epistatic selection in climate-related candidate genes in European beech (Fagus sylvatica) populations |
Type |
Journal Article |
| Year |
2014 |
Publication |
Molecular Ecology |
Abbreviated Journal |
Molecular Ecology |
| Volume |
23 |
Issue |
19 |
Pages |
4696-4708 |
| Keywords |
abiotic stress; budburst phenology; FST outlier; gene network; haplotype; Ohta's test; variance components of linkage disequilibrium |
| Abstract |
Detecting signatures of selection in tree populations threatened by climate change is currently a major research priority. Here, we investigated the signature of local adaptation over a short spatial scale using 96 European beech (Fagus sylvatica L.) individuals originating from two pairs of populations on the northern and southern slopes of Mont Ventoux (south-eastern France). We performed both single and multilocus analysis of selection based on 53 climate-related candidate genes containing 546 SNPs. FST outlier methods at the SNP level revealed a weak signal of selection, with three marginally significant outliers in the northern populations. At the gene level, considering haplotypes as alleles, two additional marginally significant outliers were detected, one on each slope. To account for the uncertainty of haplotype inference, we averaged the Bayes factors over many possible phase reconstructions. Epistatic selection offers a realistic multilocus model of selection in natural populations. Here, we used a test suggested by Ohta based on the decomposition of the variance of linkage disequilibrium. Overall populations, 0.23% of the SNP pairs (haplotypes) showed evidence of epistatic selection, with nearly 80% of them being within genes. One of the between gene epistatic selection signals arose between an FST outlier and a nonsynonymous mutation in a drought response gene. Additionally, we identified haplotypes containing selectively advantageous allele combinations which were unique to high or low elevations and northern or southern populations. Several haplotypes contained nonsynonymous mutations situated in genes with known functional importance for adaptation to climatic factors. |
| Address |
CIFOR-INIA, Forest Research Centre, Carretera de La Coruña km 7.5Madrid 28040, Spain |
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| Notes |
Export Date: 13 January 2015 |
Approved |
no |
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EcoFoG @ webmaster @ |
Serial |
579 |
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| Author |
Maggia, Marie-Eugénie ; Decaëns, Thibaud ; Lapied, Emmanuel ; Dupont, Lise ; Roy, Virginie ; Schimann, Heidy ; Orivel, Jérome ; Murienne, Jérôme ; Baraloto, Christophier ; Cottenie, Karl ; Steinke, Dirk |
| Title |
At each site its diversity: DNA barcoding reveals remarkable earthworm diversity in neotropical rainforests of French Guiana |
Type |
Journal Article |
| Year |
2021 |
Publication |
Applied Soil Ecology |
Abbreviated Journal |
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| Volume |
164 |
Issue |
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Pages |
103932 |
| Keywords |
DNA barcoding Tropical rainforest Community ecology Diversity level Sampling methods |
| Abstract |
Despite their recognized essential role in soil, earthworms in tropical environments are still understudied. The aim of this study was to re-evaluate the diversity at the regional scale, as well as to investigate the environmental and spatial drivers of earthworm communities. We sampled earthworm communities across a range of habitats at six localities in French Guiana using three different sampling methods. We generated 1675 DNA barcodes and combined them with data from a previous study. Together, all sequences clustered into 119 MOTUs which were used as proxy to assess species richness. Only two MOTUs were common between the six localities and 20.2% were singletons, showing very high regional species richness and a high number of rare species. A canonical redundancy analysis was used to identify key drivers of the earthworm community composition. The RDA results and beta-diversity calculations both show strong species turnover and a strong spatial effect, resulting from dispersal limitations that are responsible for the current community composition. Sampling in different microhabitats allowed the discovery of 23 MOTUs that are exclusively found in decaying trunks and epiphytes, highlighting hidden diversity of earthworms outside of soil. |
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Elsevier B.V. |
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0929-1393 |
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no |
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EcoFoG @ webmaster @ |
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1055 |
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