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Pastorello, G., Trotta, C., Canfora, E., Chu, H., Christianson, D., Cheah, Y. - W., et al. (2020). The FLUXNET2015 dataset and the ONEFlux processing pipeline for eddy covariance data. Sci Data, 7(1), 225.
Abstract: The FLUXNET2015 dataset provides ecosystem-scale data on CO2, water, and energy exchange between the biosphere and the atmosphere, and other meteorological and biological measurements, from 212 sites around the globe (over 1500 site-years, up to and including year 2014). These sites, independently managed and operated, voluntarily contributed their data to create global datasets. Data were quality controlled and processed using uniform methods, to improve consistency and intercomparability across sites. The dataset is already being used in a number of applications, including ecophysiology studies, remote sensing studies, and development of ecosystem and Earth system models. FLUXNET2015 includes derived-data products, such as gap-filled time series, ecosystem respiration and photosynthetic uptake estimates, estimation of uncertainties, and metadata about the measurements, presented for the first time in this paper. In addition, 206 of these sites are for the first time distributed under a Creative Commons (CC-BY 4.0) license. This paper details this enhanced dataset and the processing methods, now made available as open-source codes, making the dataset more accessible, transparent, and reproducible.
Keywords: article; breathing; ecophysiology; ecosystem; Eddy covariance; licence; metadata; photosynthesis; pipeline; remote sensing; time series analysis; uncertainty
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Barabe, D., Lacroix, C., & Gibernau, M. (2012). Developmental floral morphology of Syngonium in the context of the tribe Caladieae (Araceae). Willdenowia – Annals of the Botanic Garden and Botanical Museum Berlin-Dahlem, 42(2), 297–305.
Abstract: The floral development of Syngonium angustatum is analysed in the context of a recently published molecular phylogeny of the Araceae. The initiation of discoid floral primordia occurs acropetally on the surface of the inflorescence. Female flowers, atypical bisexual flowers, sterile male flowers and male flowers are inserted on the same phyllotactic spirals on the spadix. Stamen primordia are initiated simultaneously on the periphery of more or less circular floral primordia. There are four stamens per flower (rarely three). In a synandrium, the fusion of stamens occurs very early during their developmental cycle. In some flowers one or two stamens remain free. The staminodes are also initiated on the periphery of the discoid floral primordium and their number varies from four to six. The growth of the fused staminodes will eventually form a longitudinal cavity in the centre of the mature synandrode. On the synandrodes located near the female zone, one or two staminodes remain free during development. No atypical bisexual flowers were observed on the inflorescence of Syngonium. The presence of a few calcium oxalate crystals was observed on the surface of all types of flowers. All the atypical flowers located at the base of the sterile zone corresponded to sterile male flowers and resulted from a more or less random disorganisation of the typical structure of a synandrode. In the Aroideae, free stamens or staminodes represent a plesiomorphic condition. The association of synandria and synandrodes is present in all early diverging genera of the tribe Caladieae and could represent the ancestral state. It is not clear if free stamens have evolved once or twice in the tribe Caladieae, both scenarios are possible.
Keywords: Aroids; Inflorescence; Phylogeny; Oxalate Crystals; Flower
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Wagner, F., Rossi, V., Stahl, C., Bonal, D., & Herault, B. (2013). Asynchronism in leaf and wood production in tropical forests: A study combining satellite and ground-based measurements. Biogeosciences, 10(11), 7307–7321.
Abstract: The fixation of carbon in tropical forests mainly occurs through the production of wood and leaves, both being the principal components of net primary production. Currently field and satellite observations are independently used to describe the forest carbon cycle, but the link between satellite-derived forest phenology and field-derived forest productivity remains opaque. We used a unique combination of a MODIS enhanced vegetation index (EVI) dataset, a wood production model based on climate data and direct litterfall observations at an intra-annual timescale in order to question the synchronism of leaf and wood production in tropical forests. Even though leaf and wood biomass fluxes had the same range (respectively 2.4 ± 1.4 and 2.2 ± 0.4 Mg C ha-1 yr-1), they occurred separately in time. EVI increased with leaf renewal at the beginning of the dry season, when solar irradiance was at its maximum. At this time, wood production stopped. At the onset of the rainy season, when new leaves were fully mature and water available again, wood production quickly increased to reach its maximum in less than a month, reflecting a change in carbon allocation from short-lived pools (leaves) to long-lived pools (wood). The time lag between peaks of EVI and wood production (109 days) revealed a substantial decoupling between the leaf renewal assumed to be driven by irradiance and the water-driven wood production. Our work is a first attempt to link EVI data, wood production and leaf phenology at a seasonal timescale in a tropical evergreen rainforest and pave the way to develop more sophisticated global carbon cycle models in tropical forests. © 2013 Author(s).
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Pickett, K. M., Carpenter, J. M., & Dejean, A. (2009). “Basal” but not primitive: the nest of Apoica arborea de Saussure, 1854 (Insecta, Hymenoptera, Vespidae, Polistinae). Zoosystema, 31(4), 945–948.
Abstract: The first nest of Apoica arborea ever collected is reported. Characteristics of the unusual nest design are discussed relative to other members of the genus Apoica and other epiponine genera. The characteristics of its nest architecture are a mosaic of primitive and derived features for the Polistinae, and thus the nest design is not properly interpreted as the primitive condition from which other swarm-founding wasp nest designs are derived. The frequent conflation of “basal” and primitive is discussed.
Keywords: Insecta; Hymenoptera; Vespidae; Polistinae; Apoica; social wasps; nest architecture; mosaic evolution
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Dejean, A., Céréghino, R., Leponce, M., Rossi, V., Roux, O., Compin, A., et al. (2015). The fire ant Solenopsis saevissima and habitat disturbance alter ant communities. Biological Conservation, 187, 145–153.
Abstract: The fire ant Solenopsis saevissima is a major pest frequent in human-disturbed areas of its native range where it forms 'supercolonies'. We determined that its natural habitat in French Guiana is likely the sporadically flooded riparian forest and aimed to evaluate this ant's impact on the abundance and diversity of other ants by comparing different habitats at two sites. We noted a significant decrease in ant species richness between the rainforest and human-disturbed habitats (but not between the former and the naturally disturbed riparian forest), and between extreme habitats and all others. The number of ant nests per surface unit (i.e., quadrats of equal surface area), a proxy of ant abundance, globally followed this pattern. S. saevissima was absent from pristine rainforest (as expected) and from extreme habitats, showing the limits of its adaptability, whereas some other native ants can develop in these habitats. Ant species richness was significantly lower in the presence of S. saevissima in the riparian forest, forest edges and meadows, illustrating that this ant species has a negative impact on the ant communities in addition to the impact of natural- and man-made disturbances. Only some ant species can develop in its presence, and certain of these can even thrive. Because it has been recorded in Africa, Guadeloupe and the Galápagos Islands, we concluded that, due to the increasing volume of global trade and forest destruction, S. saevissima could become a pantropical invasive species. © 2015 Elsevier Ltd.
Keywords: Ant community; Fire ants; Invasive species; Species coexistence; Supercoloniality
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Christensen-Dalsgaard, K. K., Ennos, A. R., & Fournier, M. (2008). Interrelations between hydraulic and mechanical stress adaptations in woody plants. Plant. Signal. Behav., 3(7), 463–465.
Abstract: The fields of plant water relations and plant biomechanics have traditionally been studied separately even though often the same tissues are responsible for water transport and mechanical support. There is now increasing evidence that hydraulic and mechanical adaptations may influence one another. We studied the changes in the hydraulic and mechanical properties of the wood along lateral roots of two species of buttressed trees. In these roots, the mechanical contstraints quantified by strain measurements are known to decrease distally. Further, we investigated the effect of mechanical loading on the vessel anatomy in these and four other species of tropical trees. We found that as the strain decreased, the wood became progressively less stiff and strong but the conductivity increased exponentially. This was reflected in that adaptations towards re-enforcing mechanically loaded areas resulted in xylem with fewer and smaller vessels. In addition a controlled growth experiment on three tree species showed that drought adaptation may results in plants with stronger and stiffer tissue. Our results indicate that hydraulic and mechanical stress adaptations may be interrelated, and so support recent studied suggesting that physiological responses are complex balances rather than pure optimisations. ©2008 Landes Bioscience.
Keywords: Conductivity; Modulus of elasticity; Strain; Tree ecophysiology; Tropical trees; Wood anatomy; Yield stress
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Hardy, O. J., Maggia, L., Bandou, E., Breyne, P., Caron, H., Chevallier, M. H., et al. (2006). Fine-scale genetic structure and gene dispersal inferences in 10 Neotropical tree species. Mol. Ecol., 15(2), 559–571.
Abstract: The extent of gene dispersal is a fundamental factor of the population and evolutionary dynamics of tropical tree species, but directly monitoring seed and pollen movement is a difficult task. However, indirect estimates of historical gene dispersal can be obtained from the fine-scale spatial genetic structure of populations at drift-dispersal equilibrium. Using an approach that is based on the slope of the regression of pairwise kinship coefficients on spatial distance and estimates of the effective population density, we compare indirect gene dispersal estimates of sympatric populations of 10 tropical tree species. We re-analysed 26 data sets consisting of mapped allozyme, SSR (simple sequence repeat), RAPD (random amplified polymorphic DNA) or AFLP (amplified fragment length polymorphism) genotypes from two rainforest sites in French Guiana. Gene dispersal estimates were obtained for at least one marker in each species, although the estimation procedure failed under insufficient marker polymorphism, limited sample size, or inappropriate sampling area. Estimates generally suffered low precision and were affected by assumptions regarding the effective population density. Averaging estimates over data sets, the extent of gene dispersal ranged from 150 m to 1200 m according to species. Smaller gene dispersal estimates were obtained in species with heavy diaspores, which are presumably not well dispersed, and in populations with high local adult density. We suggest that limited seed dispersal could indirectly limit effective pollen dispersal by creating higher local tree densities, thereby increasing the positive correlation between pollen and seed dispersal distances. We discuss the potential and limitations of our indirect estimation procedure and suggest guidelines for future studies.
Keywords: French Guiana; gene dispersal; seed dispersal; spatial genetic structure; tropical trees
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Blanc, L., Echard, M., Herault, B., Bonal, D., Marcon, E., Chave, J., et al. (2009). Dynamics of aboveground carbon stocks in a selectively logged tropical forest. Ecol. Appl., 19(6), 1397–1404.
Abstract: The expansion of selective logging in tropical forests may be an important source of global carbon emissions. However, the effects of logging practices on the carbon cycle have never been quantified over long periods of time. We followed the fate of more than 60 000 tropical trees over 23 years to assess changes in aboveground carbon stocks in 48 1.56-ha plots in French Guiana that represent a gradient of timber harvest intensities, with and without intensive timber stand improvement (TSI) treatments to stimulate timber tree growth. Conventional selective logging led to emissions equivalent to more than a third of aboveground carbon stocks in plots without TSI (85 Mg C/ha), while plots with TSI lost more than one-half of aboveground carbon stocks (142 Mg C/ha). Within 20 years of logging, plots without TSI sequestered aboveground carbon equivalent to more than 80% of aboveground carbon lost to logging (-70.7 Mg C/ha), and our simulations predicted an equilibrium aboveground carbon balance within 45 years of logging. In contrast, plots with intensive TSI are predicted to require more than 100 years to sequester aboveground carbon lost to emissions. These results indicate that in some tropical forests aboveground carbon storage can be recovered within half a century after conventional logging at moderate harvest intensities.
Keywords: aboveground biomass; carbon sequestration; deforestation; French Guiana; global change; timber stand improvement; tropical forests
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Molina, L., Broquet, G., Imbach, P., Chevallier, F., Poulter, B., Bonal, D., et al. (2015). On the ability of a global atmospheric inversion to constrain variations of CO2 fluxes over Amazonia. Atmospheric Chemistry and Physics, 15(14), 8423–8438.
Abstract: The exchanges of carbon, water and energy between the atmosphere and the Amazon basin have global implications for the current and future climate. Here, the global atmospheric inversion system of the Monitoring of Atmospheric Composition and Climate (MACC) service is used to study the seasonal and interannual variations of biogenic CO<inf>2</inf> fluxes in Amazonia during the period 2002-2010. The system assimilated surface measurements of atmospheric CO<inf>2</inf> mole fractions made at more than 100 sites over the globe into an atmospheric transport model. The present study adds measurements from four surface stations located in tropical South America, a region poorly covered by CO<inf>2</inf> observations. The estimates of net ecosystem exchange (NEE) optimized by the inversion are compared to an independent estimate of NEE upscaled from eddy-covariance flux measurements in Amazonia. They are also qualitatively evaluated against reports on the seasonal and interannual variations of the land sink in South America from the scientific literature. We attempt at assessing the impact on NEE of the strong droughts in 2005 and 2010 (due to severe and longer-than-usual dry seasons) and the extreme rainfall conditions registered in 2009. The spatial variations of the seasonal and interannual variability of optimized NEE are also investigated. While the inversion supports the assumption of strong spatial heterogeneity of these variations, the results reveal critical limitations of the coarse-resolution transport model, the surface observation network in South America during the recent years and the present knowledge of modelling uncertainties in South America that prevent our inversion from capturing the seasonal patterns of fluxes across Amazonia. However, some patterns from the inversion seem consistent with the anomaly of moisture conditions in 2009. © Author(s) 2015.
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Baraloto, C., Marcon, E., Morneau, F., Pavoine, S., & Roggy, J. C. (2010). Integrating functional diversity into tropical forest plantation designs to study ecosystem processes. Ann. For. Sci., 67(3), 303.
Abstract: The elucidation of relationships between biodiversity and ecosystem processes has been limited by the definition of metrics of biodiversity and their integration into experimental design. Functional trait screening can strengthen the performance of these designs. We suggest the use of Rao's quadratic entropy to measure both functional diversity and phylogenetic diversity of species mixtures proposed for an experimental design, and demonstrate how they can provide complementary information. We also present an index assessing the statistical performance of these independent variables in different experimental designs. Measurement of independent variables as continuous vs. discrete variables reduces statistical performance, but improves the model by quantifying species differences masked by group assignments. To illustrate these advances, we present an example from a tropical forest tree community in which we screened 38 species for nine functional traits. The proposed TropiDEP design is based on the relative orthogonality of two multivariate trait axes defined using principal component analysis. We propose that independent variables describing functional diversity might be grouped to calculate independent variables describing suites of different traits with potentially different effects on particular ecosystem processes. In other systems these axes may differ from those reported here, yet the methods of analysis integrating functional and phylogenetic diversity into experimental design could be universal.
Keywords: complementarity; ecosystem function; functional groups; leaf economics spectrum; nitrogen fixation; quadratic entropy
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