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Lacau, S.; Groc, S.; Dejean, A.; Oliveira, M.L.D.; Delabie, J.H.C. |
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Tatuidris kapasi sp. nov.: A new armadillo ant from French Guiana (Formicidae: Agroecomyrmecinae) |
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2012 |
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Psyche |
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Psyche |
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926089 |
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1-6 |
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Tatuidris kapasi sp. nov. (Formicidae: Agroecomyrmecinae), the second known species of “armadillo ant”, is described after a remarkable specimen collected in French Guiana. This species can be easily distinguished from Tatuidris tatusia by characters related to the shape of the mesosoma and petiole as well as to the pilosity, the sculpture, and the color. Copyright © 2012 Sébastien Lacau et al. |
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Laboratório de Mirmecologia, CEPLAC/CEPEC/SECEN, CP 07, km 22, Rodovia, Ilhéus-Itabuna, 45600-970 Itabuna, BA, Brazil |
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00332615 (Issn) |
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Export Date: 28 March 2012; Source: Scopus; Art. No.: 926089; doi: 10.1155/2012/926089; Language of Original Document: English; Correspondence Address: Lacau, S.; Laboratório de Biossistemática Animal, Universidade Estadual Do Sudoeste da Bahia, UESB/DEBI, 45700-000 Itapetinga, BA, Brazil; email: slacau@cepec.gov.br |
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EcoFoG @ webmaster @ |
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389 |
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Wagner, F.; Rossi, V.; Stahl, C.; Bonal, D.; Herault, B. |
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Water availability is the main climate driver of neotropical tree growth |
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Journal Article |
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2012 |
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PLoS ONE |
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PLoS ONE |
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7 |
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4 |
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e34074 |
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Climate models for the coming century predict rainfall reduction in the Amazonian region, including change in water availability for tropical rainforests. Here, we test the extent to which climate variables related to water regime, temperature and irradiance shape the growth trajectories of neotropical trees. We developed a diameter growth model explicitly designed to work with asynchronous climate and growth data. Growth trajectories of 205 individual trees from 54 neotropical species censused every 2 months over a 4-year period were used to rank 9 climate variables and find the best predictive model. About 9% of the individual variation in tree growth was imputable to the seasonal variation of climate. Relative extractable water was the main predictor and alone explained more than 60% of the climate effect on tree growth, i.e. 5.4% of the individual variation in tree growth. Furthermore, the global annual tree growth was more dependent on the diameter increment at the onset of the rain season than on the duration of dry season. The best predictive model included 3 climate variables: relative extractable water, minimum temperature and irradiance. The root mean squared error of prediction (0.035 mm.d -1) was slightly above the mean value of the growth (0.026 mm.d -1). Amongst climate variables, we highlight the predominant role of water availability in determining seasonal variation in tree growth of neotropical forest trees and the need to include these relationships in forest simulators to test, in silico, the impact of different climate scenarios on the future dynamics of the rainforest. © 2012 Wagner et al. |
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INRA, UMR 'Ecologie et Ecophysiologie Forestière', Champenoux, France |
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19326203 (Issn) |
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Export Date: 24 April 2012; Source: Scopus; Art. No.: e34074; doi: 10.1371/journal.pone.0034074; Language of Original Document: English; Correspondence Address: Wagner, F.; Université des Antilles et de la Guyane, UMR 'Ecologie des Forêts de Guyane', BP 709, Kourou, France; email: fabien.wagner@ecofog.gf |
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EcoFoG @ webmaster @ |
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394 |
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Lipshutz, B.H.; Taft, B.R.; Abela, A.R.; Ghorai, S.; Krasovskiy, A.; Duplais, C. |
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Catalysis in the service of green chemistry: Nobel prize-winning palladium-catalysed cross-couplings, run in water at room temperature |
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Journal Article |
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2012 |
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Platinum Metals Review |
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Platinum Met. Rev. |
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56 |
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2 |
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62-74 |
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Palladium-catalysed cross-couplings, in particular Heck, Suzuki-Miyaura and Negishi reactions developed over three decades ago, are routinely carried out in organic solvents. However, alternative media are currently of considerable interest given an increasing emphasis on making organic processes 'greener'; for example, by minimising organic waste in the form of organic solvents. Water is the obvious leading candidate in this regard. Hence, this review focuses on the application of micellar catalysis, in which a 'designer' surfactant enables these award-winning coupling reactions to be run in water at room temperature. © 2012 Johnson Matthey. |
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UMR-CNRS Ecofog, Institut Pasteur de la Guyane, 23 Avenue Pasteur, 97306 Cayenne, France |
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00321400 (Issn) |
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Cited By (since 1996): 1; Export Date: 15 May 2012; Source: Scopus; Coden: Ptmra; doi: 10.1595/147106712X629761; Language of Original Document: English; Correspondence Address: Lipshutz, B.H.; Department of Chemistry, University of California, Santa Barbara, CA 93106, United States; email: lipshutz@chem.ucsb.edu |
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EcoFoG @ webmaster @ |
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400 |
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Nirma, C.; Eparvier, V.; Stien, D. |
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Antifungal agents from Pseudallescheria boydii SNB-CN73 isolated from a nasutitermes sp. termite |
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Journal Article |
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2013 |
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Journal of Natural Products |
Abbreviated Journal |
J. Nat. Prod. |
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76 |
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5 |
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988-991 |
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Defense mutualisms between social insects and microorganisms have been described in the literature. The present article describes the discovery of a Pseudallescheria boydii strain isolated from Nasutitermes sp. The microbial symbiont produces two antifungal metabolites: tyroscherin and N-methyltyroscherin, a compound not previously described in the literature. Methylation of tyroscherin has confirmed the structure of N-methyltyroscherin. Both compounds are effective antifungal agents with favorable selectivity indices for Candida albicans and Trichophyton rubrum. © 2013 The American Chemical Society and American Society of Pharmacognosy. |
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UMR Ecofog, Institut Pasteur de la Guyane, Université des Antilles et de la Guyane, 23 Avenue Pasteur, 97306 Cayenne, France |
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01633864 (Issn) |
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Export Date: 6 June 2013; Source: Scopus; Coden: Jnprd; :doi 10.1021/np4001703; Language of Original Document: English; Correspondence Address: Eparvier, V.; CNRS, Institut de Chimie des Substances Naturelles, UPR 2301, 1 Avenue de la Terrasse, 91198 Gif-sur-Yvette, France; email: veronique.eparvier@icsn.cnrs-gif.fr |
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EcoFoG @ webmaster @ |
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491 |
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Mouillot, D.; Bellwood, D.R.; Baraloto, C.; Chave, J.; Galzin, R.; Harmelin-Vivien, M.; Kulbicki, M.; Lavergne, S.; Lavorel, S.; Mouquet, N.; Paine, C.E.T.; Renaud, J.; Thuiller, W. |
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Title |
Rare Species Support Vulnerable Functions in High-Diversity Ecosystems |
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Journal Article |
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2013 |
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PLoS Biology |
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PloS Biol. |
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11 |
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5 |
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e1001569 |
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Around the world, the human-induced collapses of populations and species have triggered a sixth mass extinction crisis, with rare species often being the first to disappear. Although the role of species diversity in the maintenance of ecosystem processes has been widely investigated, the role of rare species remains controversial. A critical issue is whether common species insure against the loss of functions supported by rare species. This issue is even more critical in species-rich ecosystems where high functional redundancy among species is likely and where it is thus often assumed that ecosystem functioning is buffered against species loss. Here, using extensive datasets of species occurrences and functional traits from three highly diverse ecosystems (846 coral reef fishes, 2,979 alpine plants, and 662 tropical trees), we demonstrate that the most distinct combinations of traits are supported predominantly by rare species both in terms of local abundance and regional occupancy. Moreover, species that have low functional redundancy and are likely to support the most vulnerable functions, with no other species carrying similar combinations of traits, are rarer than expected by chance in all three ecosystems. For instance, 63% and 98% of fish species that are likely to support highly vulnerable functions in coral reef ecosystems are locally and regionally rare, respectively. For alpine plants, 32% and 89% of such species are locally and regionally rare, respectively. Remarkably, 47% of fish species and 55% of tropical tree species that are likely to support highly vulnerable functions have only one individual per sample on average. Our results emphasize the importance of rare species conservation, even in highly diverse ecosystems, which are thought to exhibit high functional redundancy. Rare species offer more than aesthetic, cultural, or taxonomic diversity value; they disproportionately increase the potential breadth of functions provided by ecosystems across spatial scales. As such, they are likely to insure against future uncertainty arising from climate change and the ever-increasing anthropogenic pressures on ecosystems. Our results call for a more detailed understanding of the role of rarity and functional vulnerability in ecosystem functioning. © 2013 Mouillot et al. |
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Biological and Environmental Sciences, University of Stirling, Stirling, United Kingdom |
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15449173 (Issn) |
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Export Date: 12 June 2013; Source: Scopus; Art. No.: e1001569; Coden: Pblib; :doi 10.1371/journal.pbio.1001569; Language of Original Document: English; Correspondence Address: Mouillot, D.; Unité Mixte de Recherche (UMR) Centre National de la Recherche Scientifique (CNRS)-UM2, Institut français de recherche pour l'exploitation de la mer (IFREMER), Institute for Research and Development (IRD) 5119 ECOSYM, Université Montpellier 2 cc 093, Montpellier, France; email: david.mouillot@univ-montp2.fr |
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EcoFoG @ webmaster @ |
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492 |
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Siebicke, L.; Hunner, M.; Foken, T. |
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Aspects of CO 2 advection measurements |
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Journal Article |
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2012 |
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Theoretical and Applied Climatology |
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Theor. Appl. Climatol. |
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109 |
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1-2 |
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109-131 |
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Observations of vegetation-atmosphere exchange of carbon dioxide (CO 2) by the eddy covariance (EC) technique are limited by difficult conditions such as nighttime and heterogeneous terrain. Thus, advective flux components are included into the net ecosystem exchange (NEE) budget. However, advection measurements are experimentally challenging and do not always help to solve the night flux problem of the EC technique. This study investigates alternative methods for the observation of horizontal advection, in particular horizontal concentration gradients, as well as different approaches to coordinate rotation and vertical advection. Continuous high-frequency measurements of the horizontal CO 2 concentration field are employed and compared to the often used discontinuous sequential sampling. Significant differences were found in the case of 30-min mean concentration values between the conventional discontinuous sampling approach and the complete observation of the time series by continuous sampling. Estimates of vertical advection rely on accurate estimates of vertical wind velocity (W). Therefore, different approaches to the planar fit coordinate rotation have been investigated. Sector-wise rotation was able to eliminate directional dependencies of mean W. Furthermore, the effect of the data set length used for rotation (window length) was investigated and was found to have significant impact on estimates of vertical advection, with larger window lengths yielding about 50% larger vertical advection. A sequential planar fit with controlled window length is proposed to give reproducible results. The different approaches to the measurement and calculation of horizontal and vertical advection presented are applied to data obtained during the exchange processes in mountainous region experiment at the FLUXNET site Waldstein-Weidenbrunnen (DE-Bay). Estimates of NEE including advection are compared to NEE from turbulent and storage flux alone without advection. NEE including vertical advection with sector-wise planar fit rotation and controlled window length and including horizontal advection from continuous gradient measurements, which were comprehensively bias corrected by a new approach, did compare well with the expected night flux error, with meteorological drivers of the fluxes and with soil chamber measurements. Unrealistically large and noisy values of horizontal advection from the conventional discontinuous sampling approach, which lead to unrealistic values of NEE, could be eliminated by the alternative approaches presented. We therefore suggest the further testing of those approaches at other sites in order to improve the accuracy of advection measurements and, subsequently, estimates of NEE. © 2011 Springer-Verlag. |
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Wind Cert Services, TÜV SÜD Industrie Service GmbH, Ludwig-Eckert-Str. 10, 93049 Regensburg, Germany |
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0177798x (Issn) |
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Export Date: 27 June 2012; Source: Scopus; doi: 10.1007/s00704-011-0552-3; Language of Original Document: English; Correspondence Address: Siebicke, L.; Department of Micrometeorology, University of Bayreuth, Universitätsstr. 30, 95440 Bayreuth, Germany; email: lukas.siebicke@uni-bayreuth.de |
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406 |
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Barthe, S.; Gugerli, F.; Barkley, N.A.; Maggia, L.; Cardi, C.; Scotti, I. |
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Always look on both sides: Phylogenetic information conveyed by simple sequence repeat allele sequences |
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Journal Article |
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2012 |
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PLoS ONE |
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PLoS ONE |
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7 |
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7 |
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e40699 |
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Simple sequence repeat (SSR) markers are widely used tools for inferences about genetic diversity, phylogeography and spatial genetic structure. Their applications assume that variation among alleles is essentially caused by an expansion or contraction of the number of repeats and that, accessorily, mutations in the target sequences follow the stepwise mutation model (SMM). Generally speaking, PCR amplicon sizes are used as direct indicators of the number of SSR repeats composing an allele with the data analysis either ignoring the extent of allele size differences or assuming that there is a direct correlation between differences in amplicon size and evolutionary distance. However, without precisely knowing the kind and distribution of polymorphism within an allele (SSR and the associated flanking region (FR) sequences), it is hard to say what kind of evolutionary message is conveyed by such a synthetic descriptor of polymorphism as DNA amplicon size. In this study, we sequenced several SSR alleles in multiple populations of three divergent tree genera and disentangled the types of polymorphisms contained in each portion of the DNA amplicon containing an SSR. The patterns of diversity provided by amplicon size variation, SSR variation itself, insertions/deletions (indels), and single nucleotide polymorphisms (SNPs) observed in the FRs were compared. Amplicon size variation largely reflected SSR repeat number. The amount of variation was as large in FRs as in the SSR itself. The former contributed significantly to the phylogenetic information and sometimes was the main source of differentiation among individuals and populations contained by FR and SSR regions of SSR markers. The presence of mutations occurring at different rates within a marker's sequence offers the opportunity to analyse evolutionary events occurring on various timescales, but at the same time calls for caution in the interpretation of SSR marker data when the distribution of within-locus polymorphism is not known. |
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Unité Mixte de Recherche Ecologie des forêts de Guyane, Institut National de la Recherche Agronomique, Kourou, French Guiana |
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19326203 (Issn) |
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Export Date: 30 July 2012; Source: Scopus; Art. No.: e40699; doi: 10.1371/journal.pone.0040699; Language of Original Document: English; Correspondence Address: Scotti, I.; Unité Mixte de Recherche Ecologie des forêts de Guyane, Institut National de la Recherche Agronomique, Kourou, French Guiana; email: ivan.scotti@ecofog.gf |
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EcoFoG @ webmaster @ |
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416 |
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Thevenin, J.-M.; Rossi, V.; Ducamp, M.; Doare, F.; Condina, V.; Lachenaud, P. |
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Numerous clones resistant to Phytophthora palmivora in the “Guiana” genetic group of Theobroma cacao L |
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2012 |
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PLoS ONE |
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PLoS ONE |
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7 |
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7 |
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e40915 |
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Cocoa black pod rot, a disease caused by Stramenopiles of the genus Phytophthora, and particularly by the pan-tropical species P. palmivora, causes serious production losses worldwide. In order to reduce the impact of these pests and diseases, preference is given to genetic control using resistant varieties and, to that end, breeders seek sources of resistance in wild cocoa trees. For instance, surveys of spontaneous cocoa trees in French Guiana between 1985 and 1995 led to the collection of abundant plant material forming a particular genetic group (the “Guiana” group). Following numerous one-off studies demonstrating the merits of this group as a source of resistance to Phytophthora, this article presents the results of a comprehensive study assessing the resistance of 186 “Guiana” clones in relation to the Guianan strain (GY 27) of P. palmivora. This study, undertaken in French Guiana, using an efficient methodology (ten series of tests and a statistical test adapted to the ordinal nature of the data) confirmed that the “Guiana” genetic group does indeed constitute an important source of resistance to P. palmivora, though with some variations depending on the demes of origin. Numerous clones (59) proved to be as resistant as the SCAVINA 6 resistance control, whilst nine were statistically more resistant. The “Resistant” and “Moderately Resistant” Guianan clones totalled 108 (58% of the total tested). Some of the clones more resistant than SCAVINA 6 could be incorporated into numerous cocoa breeding programmes, particularly those that also display other notable qualities. The same applies for numerous other clones equivalent to SCAVINA 6, especially the “elite”' clones GU 134-B, GU 139-A and GU 285-A. © 2012 Thevenin et al. |
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CIRAD, UMR BGPI, Montpellier, France |
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19326203 (Issn) |
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Export Date: 16 August 2012; Source: Scopus; Art. No.: e40915; doi: 10.1371/journal.pone.0040915; Language of Original Document: English; Correspondence Address: Thevenin, J.-M.; CIRAD, UPR Bioagresseurs: Analyse et Maîtrise du Risque, Kourou, Guyane, France; email: jean-marc.thevenin@cirad.fr |
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Zalamea, P.-C.; Heuret, P.; Sarmiento, C.; Rodríguez, M.; Berthouly, A.; Guitet, S.; Nicolini, E.; Delnatte, C.; Barthélémy, D.; Stevenson, P.R. |
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The genus Cecropia: A biological clock to estimate the age of recently disturbed areas in the neotropics |
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Journal Article |
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2012 |
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PLoS ONE |
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PLoS ONE |
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7 |
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8 |
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e42643 |
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Forest successional processes following disturbance take decades to play out, even in tropical forests. Nonetheless, records of vegetation change in this ecosystem are scarce, increasing the importance of the chronosequence approach to study forest recovery. However, this approach requires accurate dating of secondary forests, which until now was a difficult and/or expensive task. Cecropia is a widespread and abundant pioneer tree genus of the Neotropics. Here we propose and validate a rapid and straightforward method to estimate the age of secondary forest patches based on morphological observations of Cecropia trees. We found that Cecropia-inferred ages were highly correlated with known ages of the forest. We also demonstrate that Cecropia can be used to accurately date disturbances and propose twenty-one species distributed all over the geographical range of the genus as potential secondary forest chronometer species. Our method is limited in applicability by the maximal longevity of Cecropia individuals. Although the oldest chronosequence used in this study was 20 years old, we argue that at least for the first four decades after disturbance, the method described in this study provides very accurate estimations of secondary forest ages. The age of pioneer trees provides not only information needed to calculate the recovery of carbon stocks that would help to improve forest management, but also provides information needed to characterize the initial floristic composition and the rates of species remigration into secondary forest. Our contribution shows how successional studies can be reliably and inexpensively extended without the need to obtain forest ages based on expensive or potentially inaccurate data across the Neotropics. © 2012 Zalamea et al. |
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Smithsonian Tropical Research Institute, Ancón, Panama |
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19326203 (Issn) |
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Export Date: 29 August 2012; Source: Scopus; Art. No.: e42643; doi: 10.1371/journal.pone.0042643; Language of Original Document: English; Correspondence Address: Zalamea, P.-C.; Smithsonian Tropical Research Institute, Ancón, Panama; email: camilozalamea@gmail.com |
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EcoFoG @ webmaster @ |
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424 |
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Author |
Foken, T.; Meixner, F.X.; Falge, E.; Zetzsch, C.; Serafimovich, A.; Bargsten, A.; Behrendt, T.; Biermann, T.; Breuninger, C.; Dix, S.; Gerken, T.; Hunner, M.; Lehmann-Pape, L.; Hens, K.; Jocher, G.; Kesselmeier, J.; Luers, J.; Mayer, J.C.; Moravek, A.; Plake, D.; Riederer, M.; Rutz, F.; Scheibe, M.; Siebicke, L.; Sorgel, M.; Staudt, K.; Trebs, I.; Tsokankunku, A.; Welling, M.; Wolff, V.; Zhu, Z. |
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Title |
Coupling processes and exchange of energy and reactive and non-reactive trace gases at a forest site – results of the EGER experiment |
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Journal Article |
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2012 |
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Atmospheric Chemistry And Physics |
Abbreviated Journal |
Atmos. Chem. Phys. |
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12 |
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4 |
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1923-1950 |
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To investigate the energy, matter and reactive and non-reactive trace gas exchange between the atmosphere and a spruce forest in the German mountain region, two intensive measuring periods were conducted at the FLUXNET site DE-Bay (Waldstein-Weidenbrunnen) in September/October 2007 and June/July 2008. They were part of the project “ExchanGE processes in mountainous Regions” (EGER). Beyond a brief description of the experiment, the main focus of the paper concerns the coupling between the trunk space, the canopy and the above-canopy atmosphere. Therefore, relevant coherent structures were analyzed for different in- and above canopy layers, coupling between layers was classified according to already published procedures, and gradients and fluxes of meteorological quantities as well as concentrations of non-reactive and reactive trace compounds have been sorted along the coupling classes. Only in the case of a fully coupled system, it could be shown, that fluxes measured above the canopy are related to gradients between the canopy and the above-canopy atmosphere. Temporal changes of concentration differences between top of canopy and the forest floor, particularly those of reactive trace gases (NO, NO2, O-3, and HONO) could only be interpreted on the basis of the coupling stage. Consequently, only concurrent and vertically resolved measurements of micrometeorological (turbulence) quantities and fluxes (gradients) of trace compounds will lead to a better understanding of the forest-atmosphere interaction. |
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[Foken, T.; Serafimovich, A.; Biermann, T.; Dix, S.; Gerken, T.; Hunner, M.; Jocher, G.; Lueers, J.; Riederer, M.; Ruetz, F.; Siebicke, L.; Staudt, K.] Univ Bayreuth, Dept Micrometeorol, D-95440 Bayreuth, Germany, Email: thomas.foken@uni-bayreuth.de |
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Copernicus Gesellschaft Mbh |
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English |
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1680-7316 |
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WOS:000300875900016 |
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EcoFoG @ webmaster @ |
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464 |
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