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Vedel, V.; Rheims, C.; Murienne, J.; Brescovit, A.D. |
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Title |
Biodiversity baseline of the French Guiana spider fauna |
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Journal Article |
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2013 |
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SpringerPlus |
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SpringerPlus |
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2 |
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1 |
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1-19 |
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Arachnids; Araneae; Bio monitoring; French Guiana; Neotropics; Species richness |
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The need for an updated list of spiders found in French Guiana rose recently due to many upcoming studies planned. In this paper, we list spiders from French Guiana from existing literature (with corrected nomenclature when necessary) and from 2142 spiders sampled in 12 sites for this baseline study. Three hundred and sixty four validated species names of spider were found in the literature and previous authors' works. Additional sampling, conducted for this study added another 89 identified species and 62 other species with only a genus name for now. The total species of spiders sampled in French Guiana is currently 515. Many other Morphospecies were found but not described as species yet. An accumulation curve was drawn with seven of the sampling sites and shows no plateau yet. Therefore, the number of species inhabiting French Guiana cannot yet be determined. As the very large number of singletons found in the collected materials suggests, the accumulation curve indicates nevertheless that more sampling is necessary to discover the many unknown spider species living in French Guiana, with a focus on specific periods (dry season and wet season) and on specific and poorly studied habitats such as canopy, inselberg and cambrouze (local bamboo monospecific forest). © 2013 Vedel et al. |
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CNRS, EFA, UMR 5174 EDB (Laboratoire Evolution et Diversité Biologique), Université Paul Sabatier, 118 route de Narbonne, F-31062 Toulouse, France |
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21931801 (Issn) |
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Export Date: 25 November 2013; Source: Scopus; doi: 10.1186/2193-1801-2-361; Language of Original Document: English; Correspondence Address: Vedel, V.; Laboratoire d'entomologie Entobios, 5 Bis rue François Thomas, 97310 Kourou, Guyane Française, France; email: vincent.vedel@ecofog.gf |
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EcoFoG @ webmaster @ |
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510 |
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Perrot, T.; Guillaume, S.; Nadine, A.; Jacques, B.; Philippe, G.; Stéphane, D.; Rodnay, S.; Mélanie, M.-R.; Eric, G. |
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Title |
A reverse chemical ecology approach to explore wood natural durability |
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Journal Article |
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2020 |
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Microbial Biotechnology |
Abbreviated Journal |
Microb. Biotechnol. |
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13 |
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5 |
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1673-1677 |
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glutathione transferase; Article; biodegradation; data base; detoxification; ecology; enzyme activity; enzyme metabolism; forest; molecular dynamics; physical parameters; species identification; thermal analysis; Trametes versicolor; wood; wood durability |
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The natural durability of wood species, defined as their inherent resistance to wood-destroying agents, is a complex phenomenon depending on many biotic and abiotic factors. Besides the presence of recalcitrant polymers, the presence of compounds with antimicrobial properties is known to be important to explain wood durability. Based on the advancement in our understanding of fungal detoxification systems, a reverse chemical ecology approach was proposed to explore wood natural durability using fungal glutathione transferases. A set of six glutathione transferases from the white-rot Trametes versicolor were used as targets to test wood extracts from seventeen French Guiana neotropical species. Fluorescent thermal shift assays quantified interactions between fungal glutathione transferases and these extracts. From these data, a model combining this approach and wood density significantly predicts the wood natural durability of the species tested previously using long-term soil bed tests. Overall, our findings confirm that detoxification systems could be used to explore the chemical environment encountered by wood-decaying fungi and also wood natural durability. © 2020 The Authors. Microbial Biotechnology published by John Wiley & Sons Ltd and Society for Applied Microbiology. |
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Université de Lorraine, INRAE, LERMAB, Nancy, France |
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John Wiley and Sons Ltd |
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17517907 (Issn) |
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EcoFoG @ webmaster @ |
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955 |
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Perrot, T.; Schwartz, M.; Saiag, F.; Salzet, G.; Dumarçay, S.; Favier, F.; Gérardin, P.; Girardet, J.-M.; Sormani, R.; Morel-Rouhier, M.; Amusant, N.; Didierjean, C.; Gelhaye, E. |
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Fungal Glutathione Transferases as Tools to Explore the Chemical Diversity of Amazonian Wood Extractives |
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Journal Article |
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2018 |
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ACS Sustainable Chem. Eng. |
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ACS Sustainable Chemistry & Engineering |
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6 |
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10 |
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13078-13085 |
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The natural durability of wood is linked to its chemical composition and in particular the presence of metabolites called extractives that often possess chemical reactivity. For dealing with these compounds, wood degraders have developed detoxification systems usually involving enzyme families. Among these enzymes, glutathione transferases (GSTs) are involved in the decrease of the reactivity of toxic compounds. In this study, the hypothesis that the detoxification systems of wood decaying fungi could be indicators of the chemical reactivity of wood extracts has been tested. This approach has been evaluated using 32 wood extracts coming from French Guiana species, testing their antimicrobial ability, antioxidative properties, and reactivity against six GSTs from the white rot Trametes versicolor. From the obtained data, a significant correlation between the antimicrobial and antioxidative properties of the tested wood extracts and GST interactions was established. In addition, the chemical analysis performed on one of the most reactive extracts (an acetonic extract of Bagassa guianensis) has demonstrated oxyresveratrol as a major constituent. We were able to cocrystallize one GST with this commercially interesting compound. Taken together, the presented data support the hypothesis that detoxifying enzymes could be used to identify the presence of molecules of industrial interest in wood extracts. |
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American Chemical Society |
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doi: 10.1021/acssuschemeng.8b02636 |
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EcoFoG @ webmaster @ |
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854 |
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Talaga, S.; Leroy, C.; Guidez, A.; Dusfour, I.; Girod, R.; Dejean, A.; Murienne, J. |
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DNA reference libraries of French Guianese mosquitoes for barcoding and metabarcoding |
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Journal Article |
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2017 |
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PLoS ONE |
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PLoS ONE |
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12 |
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6 |
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e0176993 |
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The mosquito family (Diptera: Culicidae) constitutes the most medically important group of arthropods because certain species are vectors of human pathogens. In some parts of the world, the diversity is so high that the accurate delimitation and/or identification of species is challenging. A DNA-based identification system for all animals has been proposed, the socalled DNA barcoding approach. In this study, our objectives were (i) to establish DNA barcode libraries for the mosquitoes of French Guiana based on the COI and the 16S markers, (ii) to compare distance-based and tree-based methods of species delimitation to traditional taxonomy, and (iii) to evaluate the accuracy of each marker in identifying specimens. A total of 266 specimens belonging to 75 morphologically identified species or morphospecies were analyzed allowing us to delimit 86 DNA clusters with only 21 of them already present in the BOLD database. We thus provide a substantial contribution to the global mosquito barcoding initiative. Our results confirm that DNA barcodes can be successfully used to delimit and identify mosquito species with only a few cases where the marker could not distinguish closely related species. Our results also validate the presence of new species identified based on morphology, plus potential cases of cryptic species. We found that both COI and 16S markers performed very well, with successful identifications at the species level of up to 98% for COI and 97% for 16S when compared to traditional taxonomy. This shows great potential for the use of metabarcoding for vector monitoring and eco-epidemiological studies. © 2017 Talaga et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
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UMR EDB, CNRS, ENFA, Université de Toulouse Paul Sabatier, Toulouse, France |
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Export Date: 22 June 2017 |
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EcoFoG @ webmaster @ |
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757 |
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Chang, S.S.; Clair, B.; Ruelle, J.; Beauchene, J.; Di Renzo, F.; Quignard, F.; Zhao, G.J.; Yamamoto, H.; Gril, J. |
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Mesoporosity as a new parameter for understanding tension stress generation in trees |
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2009 |
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Journal of Experimental Botany |
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J. Exp. Bot. |
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60 |
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11 |
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3023-3030 |
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Growth stress; hydrogel; mesoporosity; tension wood |
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The mechanism for tree orientation in angiosperms is based on the production of high tensile stress on the upper side of the inclined axis. In many species, the stress level is strongly related to the presence of a peculiar layer, called the G-layer, in the fibre cell wall. The structure of the G-layer has recently been described as a hydrogel thanks to N-2 adsorption-desorption isotherms of supercritically dried samples showing a high mesoporosity (pores size from 2-50 nm). This led us to revisit the concept of the G-layer that had been, until now, only described from anatomical observation. Adsorption isotherms of both normal wood and tension wood have been measured on six tropical species. Measurements show that mesoporosity is high in tension wood with a typical thick G-layer while it is much less with a thinner G-layer, sometimes no more than normal wood. The mesoporosity of tension wood species without a G-layer is as low as in normal wood. Not depending on the amount of pores, the pore size distribution is always centred around 6-12 nm. These results suggest that, among species producing fibres with a G-layer, large structural differences of the G-layer exist between species. |
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[Chang, Shan-Shan; Clair, Bruno; Gril, Joseph] Univ Montpellier 2, LMGC, CNRS, F-34095 Montpellier 5, France, Email: clair@lmgc.univ-montp2.fr |
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OXFORD UNIV PRESS |
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0022-0957 |
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ISI:000268588300008 |
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EcoFoG @ eric.marcon @ |
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107 |
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Levis, C.; Costa, F.R.C.; Bongers, F.; Peña-Claros, M.; Clement, C.R.; Junqueira, A.B.; Neves, E.G.; Tamanaha, E.K.; Figueiredo, F.O.G.; Salomão, R.P.; Castilho, C.V.; Magnusson, W.E.; Phillips, O.L.; Guevara, J.E.; Sabatier, D.; Molino, J.-F.; López, D.C.; Mendoza, A.M.; Pitman, N.C.A.; Duque, A.; Vargas, P.N.; Zartman, C.E.; Vasquez, R.; Andrade, A.; Camargo, J.L.; Feldpausch, T.R.; Laurance, S.G.W.; Laurance, W.F.; Killeen, T.J.; Nascimento, H.E.M.; Montero, J.C.; Mostacedo, B.; Amaral, I.L.; Guimarães Vieira, I.C.; Brienen, R.; Castellanos, H.; Terborgh, J.; Carim, M. de J.V.; Guimarães, J.R. da S.; Coelho, L. de S.; Matos, F.D. de A.; Wittmann, F.; Mogollón, H.F.; Damasco, G.; Dávila, N.; García-Villacorta, R.; Coronado, E.N.H.; Emilio, T.; Filho, D. de A.L.; Schietti, J.; Souza, P.; Targhetta, N.; Comiskey, J.A.; Marimon, B.S.; Marimon, B.-H.; Neill, D.; Alonso, A.; Arroyo, L.; Carvalho, F.A.; de Souza, F.C.; Dallmeier, F.; Pansonato, M.P.; Duivenvoorden, J.F.; Fine, P.V.A.; Stevenson, P.R.; Araujo-Murakami, A.; Aymard C., G.A.; Baraloto, C.; do Amaral, D.D.; Engel, J.; Henkel, T.W.; Maas, P.; Petronelli, P.; Revilla, J.D.C.; Stropp, J.; Daly, D.; Gribel, R.; Paredes, M.R.; Silveira, M.; Thomas-Caesar, R.; Baker, T.R.; da Silva, N.F.; Ferreira, L.V.; Peres, C.A.; Silman, M.R.; Cerón, C.; Valverde, F.C.; Di Fiore, A.; Jimenez, E.M.; Mora, M.C.P.; Toledo, M.; Barbosa, E.M.; Bonates, L.C. de M.; Arboleda, N.C.; Farias, E. de S.; Fuentes, A.; Guillaumet, J.-L.; Jørgensen, P.M.; Malhi, Y.; de Andrade Miranda, I.P.; Phillips, J.F.; Prieto, A.; Rudas, A.; Ruschel, A.R.; Silva, N.; von Hildebrand, P.; Vos, V.A.; Zent, E.L.; Zent, S.; Cintra, B.B.L.; Nascimento, M.T.; Oliveira, A.A.; Ramirez-Angulo, H.; Ramos, J.F.; Rivas, G.; Schöngart, J.; Sierra, R.; Tirado, M.; van der Heijden, G.; Torre, E.V.; Wang, O.; Young, K.R.; Baider, C.; Cano, A.; Farfan-Rios, W.; Ferreira, C.; Hoffman, B.; Mendoza, C.; Mesones, I.; Torres-Lezama, A.; Medina, M.N.U.; van Andel, T.R.; Villarroel, D.; Zagt, R.; Alexiades, M.N.; Balslev, H.; Garcia-Cabrera, K.; Gonzales, T.; Hernandez, L.; Huamantupa-Chuquimaco, I.; Manzatto, A.G.; Milliken, W.; Cuenca, W.P.; Pansini, S.; Pauletto, D.; Arevalo, F.R.; Reis, N.F.C.; Sampaio, A.F.; Giraldo, L.E.U.; Sandoval, E.H.V.; Gamarra, L.V.; Vela, C.I.A.; ter Steege, H. |
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Title |
Persistent effects of pre-Columbian plant domestication on Amazonian forest composition |
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Journal Article |
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2017 |
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Science |
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355 |
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6328 |
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925-931 |
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The marks of prehistoric human societies on tropical forests can still be detected today. Levis et al. performed a basin-wide comparison of plant distributions, archaeological sites, and environmental data. Plants domesticated by pre-Columbian peoples are much more likely to be dominant in Amazonian forests than other species. Furthermore, forests close to archaeological sites often have a higher abundance and richness of domesticated species. Thus, modern-day Amazonian tree communities across the basin remain largely structured by historical human use.Science, this issue p. 925The extent to which pre-Columbian societies altered Amazonian landscapes is hotly debated. We performed a basin-wide analysis of pre-Columbian impacts on Amazonian forests by overlaying known archaeological sites in Amazonia with the distributions and abundances of 85 woody species domesticated by pre-Columbian peoples. Domesticated species are five times more likely than nondomesticated species to be hyperdominant. Across the basin, the relative abundance and richness of domesticated species increase in forests on and around archaeological sites. In southwestern and eastern Amazonia, distance to archaeological sites strongly influences the relative abundance and richness of domesticated species. Our analyses indicate that modern tree communities in Amazonia are structured to an important extent by a long history of plant domestication by Amazonian peoples. |
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EcoFoG @ webmaster @ |
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739 |
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Thomas, H.J.D.; Bjorkman, A.D.; Myers-Smith, I.H.; Elmendorf, S.C.; Kattge, J.; Diaz, S.; Vellend, M.; Blok, D.; Cornelissen, J.H.C.; Forbes, B.C.; Henry, G.H.R.; Hollister, R.D.; Normand, S.; Prevéy, J.S.; Rixen, C.; Schaepman-Strub, G.; Wilmking, M.; Wipf, S.; Cornwell, W.K.; Beck, P.S.A.; Georges, D.; Goetz, S.J.; Guay, K.C.; Rüger, N.; Soudzilovskaia, N.A.; Spasojevic, M.J.; Alatalo, J.M.; Alexander, H.D.; Anadon-Rosell, A.; Angers-Blondin, S.; te Beest, M.; Berner, L.T.; Björk, R.G.; Buchwal, A.; Buras, A.; Carbognani, M.; Christie, K.S.; Collier, L.S.; Cooper, E.J.; Elberling, B.; Eskelinen, A.; Frei, E.R.; Grau, O.; Grogan, P.; Hallinger, M.; Heijmans, M.M.P.D.; Hermanutz, L.; Hudson, J.M.G.; Johnstone, J.F.; Hülber, K.; Iturrate-Garcia, M.; Iversen, C.M.; Jaroszynska, F.; Kaarlejarvi, E.; Kulonen, A.; Lamarque, L.J.; Lantz, T.C.; Lévesque, E.; Little, C.J.; Michelsen, A.; Milbau, A.; Nabe-Nielsen, J.; Nielsen, S.S.; Ninot, J.M.; Oberbauer, S.F.; Olofsson, J.; Onipchenko, V.G.; Petraglia, A.; Rumpf, S.B.; Shetti, R.; Speed, J.D.M.; Suding, K.N.; Tape, K.D.; Tomaselli, M.; Trant, A.J.; Treier, U.A.; Tremblay, M.; Venn, S.E.; Vowles, T.; Weijers, S.; Wookey, P.A.; Zamin, T.J.; Bahn, M.; Blonder, B.; van Bodegom, P.M.; Bond-Lamberty, B.; Campetella, G.; Cerabolini, B.E.L.; Chapin, F.S., III; Craine, J.M.; Dainese, M.; Green, W.A.; Jansen, S.; Kleyer, M.; Manning, P.; Niinemets, Ü.; Onoda, Y.; Ozinga, W.A.; Peñuelas, J.; Poschlod, P.; Reich, P.B.; Sandel, B.; Schamp, B.S.; Sheremetiev, S.N.; de Vries, F.T. |
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Global plant trait relationships extend to the climatic extremes of the tundra biome |
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Journal Article |
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2020 |
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Nature Communications |
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Nat. Commun. |
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11 |
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1351 |
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biome; climate change; extreme event; global change; growth; interspecific interaction; plant community; tundra; article; plant community; prediction; tundra; warming; classification; climate; ecosystem; genetics; plant; plant development; Climate; Ecosystem; Plant Development; Plants; Tundra |
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The majority of variation in six traits critical to the growth, survival and reproduction of plant species is thought to be organised along just two dimensions, corresponding to strategies of plant size and resource acquisition. However, it is unknown whether global plant trait relationships extend to climatic extremes, and if these interspecific relationships are confounded by trait variation within species. We test whether trait relationships extend to the cold extremes of life on Earth using the largest database of tundra plant traits yet compiled. We show that tundra plants demonstrate remarkably similar resource economic traits, but not size traits, compared to global distributions, and exhibit the same two dimensions of trait variation. Three quarters of trait variation occurs among species, mirroring global estimates of interspecific trait variation. Plant trait relationships are thus generalizable to the edge of global trait-space, informing prediction of plant community change in a warming world. © 2020, Crown. |
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Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Postbus 94240, Amsterdam, 1090 GE, Netherlands |
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Nature Research |
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20411723 (Issn) |
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EcoFoG @ webmaster @ |
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947 |
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Teixeia, G. A. ; de Aguiar, H.J.A.C. ; Petitclerc, F. ; Orivel, J. ; Lopes, D.M. ; Barros, L.A.C. |
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Evolutionary insights into the genomic organization of major ribosomal DNA in ant chromosomes |
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Journal Article |
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2021 |
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Insect Molecular Biology |
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30 |
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3 |
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340-354 |
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The major rDNA genes are composed of tandem repeats and are part of the nucleolus organizing regions (NORs). They are highly conserved and therefore useful in understanding the evolutionary patterns of chromosomal locations. The evolutionary dynamics of the karyotype may affect the organization of rDNA genes within chromosomes. In this study, we physically mapped 18S rDNA genes in 13 Neotropical ant species from four subfamilies using fluorescence in situ hybridization. Furthermore, a survey of published rDNA cytogenetic data for 50 additional species was performed, which allowed us to detect the evolutionary patterns of these genes in ant chromosomes. Species from the Neotropical, Palearctic, and Australian regions, comprising a total of 63 species from 19 genera within six subfamilies, were analysed. Most of the species (48 out of 63) had rDNA genes restricted to a single chromosome pair in their intrachromosomal regions. The position of rDNA genes within the chromosomes appears to hinder their dispersal throughout the genome, as translocations and ectopic recombination are uncommon in intrachromosomal regions because they can generate meiotic abnormalities. Therefore, rDNA genes restricted to a single chromosome pair seem to be a plesiomorphic feature in ants, while multiple rDNA sites, observed in distinct subfamilies, may have independent origins in different genera. |
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Royal Entomological Society |
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EcoFoG @ webmaster @ |
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1048 |
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Author |
Coste, S.; Roggy, J.C.; Schimann, H.; Epron, D.; Dreyer, E. |
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A cost-benefit analysis of acclimation to low irradiance in tropical rainforest tree seedlings: leaf life span and payback time for leaf deployment |
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Journal Article |
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2011 |
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Journal of Experimental Botany |
Abbreviated Journal |
J. Exp. Bot. |
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62 |
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11 |
Pages |
3941-3955 |
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Carbon balance; construction cost; functional diversity; leaf life span; payback time; photosynthesis; tropical rainforest |
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Abstract |
The maintenance in the long run of a positive carbon balance under very low irradiance is a prerequisite for survival of tree seedlings below the canopy or in small gaps in a tropical rainforest. To provide a quantitative basis for this assumption, experiments were carried out to determine whether construction cost (CC) and payback time for leaves and support structures, as well as leaf life span (i) differ among species and (ii) display an irradiance-elicited plasticity. Experiments were also conducted to determine whether leaf life span correlates to CC and payback time and is close to the optimal longevity derived from an optimization model. Saplings from 13 tropical tree species were grown under three levels of irradiance. Specific-CC was computed, as well as CC scaled to leaf area at the metamer level. Photosynthesis was recorded over the leaf life span. Payback time was derived from CC and a simple photosynthesis model. Specific-CC displayed only little interspecific variability and irradiance-elicited plasticity, in contrast to CC scaled to leaf area. Leaf life span ranged from 4 months to > 26 months among species, and was longest in seedlings grown under lowest irradiance. It was always much longer than payback time, even under the lowest irradiance. Leaves were shed when their photosynthesis had reached very low values, in contrast to what was predicted by an optimality model. The species ranking for the different traits was stable across irradiance treatments. The two pioneer species always displayed the smallest CC, leaf life span, and payback time. All species displayed a similar large irradiance-elicited plasticity. |
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[Coste, S; Epron, D; Dreyer, E] INRA, UMR1137, Ctr INRA Nancy, F-54280 Champenoux, France, Email: dreyer@nancy.inra.fr |
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Oxford Univ Press |
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0022-0957 |
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WOS:000292838700021 |
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EcoFoG @ webmaster @ |
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331 |
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Cereghino, R.; Leroy, C.; Dejean, A.; Corbara, B. |
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Title |
Ants mediate the structure of phytotelm communities in an ant-garden bromeliad |
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Journal Article |
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2010 |
Publication |
Ecology |
Abbreviated Journal |
Ecology |
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91 |
Issue |
5 |
Pages |
1549-1556 |
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Keywords |
Aechmea mertensii; ant-gardens; biodiversity; bromeliads; Camponotus femoratus; Crematogaster levior; macroinvertebrates; mutualism; Pachycondyla goeldii; phytotelmata; secondary forest; Sinnamary; French Guiana; species interactions |
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Abstract |
The main theories explaining the biological diversity of rain forests often confer a limited understanding of the contribution of interspecific interactions to the observed patterns. We show how two-species mutualisms can affect much larger segments of the invertebrate community in tropical rain forests. Aechmea mertensii (Bromeliaceae) is both a phytotelm (plant-held water) and an ant-garden epiphyte. We studied the influence of its. associated ant species (Pachycondyla goeldii and Camponotus femoratus) on the physical characteristics of the plants, and, subsequently, on the diversity of the invertebrate communities that inhabit their tanks. As dispersal agents for the bromeliads, P. goeldii and C. femoratus influence the shape and size of the bromeliad by determining the location of the seedling, from exposed to partially shaded areas. By coexisting on a local scale, the two ant species generate a gradient of habitat conditions in terms of available resources (space and food) for aquatic invertebrates, the diversity of the invertebrate communities increasing with greater volumes of water and fine detritus. Two-species mutualisms are widespread in nature, but their influence on the diversity of entire communities remains largely unexplored. Because macroinvertebrates constitute an important part of animal production in all ecosystem types, further investigations should address the functional implications of such indirect effects. |
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Address |
[Cereghino, Regis] Univ Toulouse, UPS, INPT, Lab Ecol Fonct,EcoLab, F-31062 Toulouse, France, Email: cereghin@cict.fr |
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ECOLOGICAL SOC AMER |
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0012-9658 |
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ISI:000277867600030 |
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EcoFoG @ eric.marcon @ |
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59 |
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