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Aili, S. R., Touchard, A., Hayward, R., Robinson, S. D., Pineda, S. S., Lalagüe, H., et al. (2020). An integrated proteomic and transcriptomic analysis reveals the venom complexity of the bullet ant Paraponera clavata. Toxins, 12(5).
Abstract: A critical hurdle in ant venom proteomic investigations is the lack of databases to comprehensively and specifically identify the sequence and function of venom proteins and peptides. To resolve this, we used venom gland transcriptomics to generate a sequence database that was used to assign the tandem mass spectrometry (MS) fragmentation spectra of venom peptides and proteins to specific transcripts. This was performed alongside a shotgun liquid chromatography-mass spectrometry (LC-MS/MS) analysis of the venom to confirm that these assigned transcripts were expressed as proteins. Through the combined transcriptomic and proteomic investigation of Paraponera clavata venom, we identified four times the number of proteins previously identified using 2D-PAGE alone. In addition to this, by mining the transcriptomic data, we identified several novel peptide sequences for future pharmacological investigations, some of which conform with inhibitor cysteine knot motifs. These types of peptides have the potential to be developed into pharmaceutical or bioinsecticide peptides. © 2020 by the authors. Licensee MDPI, Basel, Switzerland.
Keywords: DRG neurons; Hyaluronidase; Neurotoxins; Paraponeritoxin; Phospholipases; Rp-Hplc; alpha latrotoxin; ant venom; arginine kinase; cathepsin; contig; defensin 2; hyaluronidase; icarapin; metalloproteinase; neurotoxin; novel toxin like protein; phospholipase; phospholipase A2; poneratoxin; proteome; serine proteinase; transcriptome; unclassified drug; amino acid sequence; ant; Article; liquid chromatography-mass spectrometry; neurotoxicity; nonhuman; Paraponera clavata; protein expression; proteomics; sequence database; tandem mass spectrometry; transcriptomics; venom gland
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Touchard, A., Labrière, N., Roux, O., Petitclerc, F., Orivel, J., Escoubas, P., et al. (2014). Venom toxicity and composition in three Pseudomyrmex ant species having different nesting modes. Toxicon, 88, 67–76.
Abstract: We aimed to determine whether the nesting habits of ants have influenced their venom toxicity and composition. We focused on the genus Pseudomyrmex (Pseudomyrmecinae) comprising terrestrial and arboreal species, and, among the latter, plant-ants that are obligate inhabitants of myrmecophytes (i.e., plants sheltering ants in hollow structures). Contrary to our hypothesis, the venom of the ground-dwelling species, Pseudomyrmex termitarius, was as efficacious in paralyzing prey as the venoms of the arboreal and the plant-ant species, Pseudomyrmexpenetrator and Pseudomyrmexgracilis. The lethal potency of P. termitarius venom was equipotent with that of P. gracilis whereas the venom of P. penetrator was less potent. The MALDI-TOF MS analysis of each HPLC fraction of the venoms showed that P. termitarius venom is composed of 87 linear peptides, while both P. gracilis and P. penetrator venoms (23 and 26 peptides, respectively) possess peptides with disulfide bonds. Furthermore, P. penetrator venom contains three hetero- and homodimeric peptides consisting of two short peptidic chains linked together by two interchain disulfide bonds. The large number of peptides in P. termitarius venom is likely related to the large diversity of potential prey plus the antibacterial peptides required for nesting in the ground. Whereas predation involves only the prey and predator, P. penetrator venom has evolved in an environment where trees, defoliating insects, browsing mammals and ants live in equilibrium, likely explaining the diversity of the peptide structures. © 2014 Elsevier Ltd. All rights reserved.
Keywords: Ant venoms; Ants; Arboreal and ground-nesting ants; Evolution; Peptides; Pseudomyrmex; ant venom; acute toxicity; animal experiment; ant; article; biochemical composition; controlled study; disulfide bond; high performance liquid chromatography; lethality; matrix assisted laser desorption ionization time of flight mass spectrometry; molecular weight; myrmecophyte; nesting; nonhuman; predator prey interaction; priority journal; Pseudomyrmex gracilis; Pseudomyrmex penetrator; Pseudomyrmex termitarius; species diversity; toxin analysis
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Aili, S. R., Touchard, A., Escoubas, P., Padula, M. P., Orivel, J., Dejean, A., et al. (2014). Diversity of peptide toxins from stinging ant venoms. Toxicon, 92, 166–178.
Abstract: Ants (Hymenoptera: Formicidae) represent a taxonomically diverse group of arthropods comprising nearly 13,000 extant species. Sixteen ant subfamilies have individuals that possess a stinger and use their venom for purposes such as a defence against predators, competitors and microbial pathogens, for predation, as well as for social communication. They exhibit a range of activities including antimicrobial, haemolytic, cytolytic, paralytic, insecticidal and pain-producing pharmacologies. While ant venoms are known to be rich in alkaloids and hydrocarbons, ant venoms rich in peptides are becoming more common, yet remain understudied. Recent advances in mass spectrometry techniques have begun to reveal the true complexity of ant venom peptide composition. In the few venoms explored thus far, most peptide toxins appear to occur as small polycationic linear toxins, with antibacterial properties and insecticidal activity. Unlike other venomous animals, a number of ant venoms also contain a range of homodimeric and heterodimeric peptides with one or two interchain disulfide bonds possessing pore-forming, allergenic and paralytic actions. However, ant venoms seem to have only a small number of monomeric disulfide-linked peptides. The present review details the structure and pharmacology of known ant venom peptide toxins and their potential as a source of novel bioinsecticides and therapeutic agents.
Keywords: Ant venom; Chemotaxonomy; Disulfide linkage; Peptides; Venom biochemistry
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Nixon, S., Agwa, A., Robinson, S., Walker, A., Touchard, A., Schroeder, C., et al. (2020). Discovery and characterisation of novel peptides from Amazonian stinging ant venoms with antiparasitic activity. Toxicon, 177(1), S60.
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Scotti-Saintagne, C., Bodenes, C., Barreneche, T., Bertocchi, E., Plomion, C., & Kremer, A. (2004). Detection of quantitative trait loci controlling bud burst and height growth in Quercus robur L. Theor. Appl. Genet., 109(8), 1648–1659.
Abstract: Genetic variation of bud burst and early growth components was estimated in a full-sib family of Quercus robur L. comprising 278 offspring. The full sibs were vegetatively propagated, and phenotypic assessments were made in three field tests. This two-generation pedigree was also used to construct a genetic linkage map (12 linkage groups, 128 markers) and locate quantitative trait loci (QTLs) controlling bud burst and growth components. In each field test, the date of bud burst extended over a period of 20 days from the earliest to the latest clone. Bud burst exhibited higher heritability (0.15-0.51) than growth components (0.04-0.23) and also higher correlations across field tests. Over the three tests there were 32 independent detected QTLs (Pless than or equal to5% at the chromosome level) controlling bud burst, which likely represent at least 12 unique genes or chromosomal regions controlling this trait. QTLs explained from 3% to 11% of the variance of the clonal means. The number of QTLs controlling height growth components was lower and varied between two and four. However the contribution of each QTL to the variance of the clonal mean was higher (from 4% to 19%). These results indicate that the genetic architecture of two important fitness-related traits are quite different. On the one hand, bud burst is controlled by several QTLs with rather low to moderate effects, but contributing to a high genetic (additive) variance. On the other hand, height growth depends on fewer QTLs with moderate to strong effects, resulting in lower heritabilities of the trait.
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Siebicke, L., Hunner, M., & Foken, T. (2012). Aspects of CO 2 advection measurements. Theor. Appl. Climatol., 109(1-2), 109–131.
Abstract: Observations of vegetation-atmosphere exchange of carbon dioxide (CO 2) by the eddy covariance (EC) technique are limited by difficult conditions such as nighttime and heterogeneous terrain. Thus, advective flux components are included into the net ecosystem exchange (NEE) budget. However, advection measurements are experimentally challenging and do not always help to solve the night flux problem of the EC technique. This study investigates alternative methods for the observation of horizontal advection, in particular horizontal concentration gradients, as well as different approaches to coordinate rotation and vertical advection. Continuous high-frequency measurements of the horizontal CO 2 concentration field are employed and compared to the often used discontinuous sequential sampling. Significant differences were found in the case of 30-min mean concentration values between the conventional discontinuous sampling approach and the complete observation of the time series by continuous sampling. Estimates of vertical advection rely on accurate estimates of vertical wind velocity (W). Therefore, different approaches to the planar fit coordinate rotation have been investigated. Sector-wise rotation was able to eliminate directional dependencies of mean W. Furthermore, the effect of the data set length used for rotation (window length) was investigated and was found to have significant impact on estimates of vertical advection, with larger window lengths yielding about 50% larger vertical advection. A sequential planar fit with controlled window length is proposed to give reproducible results. The different approaches to the measurement and calculation of horizontal and vertical advection presented are applied to data obtained during the exchange processes in mountainous region experiment at the FLUXNET site Waldstein-Weidenbrunnen (DE-Bay). Estimates of NEE including advection are compared to NEE from turbulent and storage flux alone without advection. NEE including vertical advection with sector-wise planar fit rotation and controlled window length and including horizontal advection from continuous gradient measurements, which were comprehensively bias corrected by a new approach, did compare well with the expected night flux error, with meteorological drivers of the fluxes and with soil chamber measurements. Unrealistically large and noisy values of horizontal advection from the conventional discontinuous sampling approach, which lead to unrealistic values of NEE, could be eliminated by the alternative approaches presented. We therefore suggest the further testing of those approaches at other sites in order to improve the accuracy of advection measurements and, subsequently, estimates of NEE. © 2011 Springer-Verlag.
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Denis, T., Herault, B., Jaouen, G., Brunaux, O., Guitet, S., & Richard-Hansen, C. (2016). Black Curassow habitat relationships in terra firme forests of the Guiana Shield: A multiscale approach. The Condor, 118(2), 253–273.
Abstract: ABSTRACT The Black Curassow (Crax alector) is a large game bird with Vulnerable conservation status found in north-central South America. We examined its distributional pattern across French Guiana using a large number of environmental descriptors at 3 scales of analysis: landscape, forest type, and microhabitat. We used a hierarchical model with temporary emigration and imperfect detection for data collected by standard distance sampling methods at 35 study sites. At the landscape scale, Black Curassow density decreased with hunting pressure and increased with steeper slopes in both hunted and unhunted areas. Topography appeared to be a good proxy for Black Curassow ecological requirements and probably reflected habitat quality. At the forest scale, population density was negatively correlated with the abundance of palms and Mimosoideae and positively correlated with the abundance of Lauraceae. Botanical families did not directly influence Black Curassow distribution, but rather determined spatial patterns by being markers of a particular forest type. At the microhabitat scale, Black Curassows used hilltops more frequently than other parts of the local topographical gradient. Our multiscale analysis shows that this species' distribution can be explained by biotic or abiotic conditions, regardless of the scale. For conservation, we recommend maintaining connectivity between Black Curassow populations separated by hunted areas. Our predicted densities could be used to adapt hunting quotas across French Guiana's forests. We show that combining field and remote sensing data helps to understand the ecological processes responsible for Black Curassow habitat relationships.
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Rahali, H., & Stien, D. (2006). Highly-loaded amphiphilic polyimino resin: quench reagent and solid support for peptide synthesis. Tetrahedron Lett., 47(47), 8205–8207.
Abstract: We demonstrate herein that polyimino resin 4a prepared by condensation of alpha,alpha'-dichloro-p-xylene, ethylenediamine and tris-(2-aminoethyl)-amine can be successfully exploited as a quench reagent for acids and electrophiles both in aqueous and organic solutions. Scope and limitations of such a resin as a solid support for peptide synthesis were also investigated. (c) 2006 Elsevier Ltd. All rights reserved.
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Vedel, V., Rheims, C., Murienne, J., & Brescovit, A. D. (2013). Biodiversity baseline of the French Guiana spider fauna. SpringerPlus, 2(1), 1–19.
Abstract: The need for an updated list of spiders found in French Guiana rose recently due to many upcoming studies planned. In this paper, we list spiders from French Guiana from existing literature (with corrected nomenclature when necessary) and from 2142 spiders sampled in 12 sites for this baseline study. Three hundred and sixty four validated species names of spider were found in the literature and previous authors' works. Additional sampling, conducted for this study added another 89 identified species and 62 other species with only a genus name for now. The total species of spiders sampled in French Guiana is currently 515. Many other Morphospecies were found but not described as species yet. An accumulation curve was drawn with seven of the sampling sites and shows no plateau yet. Therefore, the number of species inhabiting French Guiana cannot yet be determined. As the very large number of singletons found in the collected materials suggests, the accumulation curve indicates nevertheless that more sampling is necessary to discover the many unknown spider species living in French Guiana, with a focus on specific periods (dry season and wet season) and on specific and poorly studied habitats such as canopy, inselberg and cambrouze (local bamboo monospecific forest). © 2013 Vedel et al.
Keywords: Arachnids; Araneae; Bio monitoring; French Guiana; Neotropics; Species richness
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Blanc, L., & Dick, J. M. (2003). Errors in repeated measurements of soil water content in pots using a ThetaProbe. Soil Use Manage., 19(1), 87–88.
Abstract: The accuracy of a ThetaProbe (Delta-T Devices Ltd, UK) to obtain repeated measures of soil water content in pot plants was tested. This alternative to balance determinations led to a large underestimation of water content, varying from 12.2 to 21.8% of the total water content, depending on soil type.
Keywords: measurement; soil water content; probes
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