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Author |
Vedel, V.; Scotti, I. |
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Title |
Promoting the promoter |
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Journal Article |
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Year |
2011 |
Publication |
Plant Science |
Abbreviated Journal  |
Plant Sci. |
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Volume |
180 |
Issue |
2 |
Pages |
182-189 |
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Keywords |
cis-Regulation; Evolutionary and developmental biology; Integrative evolution; Plant development; Population genetics; Transcription |
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Abstract |
Recent evolutionary studies clearly indicate that evolution is mainly driven by changes in the complex mechanisms of gene regulation and not solely by polymorphism in protein-encoding genes themselves. After a short description of the cis-regulatory mechanism, we intend in this review to argue that by applying newly available technologies and by merging research areas such as evolutionary and developmental biology, population genetics, ecology and molecular cell biology it is now possible to study evolution in an integrative way. We contend that, by analysing the effects of promoter sequence variation on phenotypic diversity in natural populations, we will soon be able to break the barrier between the study of extant genetic variability and the study of major developmental changes. This will lead to an integrative view of evolution at different scales. Because of their sessile nature and their continuous development, plants must permanently regulate their gene expression to react to their environment, and can, therefore, be considered as a remarkable model for these types of studies. (C) 2010 Elsevier Ireland Ltd. All rights reserved. |
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[Vedel, Vincent; Scotti, Ivan] INRA, UMR ECOFOG, Kourou 97387, French Guiana, Email: vincent.vedel@ecofog.gf |
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ELSEVIER IRELAND LTD |
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0168-9452 |
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ISI:000286562200002 |
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EcoFoG @ eric.marcon @ |
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291 |
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Author |
Castro, H.; Fortunel, C.; Freitas, H. |
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Title |
Effects of land abandonment on plant litter decomposition in a Montado system: relation to litter chemistry and community functional parameters |
Type |
Journal Article |
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Year |
2010 |
Publication |
Plant and Soil |
Abbreviated Journal |
Plant Soil |
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Volume |
333 |
Issue |
1-2 |
Pages |
181-190 |
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Keywords |
Ecosystem processes; Land use change; Leaf dry matter content; Life form; Litter quality; Mediterranean |
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Abstract |
Changes in land use and subsequent shifts in vegetation can influence decomposition through changes in litter quality (chemistry and structure) and alterations of soil temperature and moisture. Our aim was to study the effects of land abandonment on litter decomposition in a Mediterranean area of Montado, South Portugal. We tested the hypothesis that decomposition tends to slow down with abandonment, as woody species, richer in lignified structures, replace herbaceous species. We assessed the decomposition of community litter in situ using litterbag technique. To test the influence of local conditions, we simultaneously incubated a standard litter in situ. Our results showed that the shift from herbaceous to shrub-dominated communities lead to decreased decomposition rates. Changes in litter decomposition were primarily driven by changes in litter quality, even though the uneven pattern of litter mass loss over the experiment might reveal an effect from possible differences in microclimate. Shrub litter had higher nutrient content than herbaceous litter, which seemed to favour higher initial decomposition rates, but lower decomposition rate in the longer term. Shrubs also contribute to woody litter, richer in lignin, and secondary compounds that retard decomposition, and may play a role in increasing pools of slowly decomposing organic matter. |
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[Castro, Helena; Freitas, Helena] Univ Coimbra, Dept Life Sci, Ctr Funct Ecol, P-3001401 Coimbra, Portugal, Email: hecastro@ci.uc.pt |
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0032-079X |
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ISI:000280089400015 |
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EcoFoG @ eric.marcon @ |
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49 |
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Tremolieres, M.; Noel, V.; Herault, B. |
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Title |
Phosphorus and nitrogen allocation in Allium ursinum on an alluvial floodplain (Eastern France). Is there an effect of flooding history? |
Type |
Journal Article |
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Year |
2009 |
Publication |
Plant and Soil |
Abbreviated Journal |
Plant Soil |
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Volume |
324 |
Issue |
1-2 |
Pages |
279-289 |
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Keywords |
Allium ursinum; Flooding history; Nitrogen; Nutrient bioavailability; Phosphorus; Rhine |
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Abstract |
The change in phosphorus and nitrogen content in a common geophyte spring species, Allium ursinum, is studied in alluvial forests in relation to three flooding histories related to river regulation: (1) annually flooded, (2) unflooded for 30 years, and (3) unflooded for 200 years. Flood suppression leads to a reduction of available P soil content as well as decreasing the biomass and the amount of phosphorus in plants, but has no significant effect on N plant content. Plant N:P ratio increases with the suppression of floods and is primarily driven by soil N:P ratios, in turn markedly linked to the total nitrogen in the soil. We highlighted a lower nutrient accumulation in leaves during plant growth in unflooded forests. Overall, our results suggest that P was the main limiting factor in unflooded forests while nitrogen was the main limiting factor in annually flooded forests. Flood suppression strongly affects the morphology and nutrient uptake by Allium ursinum and thus nutrient cycling in riverine forests. |
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[Tremolieres, Michele; Noel, Valerie] Inst Bot, LHYGES, UMR 7517, F-67083 Strasbourg, France, Email: michele.tremolieres@bota-ulp.u-strasbg.fr |
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0032-079X |
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Notes |
ISI:000271028800020 |
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no |
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EcoFoG @ eric.marcon @ |
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99 |
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Author |
Brechet, L.; Ponton, S.; Roy, J.; Freycon, V.; Couteaux, M.M.; Bonal, D.; Epron, D. |
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Title |
Do tree species characteristics influence soil respiration in tropical forests? A test based on 16 tree species planted in monospecific plots |
Type |
Journal Article |
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Year |
2009 |
Publication |
Plant and Soil |
Abbreviated Journal |
Plant Soil |
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Volume |
319 |
Issue |
1-2 |
Pages |
235-246 |
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Keywords |
Fine root; Litter quality; Nutrient cycling; Plant soil interactions; Soil respiration; Tropical plantations |
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Abstract |
The high spatial variability of soil respiration in tropical rainforests is well evaluated, but influences of biotic factors are not clearly understood. This study underlines the influence of tree species characteristics on soil respiration across a 16-monospecific plot design in a tropical plantation of French Guiana. A large variability of soil CO2 fluxes was observed among plots (i.e. 2.8 to 6.8 μmol m(-2) s(-1)) with the ranking being constant across seasons. There were no significant relationships between soil respiration and soil moisture or soil temperature, neither spatially, nor seasonally. The variability of soil respiration was mainly explained by quantitative factors such as leaf litterfall and basal area. Surprisingly, no significant relationship was observed between soil respiration and root biomass. However, the influence of substrate quality was revealed by a strong relationship between soil respiration and litterfall P (and litterfall N, to a lesser extent). |
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[Ponton, Stephane] Natl Inst Agr Res INRA Ctr Rech Nancy, Forest Ecol & Ecophysiol Unit, UMR EEF, F-54280 Seichamps, France, Email: ponton@nancy.inra.fr |
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0032-079X |
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Notes |
ISI:000266143400020 |
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no |
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Call Number |
EcoFoG @ eric.marcon @ |
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110 |
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Prevost-Boure, N.C.; Ngao, J.; Berveiller, D.; Bonal, D.; Damesin, C.; Dufrene, E.; Lata, J.C.; Le Dantec, V.; Longdoz, B.; Ponton, S.; Soudani, K.; Epron, D. |
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Title |
Root exclusion through trenching does not affect the isotopic composition of soil CO2 efflux |
Type |
Journal Article |
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Year |
2009 |
Publication |
Plant and Soil |
Abbreviated Journal |
Plant Soil |
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Volume |
319 |
Issue |
1-2 |
Pages |
1-13 |
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Keywords |
Stable carbon isotopes; Natural abundance; Soil respiration; Trenched plot; Rainforest; Temperate forest |
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Abstract |
Disentangling the autotrophic and heterotrophic components of soil CO2 efflux is critical to understanding the role of soil system in terrestrial carbon (C) cycling. In this study, we combined a stable C-isotope natural abundance approach with the trenched plot method to determine if root exclusion significantly affected the isotopic composition (delta C-13) of soil CO2 efflux (R-S). This study was performed in different forest ecosystems: a tropical rainforest and two temperate broadleaved forests, where trenched plots had previously been installed. At each site, R-S and its delta C-13 (delta C-13(Rs)) tended to be lower in trenched plots than in control plots. Contrary to R-S, delta C-13(Rs) differences were not significant. This observation is consistent with the small differences in delta C-13 measured on organic matter from root, litter and soil. The lack of an effect on delta C-13(Rs) by root exclusion could be from the small difference in delta C-13 between autotrophic and heterotrophic soil respirations, but further investigations are needed because of potential artefacts associated with the root exclusion technique. |
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[Prevost-Boure, Nicolas Chemidlin; Berveiller, Daniel; Damesin, Claire; Dufrene, Eric; Lata, Jean-Christophe; Soudani, Kamel] Univ Paris Sud, Lab Ecol Systemat & Evolut, AgroParisTech, CNRS,UMR 8079, F-75231 Paris, France, Email: nicolas.chemidlin-prevost-boure@u-psud.fr |
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SPRINGER |
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0032-079X |
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ISI:000266143400001 |
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no |
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EcoFoG @ eric.marcon @ |
Serial |
203 |
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Author |
Coq, S.; Weigel, J.; Butenschoen, O.; Bonal, D.; Hattenschwiler, S. |
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Title |
Litter composition rather than plant presence affects decomposition of tropical litter mixtures |
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Journal Article |
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Year |
2011 |
Publication |
Plant and Soil |
Abbreviated Journal |
Plant Soil |
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Volume |
343 |
Issue |
1-2 |
Pages |
273-286 |
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Keywords |
Amazonian lowland rainforest; Belowground/aboveground interactions; Litter decomposition; Non-additive effect; Nitrogen dynamic; Plant-soil feedback |
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Abstract |
Litter decomposition is strongly controlled by litter quality, but the composition of litter mixtures and potential interactions with live plants through root activity may also influence decomposers. In a greenhouse experiment in French Guiana we studied the combined effects of the presence of tropical tree seedlings and of distinct litter composition on mass and nitrogen (N) loss from decomposing litter and on microbial biomass. Different litter mixtures decomposed for 435 days in pots filled with sand and containing an individual seedling from one of four different tree species. We found both additive and negative non-additive effects (NAE) of litter mixing on mass loss, whereas N loss showed negative and positive NAE of litter mixing. If litter from the two tree species, Platonia insignis and Goupia glabra were present, litter mixtures showed more positive and more negative NAE on N loss, respectively. Overall, decomposition, and in particular non-additive effects, were only weakly affected by the presence of tree seedlings. Litter mass loss weakly yet significantly decreased with increasing fine root biomass in presence of Goupia seedlings, but not in the presence of seedlings of any other tree species. Our results showed strong litter composition effects and also clear, mostly negative, non-additive effects on mass loss and N loss. Species identity of tree seedlings can modify litter decomposition, but these live plant effects remain quantitatively inferior to litter composition effects. |
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[Coq, Sylvain; Haettenschwiler, Stephan] CNRS, CEFE, F-34293 Montpellier 5, France, Email: sylvain.coq@gmail.com |
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Springer |
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0032-079x |
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ISI:000290688000020 |
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EcoFoG @ webmaster @ |
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320 |
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Bréchet, L.; Ponton, S.; Alméras, T.; Bonal, D.; Epron, D. |
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Title |
Does spatial distribution of tree size account for spatial variation in soil respiration in a tropical forest? |
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Journal Article |
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Year |
2011 |
Publication |
Plant and Soil |
Abbreviated Journal |
Plant Soil |
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Volume |
347 |
Issue |
1 |
Pages |
293-303 |
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Keywords |
Forest structure; Litterfall; Root mass; Soil respiration; Spatial variation; Tropical forest; aboveground production; forest inventory; litterfall; range size; size distribution; soil respiration; spatial distribution; spatial variation; stand dynamics; tropical forest |
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We explored the relationship between soil processes, estimated through soil respiration (Rsoil), and the spatial variation in forest structure, assessed through the distribution of tree size, in order to understand the determinism of spatial variations in Rsoil in a tropical forest. The influence of tree size was examined using an index (Ic) calculated for each tree as a function of (1) the trunk cross section area and (2) the distance from the measurement point. We investigated the relationships between Ic and litterfall, root mass and Rsoil, respectively. Strong significant relationships were found between Ic and both litterfall and root mass. Rsoil showed a large range of variations over the 1-ha experimental plot, from 1. 5 to 12. 6 gC m-2 d-1. The best relationship between Ic and Rsoil only explained 17% of the spatial variation in Rsoil. These results support the assumption that local spatial patterns in litter production and root mass depend on tree distribution in tropical forests. Our study also emphasizes the modest contribution of tree size distribution-which is mainly influenced by the presence of the biggest trees (among the large range size of the inventoried trees greater than 10 cm diameter at 1. 30 m above ground level or at 0. 5 m above the buttresses)-in explaining spatial variations in Rsoil. © 2011 Springer Science+Business Media B.V. |
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Nancy Université, Université Henri Poincaré, UMR 1137, Ecologie et Ecophysiologie Forestières, Faculté des Sciences, 54500 Vandoeuvre les Nancy, France |
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0032079x (Issn) |
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Export Date: 21 October 2011; Source: Scopus; Coden: Plsoa; doi: 10.1007/s11104-011-0848-1; Language of Original Document: English; Correspondence Address: Bréchet, L.; INRA, UMR Ecologie des Forêts de Guyane, Campus Agronomique, BP 709, 97387 Kourou cedex, French Guiana; email: laetitiabrechet@yahoo.fr |
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EcoFoG @ webmaster @ |
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345 |
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Van Langenhove, L.; Depaepe, T.; Vicca, S.; van den Berge, J.; Stahl, C.; Courtois, E.; Weedon, J.; Urbina, I.; Grau, O.; Asensio, D.; Peñuelas, J.; Boeckx, P.; Richter, A.; Van Der Straeten, D.; Janssens, I.A. |
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Title |
Regulation of nitrogen fixation from free-living organisms in soil and leaf litter of two tropical forests of the Guiana shield |
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Journal Article |
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Year |
2019 |
Publication |
Plant and Soil |
Abbreviated Journal |
Plant Soil |
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Free-living nitrogen fixation; French Guiana; Molybdenum; Nutrients; Phosphorus; Tropical forest |
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Background and aims: Biological fixation of atmospheric nitrogen (N 2 ) is the main pathway for introducing N into unmanaged ecosystems. While recent estimates suggest that free-living N fixation (FLNF) accounts for the majority of N fixed in mature tropical forests, the controls governing this process are not completely understood. The aim of this study was to quantify FLNF rates and determine its drivers in two tropical pristine forests of French Guiana. Methods: We used the acetylene reduction assay to measure FLNF rates at two sites, in two seasons and along three topographical positions, and used regression analyses to identify which edaphic explanatory variables, including carbon (C), nitrogen (N), phosphorus (P) and molybdenum (Mo) content, pH, water and available N and P, explained most of the variation in FLNF rates. Results: Overall, FLNF rates were lower than measured in tropical systems elsewhere. In soils seasonal variability was small and FLNF rates differed among topographies at only one site. Water, P and pH explained 24% of the variation. In leaf litter, FLNF rates differed seasonally, without site or topographical differences. Water, C, N and P explained 46% of the observed variation. We found no regulatory role of Mo at our sites. Conclusions: Rates of FLNF were low in primary rainforest on poor soils on the Guiana shield. Water was the most important rate-regulating factor and FLNF increased with increasing P, but decreased with increasing N. Our results support the general assumption that N fixation in tropical lowland forests is limited by P availability. © 2019, The Author(s). |
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Department of Microbiology and Ecosystem Science, University of Vienna, Althanstr. 14, Vienna, 1090, Austria |
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Springer International Publishing |
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EcoFoG @ webmaster @ |
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868 |
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Van Langenhove, L.; Depaepe, T.; Vicca, S.; van den Berge, J.; Stahl, C.; Courtois, E.; Weedon, J.; Urbina, I.; Grau, O.; Asensio, D.; Peñuelas, J.; Boeckx, P.; Richter, A.; Van Der Straeten, D.; Janssens, I.A. |
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Regulation of nitrogen fixation from free-living organisms in soil and leaf litter of two tropical forests of the Guiana shield |
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Journal Article |
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Year |
2020 |
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Plant and Soil |
Abbreviated Journal |
Plant Soil |
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Volume |
450 |
Issue |
1-2 |
Pages |
93-110 |
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Keywords |
Free-living nitrogen fixation; French Guiana; Molybdenum; Nutrients; Phosphorus; Tropical forest; acetylene; leaf litter; molybdenum; nitrogen fixation; nutrient cycling; phosphorus; rainforest; reduction; soil biota; soil carbon; soil nitrogen; soil water; topographic effect; tropical forest; French Guiana |
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Abstract |
Background and aims: Biological fixation of atmospheric nitrogen (N2) is the main pathway for introducing N into unmanaged ecosystems. While recent estimates suggest that free-living N fixation (FLNF) accounts for the majority of N fixed in mature tropical forests, the controls governing this process are not completely understood. The aim of this study was to quantify FLNF rates and determine its drivers in two tropical pristine forests of French Guiana. Methods: We used the acetylene reduction assay to measure FLNF rates at two sites, in two seasons and along three topographical positions, and used regression analyses to identify which edaphic explanatory variables, including carbon (C), nitrogen (N), phosphorus (P) and molybdenum (Mo) content, pH, water and available N and P, explained most of the variation in FLNF rates. Results: Overall, FLNF rates were lower than measured in tropical systems elsewhere. In soils seasonal variability was small and FLNF rates differed among topographies at only one site. Water, P and pH explained 24% of the variation. In leaf litter, FLNF rates differed seasonally, without site or topographical differences. Water, C, N and P explained 46% of the observed variation. We found no regulatory role of Mo at our sites. Conclusions: Rates of FLNF were low in primary rainforest on poor soils on the Guiana shield. Water was the most important rate-regulating factor and FLNF increased with increasing P, but decreased with increasing N. Our results support the general assumption that N fixation in tropical lowland forests is limited by P availability. © 2019, The Author(s). |
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Department of Microbiology and Ecosystem Science, University of Vienna, Althanstr. 14, Vienna, 1090, Austria |
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Springer |
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EcoFoG @ webmaster @ |
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971 |
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Urbina, I.; Grau, O.; Sardans, J.; Ninot, J.M.; Peñuelas, J. |
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Title |
Encroachment of shrubs into subalpine grasslands in the Pyrenees changes the plant-soil stoichiometry spectrum |
Type |
Journal Article |
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Year |
2020 |
Publication |
Plant and Soil |
Abbreviated Journal |
Plant Soil |
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Volume |
448 |
Issue |
1-2 |
Pages |
37-53 |
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Keywords |
Nutrient stocks; Plant strategy; Plant-soil stoichiometry; Shrub encroachment; Subalpine grassland succession; aboveground biomass; biogeochemical cycle; carbon sequestration; ectomycorrhiza; fungus; grass; nitrogen; nutrient uptake; shrub; soil-vegetation interaction; stoichiometry; subalpine environment; succession; Europe; Pyrenees; Fungi |
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Abstract |
Aims: Shrub encroachment has been reported over a large proportion of the subalpine grasslands across Europe and is expected to have an important impact on the biogeochemical cycle of these ecosystems. We investigated the stoichiometric changes in the plant-soil system along the succession (e.g. increase in encroachment from unencroached grassland to mature shrubland) at two contrasting sites in the Pyrenees. Methods: We analyzed the chemical composition (C, N,15N, P, K, Ca, Mg and Fe) in the soil and in the aboveground plant compartments (leaves, leaf-litter and stems) of the main herbaceous species and shrubs at three contrasting stages of the succession: unencroached grassland, young shrubland and mature shrubland. Results: The plant-soil stoichiometry spectrum differed between the successional stages. Shrub encroachment generally increased the concentration of C and Ca and the C:N ratio and often reduced to concentrations of N, P and K in the leaves and leaf-litter, while several soil nutrient concentrations (N, P, K Ca and Mg) decreased. The stocks of C, N, P, Ca, and Mg in the total aboveground biomass increased with encroachment. Conclusions: Shrub encroachment favored the dominance of long-lived species with low concentrations of N and P in the plant-soil compartments, high C:nutrient ratios in the aboveground biomass and increase the uptake of N through ericoid or ectomycorrhizal fungi. We highlight the role of shrubs in the sequestration of C and nutrients through the allocation to the aboveground biomass. The changes in plant-soil elemental composition and stocks suggest a slowdown of the biogeochemical cycles in the subalpine mountain areas where shrub encroachment occurred. © 2020, Springer Nature Switzerland AG. |
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Biodiversity Research Institute (IRBio) and Department of Evolutionary Biology, Ecology and Environmental Sciences, University of Barcelona, Barcelona, Catalonia, Spain |
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Springer |
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0032079x (Issn) |
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EcoFoG @ webmaster @ |
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983 |
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