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Sardans, J.; Urbina, I.; Grau, O.; Asensio, D.; Ogaya, R.; Peñuelas, J. |
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Title |
Long-term drought decreases ecosystem C and nutrient storage in a Mediterranean holm oak forest |
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Journal Article |
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Year |
2020 |
Publication |
Environmental and Experimental Botany |
Abbreviated Journal |
Environ. Exp. Bot. |
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Volume |
177 |
Issue |
104135 |
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Aridity; Carbon stocks; Climate change; Nitrogen; Phosphorus; Potassium; Stoichiometry; carbon sequestration; deciduous forest; drought; experimental study; forest soil; long-term change; Mediterranean environment; net ecosystem exchange; nutrient cycling; shrub; stoichiometry; Mediterranean Sea; Phillyrea latifolia |
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Aridity has increased in recent decades in the Mediterranean Basin and is projected to continue to increase in the coming decades. We studied the consequences of drought on the concentrations, stoichiometries and stocks of carbon (C), nitrogen (N), phosphorus (P) and potassium (K) in leaves, foliar litter of a three dominant woody species and soil of a Mediterranean montane holm oak forest where soil-water content was experimentally reduced (15 % lower than the control plots) for 15 years. Nitrogen stocks were lower in the drought plots than in the control plots (8.81 ± 1.01 kg ha−1 in the forest canopy and 856 ± 120 kg ha−1 in the 0−15 cm soil layer), thus representing 7 and 18 % lower N stocks in the canopy and soil respectively. δ15N was consistently higher under drought conditions in all samples, indicating a general loss of N. Foliar C and K stocks were also lower but to a lesser extent than N. Decreases in biomass and C and N stocks due to drought were smallest for the most dominant tall shrub, Phillyrea latifolia, so our results suggest a lower capacity of this forest to store C and nutrients but also substantial resulting changes in forest structure with increasing drought. © 2020 Elsevier B.V. |
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Cirad, UMR EcoFoG (AgroParisTech, CNRS, Inra, Univ Antilles, Univ Guyane), Campus Agronomique, Kourou, 97310, French Guiana |
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Elsevier B.V. |
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00988472 (Issn) |
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EcoFoG @ webmaster @ |
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954 |
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Céréghino, R.; Françoise, L.; Bonhomme, C.; Carrias, J.-F.; Compin, A.; Corbara, B.; Jassey, V.; Leflaive, J.; Rota, T.; Farjalla, V.; Leroy, C. |
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Title |
Desiccation resistance traits predict freshwater invertebrate survival and community response to drought scenarios in a Neotropical ecosystem |
Type |
Journal Article |
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Year |
2020 |
Publication |
Ecological Indicators |
Abbreviated Journal |
Ecol. Indic. |
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Volume |
119 |
Issue |
106839 |
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Keywords |
Climate change; Functional traits; Lt50; Macroinvertebrates; Rainforests; Biodiversity; Climate change; Driers (materials); Drought; Environmental management; Population statistics; Tanks (containers); Water; Aquatic invertebrates; Climate change adaptation; Controlled conditions; Environmental managers; Freshwater biodiversity; Freshwater invertebrates; Future climate scenarios; Laboratory conditions; Aquatic organisms; aquatic community; biodiversity; climate change; cuticle; desiccation; drought stress; invertebrate; Neotropical Region; population size; survival; French Guiana; Invertebrata |
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The intensification of dry seasons is a major threat to freshwater biodiversity in Neotropical regions. Little is known about resistance to drying stress and the underpinning traits in Neotropical freshwater species, so we don't know whether desiccation resistance allows to anticipate shifts in biological diversity under future climate scenarios. Here, we used the aquatic invertebrates that live in the rainwater-filled leaves of tank bromeliads, to examine the extent to which desiccation resistance of species measured in the laboratory predicts community response to drought intensification in nature. We measured desiccation resistance in 17 invertebrate species (>90% of the biomass usually found in bromeliads of French Guiana) by recording the median lethal time (LT50) of experimental populations exposed to controlled conditions of residual moisture. In the field, we placed rainshelters above tank bromeliads to emulate drought scenarios ranging from the ambient norm to IPCC scenarios and extreme events, and we recorded the response of functional community structure. LT50 ranged from 4.18 to 19.06 days, and was related to cuticle content and dry body mass. Among other functional indicators that represent strategies to optimize resource use under stressful conditions (e.g., habitat use, trophic specialization), LT50 was the best predictor of community structure responses along a gradient of emulated drought intensities. Therefore, species’ LT50s measured under laboratory conditions can be used to forecast aquatic community response to drying stress in nature. Anticipating how species will cope with drought has never been more important for environmental managers to support climate change adaptation. We show that desiccation resistance in freshwater invertebrates is a key indicator of potential population size and local–global range shifts, and this could be especially true in the Neotropics where species have narrow physiological tolerances for climatic variation. © 2020 Elsevier Ltd |
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ECOFOG, AgroParisTech, CIRAD, CNRS, INRA, Université de Guyane, Université des Antilles, Campus Agronomique, Kourou, 97379, France |
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Elsevier B.V. |
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1470160x (Issn) |
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EcoFoG @ webmaster @ |
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941 |
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Donald, J.; Maxfield, P.; Leroy, C.; Ellwood, M.D.F. |
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Title |
Epiphytic suspended soils from Borneo and Amazonia differ in their microbial community composition |
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Journal Article |
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Year |
2020 |
Publication |
Acta Oecologica |
Abbreviated Journal |
Acta Oecol. |
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Volume |
106 |
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Pages |
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Keywords |
Asplenium; Bacteria; Borneo; Bromeliaceae; Canopy; French Guiana; Fungi; Plfa; Rainforest; bacterium; community composition; epiphyte; fungus; microbial community; niche; relative abundance; soil microorganism; species diversity; tropical forest; Amazonia; Borneo; Danum Valley; East Malaysia; French Guiana; Malaysia; Nouragues; Sabah; Asplenium; Asplenium nidus; Aves; Bacteria (microorganisms); Bromeliaceae; Fungi |
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Microbial organisms support the high species diversity associated with tropical forests, and likely drive functional processes, but microorganisms found in rainforest canopies are not well understood. We quantified the microbial diversity of suspended soils from two classical epiphytic model systems (bromeliads & bird's nest ferns) across two localities: the Nouragues Reserve in French Guiana and Danum Valley in Malaysian Borneo. Non-epiphytic suspended soils were also collected as controls at the Nouragues Reserve. Effects of epiphyte type and sample location on microbial community composition were determined using Phospholipid Fatty Acid (PLFA) analysis. Total microbial biomass remained constant across the suspended soil types, but PLFA peaks denoting the relative abundance of different microbes varied between bromeliads, bird's nest ferns and non-epiphytic control soils. Suspended soils associated with bird's nest ferns from Borneo contained a microbial community significantly different in composition from those of congeneric bird's nest ferns from Amazonia, due to shifts in the relative abundance of fungi and bacteria. Our findings reveal that epiphytes create convergent niches for microorganisms in tropical canopies, while highlighting the sensitive nature of suspended soil microbial communities. © 2020 Elsevier Masson SAS |
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20 Baily Place, Cheswick, Bristol, BS16 1BG, United Kingdom |
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Elsevier B.V. |
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1146609x (Issn) |
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EcoFoG @ webmaster @ |
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959 |
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Sayer, E.J.; Rodtassana, C.; Sheldrake, M.; Bréchet, L.M.; Ashford, O.S.; Lopez-Sangil, L.; Kerdraon-Byrne, D.; Castro, B.; Turner, B.L.; Wright, S.J.; Tanner, E.V.J. |
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Title |
Revisiting nutrient cycling by litterfall—Insights from 15 years of litter manipulation in old-growth lowland tropical forest |
Type |
Journal Article |
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Year |
2020 |
Publication |
Advances in Ecological Researc |
Abbreviated Journal |
Adv. Ecol. Res. |
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Volume |
62 |
Issue |
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Pages |
173-223 |
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Keywords |
Forest floor; Litter addition; Litter removal; Litterfall; Nutrient cycling; Nutrient use efficiency; Soil fertility; Trace elements; Tropical lowland forest |
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The crucial role of tropical forests in the global carbon balance is underpinned by their extraordinarily high biomass and productivity, even though the majority of tropical forests grow on nutrient-poor soils. Nutrient cycling by litterfall has long been considered essential for maintaining high primary productivity in lowland tropical forests but few studies have tested this assumption experimentally. We review and synthesise findings from the Gigante Litter Manipulation Project (GLiMP), a long-term experiment in lowland tropical forest in Panama, Central America, in which litter has been removed from or added to large-scale plots for 15 years. We assessed changes in soil and litter nutrient concentrations in response to the experimental treatments and estimated nutrient return and nutrient use efficiency to indicate changes in nutrient cycling. The soil concentrations of most nutrients increased with litter addition and declined with litter removal. Litter removal altered nitrogen, potassium, manganese and zinc cycling, demonstrating the importance of litter inputs for maintaining the availability of these elements to plants. By contrast, litter addition only altered nitrogen cycling and, despite low concentrations of available soil phosphorus, the effects of litter manipulation on phosphorus cycling were inconsistent. We discuss potential mechanisms underlying the observed changes, and we emphasise the importance of decomposition processes in the forest floor for retaining nutrient elements, which partially decouples nutrient cycling from the mineral soil. Finally, by synthesising GLiMP studies conducted during 15 years of litter manipulation, we highlight key knowledge gaps and avenues for future research into tropical forest nutrient cycling. © 2020 Elsevier Ltd |
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Teagasc, Johnstown Castle, Wexford, Ireland |
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Academic Press Inc. |
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Dumbrell A.J.; Turner E.C.; Fayle T.M. |
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Advances in Ecological Research |
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62 |
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00652504 (Issn); 9780128211342 (Isbn) |
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EcoFoG @ webmaster @ |
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1001 |
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Zinger, L.; Donald, J.; Brosse, S.; Gonzalez, M.A.; Iribar, A.; Leroy, C.; Murienne, J.; Orivel, J.; Schimann, H.; Taberlet, P.; Lopes, C.M. |
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Advances and prospects of environmental DNA in neotropical rainforests |
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Journal Article |
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Year |
2020 |
Publication |
Advances in Ecological Research |
Abbreviated Journal |
Adv. Ecol. Res. |
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Volume |
62 |
Issue |
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Pages |
331-373 |
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Biomonitoring; Conservation biology; DNA metabarcoding; eDNA; Environmental genomics; Neotropics; Rainforests |
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The rainforests of the Neotropics shelter a vast diversity of plant, animal and microscopic species that provide critical ecosystem goods and services for both local and worldwide populations. These environments face a major crisis due to increased deforestation, pollution, and climate change, emphasizing the need for more effective conservation efforts. The adequate monitoring of these ecosystems has proven a complex and time consuming endeavour, which depends on ever dwindling taxonomic expertise. To date, many species remain undiscovered, let alone described, with otherwise limited information regarding known species population distributions and densities. Overcoming these knowledge shortfalls and practical limitations is becoming increasingly possible through techniques based on environmental DNA (eDNA), i.e., DNA that can be obtained from environmental samples (e.g. tissues, soil, sediment, water, etc.). When coupled with high-throughput sequencing, these techniques now enable realistic, cost-effective, and standardisable biodiversity assessments. This opens up enormous opportunities for advancing our understanding of complex and species-rich tropical communities, but also in facilitating large-scale biomonitoring programs in the neotropics. In this review, we provide a brief introduction to eDNA methods, and an overview of their current and potential uses in both terrestrial and aquatic ecosystems of neotropical rainforests. We also discuss the limits and challenges of these methods for our understanding and monitoring of biodiversity, as well as future research and applied perspectives of these techniques in neotropical rainforests, and beyond. © 2020 Elsevier Ltd |
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Departamento de Zoologia, Instituto de Biociências, Universidade Estadual Paulista (UNESP), Rio Claro, SP, Brazil |
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Academic Press Inc. |
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Dumbrell A.J.; Turner E.C.; Fayle T.M. |
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Advances in Ecological Research |
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62 |
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00652504 (Issn); 9780128211342 (Isbn) |
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EcoFoG @ webmaster @ |
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995 |
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Urbina, I.; Grau, O.; Sardans, J.; Ninot, J.M.; Peñuelas, J. |
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Title |
Encroachment of shrubs into subalpine grasslands in the Pyrenees changes the plant-soil stoichiometry spectrum |
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Journal Article |
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Year |
2020 |
Publication |
Plant and Soil |
Abbreviated Journal |
Plant Soil |
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Volume |
448 |
Issue |
1-2 |
Pages |
37-53 |
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Keywords |
Nutrient stocks; Plant strategy; Plant-soil stoichiometry; Shrub encroachment; Subalpine grassland succession; aboveground biomass; biogeochemical cycle; carbon sequestration; ectomycorrhiza; fungus; grass; nitrogen; nutrient uptake; shrub; soil-vegetation interaction; stoichiometry; subalpine environment; succession; Europe; Pyrenees; Fungi |
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Aims: Shrub encroachment has been reported over a large proportion of the subalpine grasslands across Europe and is expected to have an important impact on the biogeochemical cycle of these ecosystems. We investigated the stoichiometric changes in the plant-soil system along the succession (e.g. increase in encroachment from unencroached grassland to mature shrubland) at two contrasting sites in the Pyrenees. Methods: We analyzed the chemical composition (C, N,15N, P, K, Ca, Mg and Fe) in the soil and in the aboveground plant compartments (leaves, leaf-litter and stems) of the main herbaceous species and shrubs at three contrasting stages of the succession: unencroached grassland, young shrubland and mature shrubland. Results: The plant-soil stoichiometry spectrum differed between the successional stages. Shrub encroachment generally increased the concentration of C and Ca and the C:N ratio and often reduced to concentrations of N, P and K in the leaves and leaf-litter, while several soil nutrient concentrations (N, P, K Ca and Mg) decreased. The stocks of C, N, P, Ca, and Mg in the total aboveground biomass increased with encroachment. Conclusions: Shrub encroachment favored the dominance of long-lived species with low concentrations of N and P in the plant-soil compartments, high C:nutrient ratios in the aboveground biomass and increase the uptake of N through ericoid or ectomycorrhizal fungi. We highlight the role of shrubs in the sequestration of C and nutrients through the allocation to the aboveground biomass. The changes in plant-soil elemental composition and stocks suggest a slowdown of the biogeochemical cycles in the subalpine mountain areas where shrub encroachment occurred. © 2020, Springer Nature Switzerland AG. |
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Biodiversity Research Institute (IRBio) and Department of Evolutionary Biology, Ecology and Environmental Sciences, University of Barcelona, Barcelona, Catalonia, Spain |
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Springer |
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0032079x (Issn) |
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EcoFoG @ webmaster @ |
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983 |
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Van Langenhove, L.; Depaepe, T.; Vicca, S.; van den Berge, J.; Stahl, C.; Courtois, E.; Weedon, J.; Urbina, I.; Grau, O.; Asensio, D.; Peñuelas, J.; Boeckx, P.; Richter, A.; Van Der Straeten, D.; Janssens, I.A. |
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Title |
Regulation of nitrogen fixation from free-living organisms in soil and leaf litter of two tropical forests of the Guiana shield |
Type |
Journal Article |
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Year |
2020 |
Publication |
Plant and Soil |
Abbreviated Journal |
Plant Soil |
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Volume |
450 |
Issue |
1-2 |
Pages |
93-110 |
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Keywords |
Free-living nitrogen fixation; French Guiana; Molybdenum; Nutrients; Phosphorus; Tropical forest; acetylene; leaf litter; molybdenum; nitrogen fixation; nutrient cycling; phosphorus; rainforest; reduction; soil biota; soil carbon; soil nitrogen; soil water; topographic effect; tropical forest; French Guiana |
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Background and aims: Biological fixation of atmospheric nitrogen (N2) is the main pathway for introducing N into unmanaged ecosystems. While recent estimates suggest that free-living N fixation (FLNF) accounts for the majority of N fixed in mature tropical forests, the controls governing this process are not completely understood. The aim of this study was to quantify FLNF rates and determine its drivers in two tropical pristine forests of French Guiana. Methods: We used the acetylene reduction assay to measure FLNF rates at two sites, in two seasons and along three topographical positions, and used regression analyses to identify which edaphic explanatory variables, including carbon (C), nitrogen (N), phosphorus (P) and molybdenum (Mo) content, pH, water and available N and P, explained most of the variation in FLNF rates. Results: Overall, FLNF rates were lower than measured in tropical systems elsewhere. In soils seasonal variability was small and FLNF rates differed among topographies at only one site. Water, P and pH explained 24% of the variation. In leaf litter, FLNF rates differed seasonally, without site or topographical differences. Water, C, N and P explained 46% of the observed variation. We found no regulatory role of Mo at our sites. Conclusions: Rates of FLNF were low in primary rainforest on poor soils on the Guiana shield. Water was the most important rate-regulating factor and FLNF increased with increasing P, but decreased with increasing N. Our results support the general assumption that N fixation in tropical lowland forests is limited by P availability. © 2019, The Author(s). |
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Department of Microbiology and Ecosystem Science, University of Vienna, Althanstr. 14, Vienna, 1090, Austria |
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Springer |
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0032079x (Issn) |
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EcoFoG @ webmaster @ |
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971 |
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Permanent link to this record |
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Author |
Céréghino, R.; Corbara, B.; Leroy, C.; Carrias, J.-F. |
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Title |
Ecological determinants of community structure across the trophic levels of freshwater food webs: a test using bromeliad phytotelmata |
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Journal Article |
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Year |
2020 |
Publication |
Hydrobiologia |
Abbreviated Journal |
Hydrobiologia |
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Volume |
847 |
Issue |
2 |
Pages |
391-402 |
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Keywords |
Environmental filtering; Functional group; Neotropical; Niche; Trophic interactions; alga; assembly rule; bacterium; community structure; ecological modeling; environmental conditions; food web; freshwater ecosystem; functional group; Neotropic Ecozone; niche; protozoan; taxonomy; trophic interaction; trophic level; algae; Invertebrata; Protozoa |
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Understanding the relative importance of habitat and biotic drivers on community assembly across food web components is an important step towards predicting the consequences of environmental changes. Because documenting entire food webs is often impractical, this question has been only partially investigated. Here, we partitioned variation in species assemblages of the major components of tank bromeliad food webs (bacteria, algae, protozoans, detritivorous and predatory invertebrates) into habitat and biotic determinants and examined the influence of habitat variables and predator or prey abundance on all taxonomic assemblages. Ecological determinism of assemblage structure ranged from weak in bacteria (< 10% of the explained variance) to strong in predatory invertebrates (90%). Habitat features and canopy openness significantly influenced species assemblages; however, prey or predator density had far and away the most significant structuring effects. If biotic forces are at least as important as the abiotic forces while the importance of stochasticity declines towards upper trophic levels, then trophic levels could respond differently to natural or anthropogenic disturbance and to shifts in species distributions. The effects of such differential responses on food web reconfiguration, however, remain to be elucidated. © 2019, Springer Nature Switzerland AG. |
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UMR EcoFoG (AgroParisTech, CIRAD, CNRS, INRA, Université de Guyane, Université des Antilles), Kourou, 97310, France |
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Springer |
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00188158 (Issn) |
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EcoFoG @ webmaster @ |
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996 |
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Garcia-Davila, C.; Aldana Gomero, D.; Renno, J.-F.; Diaz Soria, R.; Hidalgo Pizango, G.; Flores Llampazo, G.; Castro-Ruiz, D.; Mejia de Loayza, E.; Angulo Chavez, C.; Mader, M.; Tysklind, N.; Paredes-Villanueva, K.; del Castillo Torres, D.; Degen, B.; Honorio Coronado, E.N. |
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Title |
Molecular evidence for three genetic species of Dipteryx in the Peruvian Amazon |
Type |
Journal Article |
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Year |
2020 |
Publication |
Genetica |
Abbreviated Journal |
Genetica |
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Volume |
148 |
Issue |
1 |
Pages |
1-11 |
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Keywords |
D. micrantha; Dipteryx charapilla; Genetic diversity; Microsatellites; Sequencing; Shihuahuaco; microsatellite DNA; plant DNA; allele; Dipteryx; DNA sequence; genetic variation; genetics; genotype; haplotype; Peru; phylogeny; plastid; river; species difference; Alleles; Dipteryx; DNA, Plant; Genetic Variation; Genotype; Haplotypes; Microsatellite Repeats; Peru; Phylogeny; Plastids; Rivers; Sequence Analysis, DNA; Species Specificity |
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There is a high international demand for timber from the genus Dipteryx, or “shihuahuaco” as it is known in Peru. Developing tools that allow the identification and discrimination of Dipteryx species is therefore important for supporting management of natural populations and to underpin legal trade of its timber. The objective of this study was the molecular characterization of Dipteryx species in the Peruvian Amazonia. Two plastid regions (cpDNA: trnH–psbA and matK) were sequenced and 11 microsatellite markers (nDNA) were genotyped for 32 individuals identified as Dipteryx charapilla, D. micrantha morphotype 1 and D. micrantha morphotype 2. Using the concatenated sequences of the plastid genes, we identified ten haplotypes that were not shared between the species or between the D. micrantha morphotypes. Haplotypic diversity was greater in D. micrantha morphotype 2 and D. charapilla than in D. micrantha morphotype 1, which presented only one haplotype with a wide distribution in Peru. The microsatellites allowed the discrimination of the same three clades and identified diagnostic alleles for each clade. These results allowed us to demonstrate that the two morphotypes of D. micrantha are different at both the plastid and nuclear markers, which supports the existence of three genetically distinct species in Peru. This study provides information for the genetic discrimination of Dipteryx species and emphasises the importance of conserving the genetic variability of this genus in the Peruvian Amazonia. © 2019, Springer Nature Switzerland AG. |
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Carrera de Ingeniería Foresta, Laboratorio de Dendrocronología, Facultad de Ciencias Agrícolas, Universidad Autónoma Gabriel René Moreno, Km 9 carretera al Norte, El Vallecito, Santa Cruz, Bolivia |
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00166707 (Issn) |
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EcoFoG @ webmaster @ |
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990 |
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Dejean, A.; Petitclerc, F.; Azémar, F. |
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Seasonality influences ant-mediated nutrient acquisition (myrmecotrophy) by a Neotropical myrmecophyte |
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2020 |
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Evolutionary Ecology |
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Evol. Ecol. |
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34 |
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4 |
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645-657 |
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Ant-plant relationships; Mutualism; Myrmecophyte; Myrmecotrophy; Phenology; Stable isotopes; ant; herb; host plant; life cycle; myrmecochory; myrmecophyte; Neotropical Region; phenology; seasonality; stable isotope; understory; Gentianaceae; Tachia; Tachia guianensis |
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Tachia guianensis (Gentianaceae), a Neotropical understory myrmecophyte, shelters ant colonies in its hollow trunks and branches (domatia). In turn, it is protected from defoliators and obtains nutrients from ant-produced wastes (myrmecotrophy). Aiming to verify if seasonality influences nitrogen assimilation via ant wastes using the stable isotope nitrogen-15, we first studied Tachia’s phenology and its seasonal leaf production, and then the life cycle of its two more frequent guest ant species. We found that leaf production was much higher during the rainy than the dry season. Mature guest ant colonies produced sexuals regardless of the season and the net weight of the waste piles inside the domatia did not vary between seasons, so that the availability of nutrients to their host plant is steady year-long. By providing the two most frequent mutualistic guest ant species with food enriched with nitrogen-15, we showed that Tachia individuals assimilate more nitrogen from ant wastes during the rainy season, when the plant is physiologically active, compared to the dry season. Thus, one can deduce that the increase in nitrogen assimilation during the rainy season is determined by the increase in Tachia’s physiological activity during that season. Information gathered through a bibliographic compilation confirms that none of the 15 ant species known to be associated with myrmecophytes for which the life cycle was studied is characterized by seasonal reproduction (which would result in fluctuating waste production). The same is true for 49.7% of 167 tropical ant species (seasonal production for the remaining species). We concluded that, in contrast to the non-seasonal ant colony reproductive cycle, Tachia’s phenology determines the myrmecotrophic assimilation rate. © 2020, Springer Nature Switzerland AG. |
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CNRS, UMR EcoFoG, AgroParisTech, CIRAD, INRAE, Université des Antilles, Université de Guyane, Kourou, 97310, France |
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02697653 (Issn) |
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EcoFoG @ webmaster @ |
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956 |
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