PT Journal
AU Honorio Coronado, E
   Blanc-Jolivet, C
   Mader, M
   García-Dávila, C
   Sebbenn, A
   Meyer-Sand, B
   Paredes-Villanueva, K
   Tysklind, N
   Troispoux, V
   Massot, M
   Degen, B
TI Development of nuclear and plastid SNP markers for genetic studies of Dipteryx tree species in Amazonia
SO Conservation Genetics Resources
JI Conserv. Genet. Res.
PY 2019
BP 333
EP 336
VL 11
IS 3
DI 10.1007/s12686-019-01081-3
AB We developed nuclear and plastid single nucleotide polymorphism (SNP) and insertion/deletion (INDEL) markers for Dipteryx species using a combination of restriction associated DNA sequencing (RADSeq) and low coverage MiSeq genome sequencing. Of the total 315 loci genotyped using a MassARRAY platform, 292 loci were variable and polymorphic among the 73 sampled individuals from French Guiana, Brasil, Peru, and Bolivia. A final set of 56 nuclear SNPs, 26 chloroplast SNPs, 2 chloroplast INDELs, and 32 mitochondrial SNPs identifying significant population structure was developed. This set of loci will be useful for studies on population genetics of Dipteryx species in Amazonia.
ER