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Touchard, A.; Brust, A.; Cardoso, F.C.; Chin, Y.K.-Y.; Herzig, V.; Jin, A.-H.; Dejean, A.; Alewood, P.F.; King, G.F.; Orivel, J.; Escoubas, P. |
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Isolation and characterization of a structurally unique β-hairpin venom peptide from the predatory ant Anochetus emarginatus |
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Journal Article |
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2016 |
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Biochimica et Biophysica Acta – General Subjects |
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Biochimica et Biophysica Acta – General Subjects |
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1860 |
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11 |
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2553-2562 |
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Anochetus; Ant venom; Disulfide-rich peptides; L-type calcium channels; Neurotoxin; Poneritoxins; U1-PONTX-Ae1a |
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Background Most ant venoms consist predominantly of small linear peptides, although some contain disulfide-linked peptides as minor components. However, in striking contrast to other ant species, some Anochetus venoms are composed primarily of disulfide-rich peptides. In this study, we investigated the venom of the ant Anochetus emarginatus with the aim of exploring these novel disulfide-rich peptides. Methods The venom peptidome was initially investigated using a combination of reversed-phase HPLC and mass spectrometry, then the amino acid sequences of the major peptides were determined using a combination of Edman degradation and de novo MS/MS sequencing. We focused on one of these peptides, U1-PONTX-Ae1a (Ae1a), because of its novel sequence, which we predicted would form a novel 3D fold. Ae1a was chemically synthesized using Fmoc chemistry and its 3D structure was elucidated using NMR spectroscopy. The peptide was then tested for insecticidal activity and its effect on a range of human ion channels. Results Seven peptides named poneritoxins (PONTXs) were isolated and sequenced. The three-dimensional structure of synthetic Ae1a revealed a novel, compact scaffold in which a C-terminal β-hairpin is connected to the N-terminal region via two disulfide bonds. Synthetic Ae1a reversibly paralyzed blowflies and inhibited human L-type voltage-gated calcium channels (CaV1). Conclusions Poneritoxins from Anochetus emarginatus venom are a novel class of toxins that are structurally unique among animal venoms. General significance This study demonstrates that Anochetus ant venoms are a rich source of novel ion channel modulating peptides, some of which might be useful leads for the development of biopesticides. © 2016 |
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VenomeTech, 473 Route des Dolines, Valbonne, France |
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Export Date: 15 September 2016 |
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EcoFoG @ webmaster @ |
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694 |
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Céréghino, R.; Corbara, B.; Leroy, C.; Carrias, J.-F. |
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Ecological determinants of community structure across the trophic levels of freshwater food webs: a test using bromeliad phytotelmata |
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Journal Article |
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2020 |
Publication |
Hydrobiologia |
Abbreviated Journal |
Hydrobiologia |
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847 |
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2 |
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391-402 |
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Environmental filtering; Functional group; Neotropical; Niche; Trophic interactions; alga; assembly rule; bacterium; community structure; ecological modeling; environmental conditions; food web; freshwater ecosystem; functional group; Neotropic Ecozone; niche; protozoan; taxonomy; trophic interaction; trophic level; algae; Invertebrata; Protozoa |
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Understanding the relative importance of habitat and biotic drivers on community assembly across food web components is an important step towards predicting the consequences of environmental changes. Because documenting entire food webs is often impractical, this question has been only partially investigated. Here, we partitioned variation in species assemblages of the major components of tank bromeliad food webs (bacteria, algae, protozoans, detritivorous and predatory invertebrates) into habitat and biotic determinants and examined the influence of habitat variables and predator or prey abundance on all taxonomic assemblages. Ecological determinism of assemblage structure ranged from weak in bacteria (< 10% of the explained variance) to strong in predatory invertebrates (90%). Habitat features and canopy openness significantly influenced species assemblages; however, prey or predator density had far and away the most significant structuring effects. If biotic forces are at least as important as the abiotic forces while the importance of stochasticity declines towards upper trophic levels, then trophic levels could respond differently to natural or anthropogenic disturbance and to shifts in species distributions. The effects of such differential responses on food web reconfiguration, however, remain to be elucidated. © 2019, Springer Nature Switzerland AG. |
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UMR EcoFoG (AgroParisTech, CIRAD, CNRS, INRA, Université de Guyane, Université des Antilles), Kourou, 97310, France |
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00188158 (Issn) |
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996 |
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Leroy, C.; Corbara, B.; Dezerald, O.; Trzcinski, M.K.; Carrias, J.-F.; Dejean, A.; Céréghino, R. |
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What drives detrital decomposition in neotropical tank bromeliads? |
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Journal Article |
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2017 |
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Hydrobiologia |
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Hydrobiologia |
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802 |
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1 |
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85-95 |
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Context dependency; Ecosystem function; Food webs; Leaf litter; Phytotelmata; Rainforest |
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Decomposition experiments that control leaf litter species across environments help to disentangle the roles of litter traits and consumer diversity, but once we account for leaf litter effects, they tell us little about the variance in decomposition explained by shifts in environmental conditions versus food-web structure. We evaluated how habitat, food-web structure, leaf litter species, and the interactions between these factors affect litter mass loss in a neotropical ecosystem. We used water-filled bromeliads to conduct a reciprocal transplant experiment of two litter species between an open and a forested habitat in French Guiana, and coarse- and fine-mesh enclosures embedded within bromeliads to exclude invertebrates or allow them to colonize leaf litter disks. Soft Melastomataceae leaves decomposed faster in their home habitat, whereas tough Eperua leaves decomposed equally in both habitats. Bacterial densities did not differ significantly between the two habitats. Significant shifts in the identity and biomass of invertebrate detritivores across habitats did not generate differences in leaf litter decomposition, which was essentially microbial. Despite the obvious effects of habitats on food-web structure, ecosystem processes are not necessarily affected. Our results pose the question of when does environmental determinism matter for ecosystem functions, and when does it not. © 2017, Springer International Publishing Switzerland. |
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IRD – UMR AMAP, Campus agronomique, BP 316, Kourou Cedex, France |
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Export Date: 18 December 2017 |
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775 |
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Llusia, Joan ; Asensio, Dolores ; Sardans, Jordi ; Filella, Iolanda ; Peguero, Guille ; Grau, Oriol ; Ogaya, Roma ; Gargallo-Garriga, Albert ; Verryckt, Lore T. ; Van Langenhove, Leandro ; Brechet, Laëtitia M. ; Courtois, Elodie A. ; Stahl, Clément ; Janssens, Ivan A. ; Penuelas, Josep |
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Contrasting nitrogen and phosphorus fertilization effects on soil terpene exchanges in a tropical forest |
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2021 |
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Science of the Total Environment |
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802 |
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149769 |
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Production, emission, and absorption of biogenic volatile organic compounds (BVOCs) in ecosystem soils and associated impacts of nutrient availability are unclear; thus, predictions of effects of global change on source-sink dynamic under increased atmospheric N deposition and nutrition imbalances are limited. Here, we report the dynamics of soil BVOCs under field conditions from two undisturbed tropical rainforests from French Guiana. We analyzed effects of experimental soil applications of nitrogen (N), phosphorus (P), and N + P on soil BVOC exchanges (in particular of total terpenes, monoterpenes, and sesquiterpenes), to determine source and sink dynamics between seasons (dry and wet) and elevations (upper and lower elevations corresponding to top of the hills (30 m high) and bottom of the valley). We identified 45 soil terpenoids compounds emitted to the atmosphere, comprising 26 monoterpenes and 19 sesquiterpenes; of these, it was possible to identify 13 and 7 compounds, respectively. Under ambient conditions, soils acted as sinks of these BVOCs, with greatest soil uptake recorded for sesquiterpenes at upper elevations during the wet season (-282 μg m-2 h-1). Fertilization shifted soils from a sink to source, with greatest levels of terpene emissions recorded at upper elevations during the wet season, following the addition of N (monoterpenes: 406 μg m-2 h-1) and P (sesquiterpenes: 210 μg m-2 h-1). Total soil terpene emission rates were negatively correlated with total atmospheric terpene concentrations. These results indicate likely shifts in tropical soils from sink to source of atmospheric terpenes under projected increases in N deposition under global change, with potential impacts on regional-scale atmospheric chemistry balance and ecosystem function. |
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EcoFoG @ webmaster @ |
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1033 |
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Rodríguez-Pérez, H.; Hilaire, S.; Mesléard, F. |
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Temporary pond ecosystem functioning shifts mediated by the exotic red swamp crayfish (Procambarus clarkii): a mesocosm study |
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2016 |
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Hydrobiologia |
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Hydrobiologia |
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767 |
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1 |
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333-345 |
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Ecosystem functioning; Exotic crayfish; Procambarus clarkii; Temporary pond |
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Temporary ponds, acknowledged for their conservation value, are colonized by the invasive crayfish Procambarus clarkii. We have tested the consequences of this colonization for the ecosystem under two contrasted scenarios: one single individual arrival or three individuals arrival. We recreated the temporary pond ecosystem in 1 m2 tanks to investigate the impact of the two crayfish densities. We studied the macrophyte community composition and abundance, chlorophyll a and total suspended solids concentrations, and the diversity and functional composition of micro-crustacean and macro-invertebrate communities. We observed a reduction of macrophyte biomass in experimental crayfish mesocosms in comparison with control tanks, nearly 80 and 40% less in 3 and 1 crayfish/m2 tanks, respectively. The macrophyte community shifted, followed by a filamentous algae development, an increase of bare sediment and turbidity in crayfish tanks. The macro-invertebrate community suffered a richness loss of 28 and 22%, in 3 and 1 crayfish/m2 tanks, respectively. Functionally, macro-invertebrate diversity reduction most strongly affected the grazer, detritivore and predator trophic groups. Microcrustaceans seemed not to be affected by the introduction of the crayfish. The introduction of the crayfish greatly altered the ecosystem structure and subsequently the ecosystem functioning. © 2015, Springer International Publishing Switzerland. |
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EcoFoG, Ecologie des Forêts de Guyane, CNRS UMR 8172, Campus Agronomique, BP 316, Kourou Cedex, France |
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Export Date: 8 February 2016 |
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655 |
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Van Langenhove, Leandro ; Depaepe, Thomas ; Verryckt, Lore T. ; Fuchslueger, Lucia ; Donald, Julian ; Celine, Leroy ; Krishna Moorthy, Sruthi M. ; Gargallo-Garriga, Albert ; Farnon Ellwood, M. D.; Verbeeck, Hans ; Van Der Straeten, Dominique ; Penuelas, Josep ; Janssens, Ivan A. |
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Comparable canapy and soil free living nitrogen fixation rates in e lowland tropical forest |
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Journal Article |
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2021 |
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Science of the total environment |
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754 |
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Biodiversité ; Systématique ; phylogénie ; taxonomie ; Ecologie, Environnement ; Ecosystèmes ; Biologie végétale ; Botanique ; Biodiversité |
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Biological nitrogen fixation (BNF) is a fundamental part of nitrogen cycling in tropical forests, yet little is known about the contribution made by free-living nitrogen fixers inhabiting the often-extensive forest canopy. We used the acetylene reduction assay, calibrated with 15N2, to measure free-living BNF on forest canopy leaves, vascular epiphytes, bryophytes and canopy soil, as well as on the forest floor in leaf litter and soil. We used a combination of calculated and published component densities to upscale free-living BNF rates to the forest level. We found that bryophytes and leaves situated in the canopy in particular displayed high mass-based rates of free-living BNF. Additionally, we calculated that nearly 2 kg of nitrogen enters the forest ecosystem through free-living BNF every year, 40% of which was fixed by the various canopy components. Our results reveal that in the studied tropical lowland forest a large part of the nitrogen input through free-living BNF stems from the canopy, but also that the total nitrogen inputs by free-living BNF are lower than previously thought and comparable to the inputs of reactive nitrogen by atmospheric deposition. |
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Anglais |
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1006 |
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Dezerald, O.; Talaga, S.; Leroy, C.; Carrias, J.-F.; Corbara, B.; Dejean, A.; Céréghino, R. |
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Environmental determinants of macroinvertebrate diversity in small water bodies: Insights from tank-bromeliads |
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2014 |
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Hydrobiologia |
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Hydrobiologia |
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723 |
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1 |
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77-86 |
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Freshwater biodiversity; Linear mixed effect modelling; Microcosms; Phytotelmata; Ponds |
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The interlocking leaves of tank-forming bromeliads (Bromeliaceae) collect rainwater and detritus, thus creating a freshwater habitat for specialized organisms. Their abundance and the possibility of quantifying communities with accuracy give us unparalleled insight into how changes in local to regional environments influence community diversity in small water bodies. We sampled 365 bromeliads (365 invertebrate communities) along a southeastern to northwestern range in French Guiana. Geographic locality determined the species pool for bromeliad invertebrates, and local environments determined the abundance patterns through the selection of traits that are best adapted to the bromeliad habitats. Patterns in community structure mostly emerged from patterns of predator species occurrence and abundance across local-regional environments, while the set of detritivores remained constant. Water volume had a strong positive correlation with invertebrate diversity, making it a biologically relevant measure of the pools' carrying capacity. The significant effects of incoming detritus and incident light show that changes in local environments (e.g., the conversion of forest to cropping systems) strongly influence freshwater communities. Because changes in local environments do not affect detritivores and predators equally, one may expect functional shifts as sets of invertebrates with particular traits are replaced or complemented by other sets with different traits. © 2013 Springer Science+Business Media Dordrecht. |
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CNRS, EcoLab (UMR-CNRS 5245), 118 Route de Narbonne, 31062 Toulouse, France |
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EcoFoG @ webmaster @ |
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517 |
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Mirabel, A.; Hérault, B.; Marcon, E. |
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Diverging taxonomic and functional trajectories following disturbance in a Neotropical forest |
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2020 |
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Science of The Total Environment |
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720 |
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137397 |
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Community ecology; Disturbance trajectories; Intermediate disturbance hypothesis; Mid-term resilience; Neotropical forests; Taxonomic and functional biodiversity |
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In the current global change context, it is urgent to anticipate the fate of tropical forests. This means understanding tree community response to disturbance and the underlying processes. In that respect, we aim here to clarify taxonomic and functional post-disturbance trajectories, and determine the scope of the Intermediate Disturbance Hypothesis (IDH) that remains debated in tropical forests. We analyzed community trajectories following a disturbance gradient from 10 to 60% of above-ground biomass loss in a Neotropical forest over 30 years. We considered trajectories along time of community taxonomic and functional trajectories in terms of richness, evenness, composition, and redundancy. We based on the annual botanical inventories of 75 ha of a Neotropical forest and on large trait datasets comprising seven leaf, stem, and life-history traits. We identified a decoupling between taxonomic composition, differing among communities, and functional composition, similar among communities and convergent in the functional space. The taxonomic diversity followed humped-shaped trajectories along time after disturbance depending on the initial disturbance intensity, which validated the IDH (Intermediate Disturbance Hypothesis). The functional diversity trajectories, however, were homogeneous among plots and dismissed the IDH. We explained this decoupling by the variations in community functional redundancy that mitigated the functional impact of disturbance. Although consistent, the recovery of community composition, diversity, and redundancy remained divergent from the initial state after 30 years. These results acknowledged the need of decades-long cycles without disturbance to ensure community complete recovery. |
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0048-9697 |
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Maurice, L.; López, F.; Becerra, S.; Jamhoury, H.; Le Menach, K.; Dévier, M.-H.; Budzinski, H.; Prunier, J.; Juteau-Martineau, G.; Ochoa-Herrera, V.; Quiroga, D.; Schreck, E. |
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Drinking water quality in areas impacted by oil activities in Ecuador: Associated health risks and social perception of human exposure |
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2019 |
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Science of the Total Environment |
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Sci. Total Environ. |
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690 |
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1203-1217 |
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Demineralized waters; Domestic waters; Hydrocarbons; Metal(loid)s; Oil activities; Social risk perception; Benzene refining; Health; Health risks; Hydrocarbons; Petroleum refineries; Petroleum refining; Polycyclic aromatic hydrocarbons; Potable water; Risk assessment; Risk perception; Toluene; Trace elements; Water quality; Water wells; Zinc; Arsenic concentration; Demineralized water; Domestic water; Information sources; Living conditions; Microbiological analysis; Natural backgrounds; Oil activities; Water distribution systems |
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The unregulated oil exploitation in the Northern Ecuadorian Amazon Region (NEAR), mainly from 1964 to the 90's, led to toxic compounds largely released into the environment. A large majority of people living in the Amazon region have no access to drinking water distribution systems and collects water from rain, wells or small streams. The concentrations of major ions, trace elements, PAHs (polycyclic aromatic hydrocarbons) and BTEX (benzene, toluene, ethylbenzene, xylenes) were analyzed in different water sources to evaluate the impacts of oil extraction and refining. Samples were taken from the NEAR and around the main refinery of the country (Esmeraldas Oil Refinery/State Oil Company of Ecuador) and were compared with domestic waters from the Southern region, not affected by petroleum activities. In most of the samples, microbiological analysis revealed a high level of coliforms representing significant health risks. All measured chemical compounds in waters were in line with national and international guidelines, except for manganese, zinc and aluminum. In several deep-water wells, close to oil camps, toluene concentrations were higher than the natural background while PAHs concentrations never exceeded individually 2 ng·L−1. Water ingestion represented 99% of the total exposure pathways for carcinogenic and non-carcinogenic elements (mainly zinc) in adults and children, while 20% to 49% of the Total Cancer Risk was caused by arsenic concentrations. The health index (HI) indicates acceptable chronic effects for domestic use according the US-EPA thresholds. Nevertheless, these limits do not consider the cocktail effects of metallic and organic compounds. Furthermore, they do not include the social determinants of human exposure, such as socio-economic living conditions or vulnerability. Most (72%) of interviewed families knew sanitary risks but a discrepancy was observed between knowledge and action: religious beliefs, cultural patterns, information sources, experience and emotions play an important role front to exposure. © 2019 |
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Department of Environmental Sciences and Engineering, Gillings School of Global Public Health, University of North Carolina at Chapel HillNC 2759, United States |
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Elsevier B.V. |
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EcoFoG @ webmaster @ |
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Migliavacca, Mirco ; Musavi, Talie ; Mahecha, Miguel D. ; Nelson, Jacob A. ; Knauer, Jurgen ; Baldocchi, Dennis D. ; Perez-Priego, Oscar ; Christiansen, Rune ; Peters, Jonas ; Anderson, Karen ; Bahn, Michael ; Black, T. Andrew ; Blanken, Peter D. ; and all .................. |
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The three major axes of terrestrial ecosystem function |
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2021 |
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Nature |
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598 |
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7881 |
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468-472 |
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The leaf economics spectrum1,2 and the global spectrum of plant forms and functions3 revealed fundamental axes of variation in plant traits, which represent different ecological strategies that are shaped by the evolutionary development of plant species2. Ecosystem functions depend on environmental conditions and the traits of species that comprise the ecological communities4. However, the axes of variation of ecosystem functions are largely unknown, which limits our understanding of how ecosystems respond as a whole to anthropogenic drivers, climate and environmental variability4,5. Here we derive a set of ecosystem functions6 from a dataset of surface gas exchange measurements across major terrestrial biomes. We find that most of the variability within ecosystem functions (71.8%) is captured by three key axes. The first axis reflects maximum ecosystem productivity and is mostly explained by vegetation structure. The second axis reflects ecosystem water-use strategies and is jointly explained by variation in vegetation height and climate. The third axis, which represents ecosystem carbon-use efficiency, features a gradient related to aridity, and is explained primarily by variation in vegetation structure. We show that two state-of-the-art land surface models reproduce the first and most important axis of ecosystem functions. However, the models tend to simulate more strongly correlated functions than those observed, which limits their ability to accurately predict the full range o |
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Nature Publishing Group |
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EcoFoG @ webmaster @ |
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1044 |
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