| Records |
| Author |
Dutech, C.; Maggia, L.; Tardy, C.; Joly, H.I.; Jarne, P. |
| Title |
Tracking a genetic signal of extinction-recolonization events in a neotropical tree species: Vouacapoua americana aublet in french guiana |
Type |
Journal Article |
| Year |
2003 |
Publication |
Evolution |
Abbreviated Journal |
Evolution |
| Volume |
57 |
Issue |
12 |
Pages |
2753-2764 |
| Keywords |
allelic richness; caesalpinioideae; chloroplast DNA; climatic changes; cytonuclear disequilibrium; legummosae; microsatellite loci; tropical rainforest |
Abstract  |
Drier periods from the late Pleistocene and early Holocene have been hypothesized to have caused the disappearance of various rainforest species over large geographical areas in South America and restricted the extant populations to mesic sites. Subsequent improvement in climatic conditions has been associated with recolonization. Changes in population size associated with these extinction-recolonization events should have affected genetic diversity within species. However, these historical hypotheses and their genetic consequences have rarely been tested in South America. Here, we examine the diversity of the chloroplast and nuclear genomes in a Neotropical rainforest tree species, Vouacapoua americana (Leguminosae, Caesalpinioideae) in French Guiana. The chloroplast diversity was analyzed using a polymerase chain reaction-restriction fragment length polymorphism method (six pairs of primers) in 29 populations distributed over most of French Guiana, and a subset of 17 populations was also analyzed at nine polymorphic microsatellite loci. To determine whether this species has experienced extinction-recolonization, we sampled populations in areas supposedly not or only slightly affected by climatic changes, where the populations would not have experienced frequent extinction, and in areas that appear to have been recently recolonized. In the putatively recolonized areas, we found patches of several thousands of hectares homogeneous for chloroplast variation that can be interpreted as the effect of recolonization processes from several geographical origins. In addition, we observed that, for both chloroplast and nuclear genomes, the populations in newly recolonized areas exhibited a significantly smaller allelic richness than others. Controlling for geographic distance, we also detected a significant correlation between chloroplast and nuclear population differentiation. This result indicates a cytonuclear disequilibrium that can be interpreted as a historical signal of a genetic divergence between fragmented populations. In conclusion, the spatial genetic structure of contemporary V. americana populations shows evidence that this species has experienced large extinction-recolonization events, which were possibly caused by past climatic change. |
| Address |
CIRAD Foret, Silvolab, Ecol Mol, F-97387 Kourou, France, Email: laruent.maggia@cirad.fr |
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SOC STUDY EVOLUTION |
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0014-3820 |
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ISI:000188061800007 |
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no |
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EcoFoG @ eric.marcon @ |
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241 |
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| Author |
Ménard, L.; McKey, D.; Mühlen, G.S.; Clair, B.; Rowe, N.P. |
| Title |
The Evolutionary Fate of Phenotypic Plasticity and Functional Traits under Domestication in Manioc: Changes in Stem Biomechanics and the Appearance of Stem Brittleness |
Type |
Journal Article |
| Year |
2013 |
Publication |
PLoS ONE |
Abbreviated Journal |
PLoS ONE |
| Volume |
8 |
Issue |
9 |
Pages |
e74727 |
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| Abstract |
Domestication can influence many functional traits in plants, from overall life-history and growth form to wood density and cell wall ultrastructure. Such changes can increase fitness of the domesticate in agricultural environments but may negatively affect survival in the wild. We studied effects of domestication on stem biomechanics in manioc by comparing domesticated and ancestral wild taxa from two different regions of greater Amazonia. We compared mechanical properties, tissue organisation and wood characteristics including microfibril angles in both wild and domesticated plants, each growing in two different habitats (forest or savannah) and varying in growth form (shrub or liana). Wild taxa grew as shrubs in open savannah but as lianas in overgrown and forested habitats. Growth form plasticity was retained in domesticated manioc. However, stems of the domesticate showed brittle failure. Wild plants differed in mechanical architecture between shrub and liana phenotypes, a difference that diminished between shrubs and lianas of the domesticate. Stems of wild plants were generally stiffer, failed at higher bending stresses and were less prone to brittle fracture compared with shrub and liana phenotypes of the domesticate. Biomechanical differences between stems of wild and domesticated plants were mainly due to changes in wood density and cellulose microfibril angle rather than changes in secondary growth or tissue geometry. Domestication did not significantly modify “large-scale” trait development or growth form plasticity, since both wild and domesticated manioc can develop as shrubs or lianas. However, “finer-scale” developmental traits crucial to mechanical stability and thus ecological success of the plant were significantly modified. This profoundly influenced the likelihood of brittle failure, particularly in long climbing stems, thereby also influencing the survival of the domesticate in natural situations vulnerable to mechanical perturbation. We discuss the different selective pressures that could explain evolutionary modifications of stem biomechanical properties under domestication in manioc. © 2013 Ménard et al. |
| Address |
CNRS, UMR Ecologie des Forêts de Guyane (EcoFoG), Campus Agronomique, Kourou, French Guiana |
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19326203 (Issn) |
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Export Date: 13 September 2013; Source: Scopus; Art. No.: e74727; Coden: Polnc; doi: 10.1371/journal.pone.0074727; Language of Original Document: English; Correspondence Address: Rowe, N. P.; Université Montpellier 2, UMR AMAP, Montpellier, France; email: nrowe@cirad.fr |
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no |
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EcoFoG @ webmaster @ |
Serial |
503 |
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| Author |
Zinger, L.; Chave, J.; Coissac, E.; Iribar, A.; Louisanna, E.; Manzi, S.; Schilling, V.; Schimann, H.; Sommeria-Klein, G.; Taberlet, P. |
| Title |
Extracellular DNA extraction is a fast, cheap and reliable alternative for multi-taxa surveys based on soil DNA |
Type |
Journal Article |
| Year |
2016 |
Publication |
Soil Biology and Biochemistry |
Abbreviated Journal |
Soil Biology and Biochemistry |
| Volume |
96 |
Issue |
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Pages |
16-19 |
| Keywords |
DNA extraction protocol; DNA metabarcoding; Multi-taxa biodiversity; Tropical forest |
| Abstract |
DNA metabarcoding on soil samples is increasingly used for large-scale and multi-taxa biodiversity studies. However, DNA extraction may be a major bottleneck for such wide uses. It should be cost/time effective and allow dealing with large sample volumes so as to maximise the representativeness of both micro- and macro-organisms diversity. Here, we compared the performances of a fast and cheap extracellular DNA extraction protocol with a total DNA extraction method in retrieving bacterial, eukaryotic and plant diversity from tropical soil samples of ca. 10 g. The total DNA extraction protocol yielded more high-quality DNA. Yet, the extracellular DNA protocol provided similar diversity assessments although it presented some differences in clades relative abundance and undersampling biases. We argue that extracellular DNA is a good compromise between cost, labor, and accuracy for high-throughput DNA metabarcoding studies of soil biodiversity. © 2016 Elsevier Ltd. |
| Address |
INRA UMR ECOFOG, Kourou, French Guiana |
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Export Date: 17 February 2016 |
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no |
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EcoFoG @ webmaster @ |
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663 |
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| Author |
Paine, C.E.T.; Harms, K.E.; Ramos, J. |
| Title |
Supplemental irrigation increases seedling performance and diversity in a tropical forest |
Type |
Journal Article |
| Year |
2009 |
Publication |
Journal of Tropical Ecology |
Abbreviated Journal |
J. Trop. Ecol. |
| Volume |
25 |
Issue |
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Pages |
171-180 |
| Keywords |
diversity; Estacion Biologica Los Amigos; habitat filtering; palms; Peru; precipitation; seasonality; seedling recruitment |
| Abstract |
Diversity is positively correlated with water availability at global, continental and regional scales. With the objective of better understanding the mechanisms that drive these relationships. we investigated the degree to which variation in water availability affects the performance (recruitment, growth a rid survival) of juvenile trees. Precipitation was supplemented throughout two dry seasons in a seasonal moist forest in south-eastern Peru. Supplementing precipitation by 160 mm mo(-1), we increased soil moisture by 17%. To generate seedling communities or known species composition, we sowed 3840 seeds of 12 species. We monitored the fates of the 554 seedlings recruited from the sown seeds. as well as 1856 older non-sown seedlings (10 cm <= height < 50 cm), and 2353 saplings (> 1 m tall). Watering significantly enhanced young seedling growth and survival, increasing stern density and diversity. Watering diminished the recruitment of species associated with upland forests, but increased the survival of both upland- and lowland-associated species. Though supplemental watering increased the growth of older seedlings. their density and diversity were unaffected. Sapling performance was insensitive to watering. We infer that variation in dry-season water availability may affect seedling community structure by differentially affecting recruitment and increasing overall survival. These results suggest that differential seedling recruitment and survival may contribute to the observed relationships between water availability, habitat associations and patterns of tree species richness. |
| Address |
[Paine, C. E. Timothy; Harms, Kyle E.] Louisiana State Univ, Dept Biol Sci, Baton Rouge, LA 70803 USA, Email: timothy.paine@ecofog.gf |
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CAMBRIDGE UNIV PRESS |
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0266-4674 |
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ISI:000264212400006 |
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no |
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EcoFoG @ eric.marcon @ |
Serial |
118 |
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Guitet, S.; Sabatier, D.; Brunaux, O.; Couteron, P.; Denis, T.; Freycon, V.; Gonzalez, S.; Hérault, B.; Jaouen, G.; Molino, J.-F.; Pélissier, R.; Richard-Hansen, C.; Vincent, G. |
| Title |
Disturbance Regimes Drive the Diversity of Regional Floristic Pools Across Guianan Rainforest Landscapes |
Type |
Journal Article |
| Year |
2018 |
Publication |
Scientific Reports |
Abbreviated Journal |
Sci. Rep. |
| Volume |
8 |
Issue |
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Pages |
3872 |
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| Abstract |
Disturbances control rainforest dynamics, and, according to the intermediate disturbance hypothesis (IDH), disturbance regime is a key driver of local diversity. Variations in disturbance regimes and their consequences on regional diversity at broad spatiotemporal scales are still poorly understood. Using multidisciplinary large-scale inventories and LiDAR acquisitions, we developed a robust indicator of disturbance regimes based on the frequency of a few early successional and widely distributed pioneer species. We demonstrate at the landscape scale that tree-species diversity and disturbance regimes vary with climate and relief. Significant relationships between the disturbance indicator, tree-species diversity and soil phosphorus content agree with the hypothesis that rainforest diversity is controlled both by disturbance regimes and long-term ecosystem stability. These effects explain the broad-scale patterns of floristic diversity observed between landscapes. In fact, species-rich forests in highlands, which have benefited from long-term stability combined with a moderate and regular regime of local disturbances, contrast with less diversified forests on recently shaped lowlands, which have undergone more recent changes and irregular dynamics. These results suggest that taking the current disturbance regime into account and including geomorphological stratifications in climate-vegetation models may be an effective way to improve the prediction of changes in species diversity under climate change. © 2018 The Author(s). |
| Address |
AgroParisTech, EcoFoG, Kourou, French Guiana |
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| Notes |
Export Date: 21 March 2018 |
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no |
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EcoFoG @ webmaster @ |
Serial |
798 |
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Hattenschwiler, S.; Aeschlimann, B.; Couteaux, M.M.; Roy, J.; Bonal, D. |
| Title |
High variation in foliage and leaf litter chemistry among 45 tree species of a neotropical rainforest community |
Type |
Journal Article |
| Year |
2008 |
Publication |
New Phytologist |
Abbreviated Journal |
New Phytol. |
| Volume |
179 |
Issue |
1 |
Pages |
165-175 |
| Keywords |
French Guiana; interspecific and intraspecific variation; leaf litter traits; neotropical rainforest; nitrogen; nutrient resorption; phosphorus; stoichiometry |
| Abstract |
Distinct ecosystem level carbon : nitrogen : phosphorus (C : N : P) stoichiometries in forest foliage have been suggested to reflect ecosystem-scale selection for physiological strategies in plant nutrient use. Here, this hypothesis was explored in a nutrient-poor lowland rainforest in French Guiana. Variation in C, N and P concentrations was evaluated in leaf litter and foliage from neighbour trees of 45 different species, and the litter concentrations of major C fractions were also measured. Litter C ranged from 45.3 to 52.4%, litter N varied threefold (0.68-2.01%), and litter P varied seven-fold (0.009-0.062%) among species. Compared with foliage, mean litter N and P concentrations decreased by 30% and 65%, respectively. Accordingly, the range in mass-based N : P shifted from 14 to 55 in foliage to 26 to 105 in litter. Resorption proficiencies indicated maximum P withdrawal in most species, but with a substantial increase in variation in litter P compared with foliage. These data suggest that constrained ecosystem-level C : N : P ratios do not preclude the evolution of highly diversified strategies of nutrient use and conservation among tropical rainforest tree species. The resulting large variation in litter quality will influence stoichiometric constraints within the decomposer food web, with potentially far-ranging consequences on nutrient dynamics and plant-soil feedbacks. |
| Address |
[Haettenschwiler, Stephan; Aeschlimann, Beat; Couteaux, Marie-Madeleine; Roy, Jacques] CEFE, CNRS, F-34293 Montpellier 5, France, Email: stephan.hattenschwiler@cefe.cnrs.fr |
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BLACKWELL PUBLISHING |
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0028-646X |
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ISI:000256412500017 |
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no |
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EcoFoG @ eric.marcon @ |
Serial |
139 |
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Morel-Journel, T.; Piponiot, C.; Vercken, E.; Mailleret, L. |
| Title |
Evidence for an optimal level of connectivity for establishment and colonization |
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Journal Article |
| Year |
2016 |
Publication |
Biology Letters |
Abbreviated Journal |
Biol Lett |
| Volume |
12 |
Issue |
11 |
Pages |
20160704 |
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| Abstract |
Dispersal is usually associated with the spread of invasive species, but it also has two opposing effects, one decreasing and the other increasing the probability of establishment. Indeed, dispersal both slows population growth at the site of introduction and increases the likelihood of surrounding habitat being colonized. The connectivity of the introduction site is likely to affect dispersal, and, thus, establishment, according to the dispersal behaviour of individuals. Using individual-based models and microcosm experiments on minute wasps, we demonstrated the existence of a hump-shaped relationship between connectivity and establishment in situations in which individual dispersal resembled a diffusion process. These results suggest that there is an optimal level of connectivity for the establishment of introduced populations locally at the site of introduction, and regionally over the whole landscape. |
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EcoFoG @ webmaster @ |
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722 |
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Bastias, C.C.; Fortunel, C.; Valladares, F.; Baraloto, C.; Benavides, R.; Cornwell, W.; Markesteijn, L.; De Oliveira, A.A.; Sansevero, J.B.B.; Vaz, M.C.; Kraft, N.J.B. |
| Title |
Intraspecific leaf trait variability along a boreal-to-tropical community diversity gradient |
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Journal Article |
| Year |
2017 |
Publication |
PLoS ONE |
Abbreviated Journal |
PLoS ONE |
| Volume |
12 |
Issue |
2 |
Pages |
e0172495 |
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| Abstract |
Disentangling the mechanisms that shape community assembly across diversity gradients is a central matter in ecology. While many studies have explored community assembly through species average trait values, there is a growing understanding that intraspecific trait variation (ITV) can also play a critical role in species coexistence. Classic biodiversity theory hypothesizes that higher diversity at species-rich sites can arise from narrower niches relative to species-poor sites, which would be reflected in reduced ITV as species richness increases. To explore how ITV in woody plant communities changes with species richness, we compiled leaf trait data (leaf size and specific leaf area) in a total of 521 woody plant species from 21 forest communities that differed dramatically in species richness, ranging from boreal to tropical rainforests. At each forest, we assessed ITV as an estimate of species niche breadth and we quantified the degree of trait overlap among co-occurring species as a measure of species functional similarity. We found ITV was relatively invariant across the species richness gradient. In addition, we found that species functional similarity increased with diversity. Contrary to the expectation from classic biodiversity theory, our results rather suggest that neutral processes or equalizing mechanisms can be acting as potential drivers shaping community assembly in hyperdiverse forests. © This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 public domain dedication. |
| Address |
Universidade Federal Rural do Rio de Janeiro-UFRRJ, Departamento de Ciencias Ambientais-DCA, Instituto de Florestas, Seropédica, Rio de Janeiro, Brazil |
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Export Date: 13 March 2017 |
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no |
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EcoFoG @ webmaster @ |
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744 |
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Fouquet, A.; Ledoux, J.-B.; Dubut, V.; Noonan, B.P.; Scotti, I. |
| Title |
The interplay of dispersal limitation, rivers, and historical events shapes the genetic structure of an Amazonian frog |
Type |
Journal Article |
| Year |
2012 |
Publication |
Biological Journal of the Linnean Society |
Abbreviated Journal |
Biol. J. Linn. Soc. |
| Volume |
106 |
Issue |
2 |
Pages |
356-373 |
| Keywords |
Amazonia; Amphibian; Gene flow; Microsatellites; Mitochondrial DNA; Spatial genetic structure |
| Abstract |
Disentangling the impact of landscape features such as rivers and historical events on dispersal is a challenging but necessary task to gain a comprehensive picture of the evolution of diverse biota such as that found in Amazonia. Adenomera andreae, a small, territorial, terrestrial frog species of the Amazonian forest represents a good model for such studies. We combined cytochromeb sequences with 12 microsatellites to investigate the genetic structure at two contrasted spatial scales in French Guiana: along a ∼6-km transect, to evaluate dispersal ability, and between paired bank populations along a ∼65-km stretch of the Approuague river, to test the effect of rivers as barriers to dispersal. We observed significant spatial genetic structure between individuals at a remarkably small geographical scale, and conclude that the species has a restricted dispersal ability that is probably tied to its life-history traits. Mitochondrial and microsatellite data also indicate a high level of differentiation among populations on opposite banks of the river, and, in some cases, among populations on the same riverbank. These results suggest that the observed population structure in A.andreae is the result of restricted dispersal abilities combined with the action of rivers and Quaternary population isolation. Given that Amazonia hosts a great portion of anurans, as well as other small vertebrates, that display life-history traits comparable with A.andreae, we argue that our analyses provide new insights into the complex interactions among evolutionary processes shaping Amazonian biodiversity. © 2012 The Linnean Society of London. |
| Address |
INRA, UMR ECOFOG, Campus agronomique, Avenue de France, BP 709, 97387 Kourou, French Guiana, France |
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00244066 (Issn) |
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Export Date: 2 May 2012; Source: Scopus; Coden: Bjlsb; doi: 10.1111/j.1095-8312.2012.01871.x; Language of Original Document: English; Correspondence Address: Fouquet, A.; Departamento de Zoologia, Instituto de Biociências, Universidade de São Paulo, Caixa Postal 11461, CEP 05422-970, São Paulo, Brazil; email: fouquet.antoine@gmail.com |
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EcoFoG @ webmaster @ |
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397 |
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Prevost-Boure, N.C.; Ngao, J.; Berveiller, D.; Bonal, D.; Damesin, C.; Dufrene, E.; Lata, J.C.; Le Dantec, V.; Longdoz, B.; Ponton, S.; Soudani, K.; Epron, D. |
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Root exclusion through trenching does not affect the isotopic composition of soil CO2 efflux |
Type |
Journal Article |
| Year |
2009 |
Publication |
Plant and Soil |
Abbreviated Journal |
Plant Soil |
| Volume |
319 |
Issue |
1-2 |
Pages |
1-13 |
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Stable carbon isotopes; Natural abundance; Soil respiration; Trenched plot; Rainforest; Temperate forest |
| Abstract |
Disentangling the autotrophic and heterotrophic components of soil CO2 efflux is critical to understanding the role of soil system in terrestrial carbon (C) cycling. In this study, we combined a stable C-isotope natural abundance approach with the trenched plot method to determine if root exclusion significantly affected the isotopic composition (delta C-13) of soil CO2 efflux (R-S). This study was performed in different forest ecosystems: a tropical rainforest and two temperate broadleaved forests, where trenched plots had previously been installed. At each site, R-S and its delta C-13 (delta C-13(Rs)) tended to be lower in trenched plots than in control plots. Contrary to R-S, delta C-13(Rs) differences were not significant. This observation is consistent with the small differences in delta C-13 measured on organic matter from root, litter and soil. The lack of an effect on delta C-13(Rs) by root exclusion could be from the small difference in delta C-13 between autotrophic and heterotrophic soil respirations, but further investigations are needed because of potential artefacts associated with the root exclusion technique. |
| Address |
[Prevost-Boure, Nicolas Chemidlin; Berveiller, Daniel; Damesin, Claire; Dufrene, Eric; Lata, Jean-Christophe; Soudani, Kamel] Univ Paris Sud, Lab Ecol Systemat & Evolut, AgroParisTech, CNRS,UMR 8079, F-75231 Paris, France, Email: nicolas.chemidlin-prevost-boure@u-psud.fr |
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SPRINGER |
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0032-079X |
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ISI:000266143400001 |
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no |
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EcoFoG @ eric.marcon @ |
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203 |
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